View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10865A_low_318 (Length: 241)

Name: NF10865A_low_318
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10865A_low_318
NF10865A_low_318
[»] chr1 (16 HSPs)
chr1 (7-240)||(13244695-13244928)
chr1 (110-237)||(13271474-13271601)
chr1 (26-237)||(13085911-13086122)
chr1 (109-237)||(12964052-12964180)
chr1 (101-237)||(30368285-30368421)
chr1 (33-237)||(13100812-13101015)
chr1 (26-240)||(13081039-13081253)
chr1 (101-237)||(13070353-13070489)
chr1 (101-237)||(13094278-13094414)
chr1 (31-237)||(13007009-13007215)
chr1 (31-237)||(13204268-13204474)
chr1 (109-234)||(19279348-19279473)
chr1 (101-237)||(13129707-13129843)
chr1 (101-237)||(13161400-13161536)
chr1 (27-240)||(13065387-13065600)
chr1 (110-169)||(13010661-13010720)
[»] chr6 (1 HSPs)
chr6 (141-232)||(31380253-31380344)


Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 7 - 240
Target Start/End: Complemental strand, 13244928 - 13244695
Alignment:
Q  7 catcacacttgcaactttgttatatcaaatgcatcttttactgatttcgacctttaagccgtgtttcatgcgaagggcaatagaatttctcagcgttaca 106  Q
    |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||| ||||||||||||||    
T  13244928 catcacacttacaactttgttatatcaaatgcatcttttactgacttcgacctttaagccgtgtttcatgcgaacgacaatagaagttctcagcgttaca 13244829  T
Q  107 gggtgaccttccaccacctgtatgcgaaacttccataacaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaacttctag 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  13244828 gggtgaccttccaccacctgtatgcgaaacttccataacaaagaagctgcaaccattttcatttgaacgaagctaagatctttcccaatacaacttctag 13244729  T
Q  207 gacctgcattgaaagctatgaacttgtaagacgg 240  Q
    ||||||||||||||||||||||||||||||||||    
T  13244728 gacctgcattgaaagctatgaacttgtaagacgg 13244695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 110 - 237
Target Start/End: Original strand, 13271474 - 13271601
Alignment:
Q  110 tgaccttccaccacctgtatgcgaaacttccataacaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaacttctaggac 209  Q
    |||||||||||||| |||||| ||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||    
T  13271474 tgaccttccaccacatgtatgtgaaacttccataatacagaagctgcaaccattttcatttgaataaagctaatatctttcccaagacagcttctaggac 13271573  T
Q  210 ctgcattgaaagctatgaacttgtaaga 237  Q
    |||||||||| |||||||||||||||||    
T  13271574 ctgcattgaatgctatgaacttgtaaga 13271601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 26 - 237
Target Start/End: Original strand, 13085911 - 13086122
Alignment:
Q  26 ttatatcaaatgcatcttttactgatttcgacctttaagccgtgtttcatgcgaagggcaatagaatttctcagcgttacagggtgaccttccaccacct 125  Q
    ||||||||||| ||||||||||| | || ||| || || || |||| |||||| ||  ||||||||  |||  | |||||||  ||||||||||| || |    
T  13085911 ttatatcaaattcatcttttactaactttgactttgaatccatgttccatgcggagaacaatagaaactcttggagttacagaatgaccttccacaactt 13086010  T
Q  126 gtatgcgaaacttccataacaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaacttctaggacctgcattgaaagctat 225  Q
    ||||| ||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||| || |||||    
T  13086011 gtatgtgaaacttccataacatagcagctgcaaccattttcatttgaacaatgctaatatctttcccaagacaacttcgaggacctgcattaaatgctat 13086110  T
Q  226 gaacttgtaaga 237  Q
    ||||||| ||||    
T  13086111 gaacttgcaaga 13086122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 109 - 237
Target Start/End: Complemental strand, 12964180 - 12964052
Alignment:
Q  109 gtgaccttccaccacctgtatgcgaaacttccataacaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaacttctagga 208  Q
    ||||||||||||||| | |||| |||||||||| |||| |  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12964180 gtgaccttccaccacttctatgtgaaacttccacaacacattagcagcaaccattttcatttgaacaaagctaatatctttcccaatacaacttctagga 12964081  T
Q  209 cctgcattgaaagctatgaacttgtaaga 237  Q
    ||||||||||| ||||||||||| |||||    
T  12964080 cctgcattgaatgctatgaacttataaga 12964052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 101 - 237
