View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10865A_low_315 (Length: 241)
Name: NF10865A_low_315
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865A_low_315 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 35449817 - 35450052
Alignment:
| Q |
1 |
attagagagagagatgaagcacaagaaaaatgtgaaagacttctcttggaaaagctagttttccatcaacaacaaaatgctccactttccggagtttcaa |
100 |
Q |
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| T |
35449817 |
attagagaaagagatgaagcacaagaaaaatgtcaaagacttctcttggaaaagctagttttccatcaacaacaaaatgatccactttccggagtttcaa |
35449916 |
T |
|
| Q |
101 |
gcattgaagatgaacaagttacaagaaaaggaattgactcaaacaatggtttttctttgtcttcatcagattgtgaagaaagcattgtttcttcaccaat |
200 |
Q |
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| T |
35449917 |
gcattgaagatgaacaagttacaagaaaaggaattgactcaaacaatggtttttctttgtcttcttcagattgtgaagaaagcattgtttcttcaccaat |
35450016 |
T |
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| Q |
201 |
tattgatcaatcaatgattgaagtactaacaccaaa |
236 |
Q |
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| T |
35450017 |
tattgatcaatcaatgattgaagtactaacaccaaa |
35450052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 21010701 - 21010633
Alignment:
| Q |
4 |
agagagagagatgaagcacaagaaaaatgtgaaagacttctcttggaaaagctagttttccatcaacaa |
72 |
Q |
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||||| ||||||||||||||||||||||| |||||||| |||| |||||| || ||||||| |||||| |
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| T |
21010701 |
agagaaagagatgaagcacaagaaaaatgccaaagacttttcttagaaaagttacttttccaacaacaa |
21010633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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