Target Start/End: Complemental strand, 30368421 - 30368285
Alignment:
Q  101 gttacagggtgaccttccaccacctgtatgcgaaacttccataacaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaac 200  Q
    |||||||||||||||||||| ||||||||| |||||||||||||||| | |||||||||||| ||||||||||| || |||| |||||| || |||||||    
T  30368421 gttacagggtgaccttccacgacctgtatgtgaaacttccataacaaggcagctgcaaccatcttcatttgaacgaaactaagatctttacccatacaac 30368322  T
Q  201 ttctaggacctgcattgaaagctatgaacttgtaaga 237  Q
    ||||||| |||| ||||||||||||||||||||||||    
T  30368321 ttctaggtcctgtattgaaagctatgaacttgtaaga 30368285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 33 - 237
Target Start/End: Original strand, 13100812 - 13101015
Alignment:
Q  33 aaatgcatcttttactgatttcgacctttaagccgtgtttcatgcgaagggcaatagaatttctcagcgttacagggtgaccttccaccacctgtatgcg 132  Q
    |||||||||||||| ||| || |||||| ||||| ||||||||| ||||  ||| ||||    || | |||| ||||||||||||||||||||||||| |    
T  13100812 aaatgcatcttttagtgactttgaccttcaagccatgtttcatgtgaagaacaaaagaaagcttcggggttatagggtgaccttccaccacctgtatgtg 13100911  T
Q  133 aaacttccataacaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaacttctaggacctgcattgaaagctatgaacttg 232  Q
    |||||||  |||||||| |||||| ||||| ||||||||||  ||||||||||| || || |||||||||||||| |||| |||||||||||||||||||    
T  13100912 aaacttcggtaacaaagcagctgcgaccatcttcatttgaatgaagctaatatccttacccatacaacttctaggtcctg-attgaaagctatgaacttg 13101010  T
Q  233 taaga 237  Q
    |||||    
T  13101011 taaga 13101015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 26 - 240
Target Start/End: Complemental strand, 13081253 - 13081039
Alignment:
Q  26 ttatatcaaatgcatcttttactgatttcgacctttaagccgtgtttcatgcgaagggcaatagaatttctcagcgttacagggtgaccttccaccacct 125  Q
    ||||||||||||||||||||||  |||| |||||| ||||| |||| ||||||||||  |||||||   ||  |  |||  | |||||||||||||||||    
T  13081253 ttatatcaaatgcatcttttacgaattttgaccttaaagccatgttccatgcgaaggagaatagaaaccctaggaattattgagtgaccttccaccacct 13081154  T
Q  126 gtatgcgaaacttccataacaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaacttctaggacctgcattgaaagctat 225  Q
    | ||| |||||||  |||| |  | ||||||||||||||||||||||| ||| |||||||||||||||| ||| ||||| ||||||||||| || |||||    
T  13081153 gaatgtgaaacttaaataaaactgcagctgcaaccattttcatttgaagaaaactaatatctttcccaagacagcttcttggacctgcattaaacgctat 13081054  T
Q  226 gaacttgtaagacgg 240  Q
    |||||| ||||||||    
T  13081053 gaacttataagacgg 13081039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 101 - 237
Target Start/End: Complemental strand, 13070489 - 13070353
Alignment:
Q  101 gttacagggtgaccttccaccacctgtatgcgaaacttccataacaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaac 200  Q
    |||||||||||||||||||||||||||||| ||||||||  |||||||| |||||| ||||| ||||||||||  || |||| |||||| || | |||||    
T  13070489 gttacagggtgaccttccaccacctgtatgtgaaacttctgtaacaaagcagctgcgaccatcttcatttgaatgaaactaagatctttacccaaacaac 13070390  T
Q  201 ttctaggacctgcattgaaagctatgaacttgtaaga 237  Q
    |||| ||||||| ||||||||||||||||||||||||    
T  13070389 ttctcggacctgtattgaaagctatgaacttgtaaga 13070353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 101 - 237
Target Start/End: Original strand, 13094278 - 13094414
Alignment:
Q  101 gttacagggtgaccttccaccacctgtatgcgaaacttccataacaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaac 200  Q
    |||||||||||||||||||||||||||||| ||||||||| |||||||| |||||| ||||| ||||||||||  || ||||||||||| || ||||||     
T  13094278 gttacagggtgaccttccaccacctgtatgtgaaacttccgtaacaaagcagctgcgaccatcttcatttgaatgaaactaatatctttacctatacaaa 13094377  T
Q  201 ttctaggacctgcattgaaagctatgaacttgtaaga 237  Q
    |||| || ||||  |||||||||||||||||||||||    
T  13094378 ttctgggtcctgtgttgaaagctatgaacttgtaaga 13094414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 31 - 237
Target Start/End: Original strand, 13007009 - 13007215
Alignment:
Q  31 tcaaatgcatcttttactgatttcgacctttaagccgtgtttcatgcgaagggcaatagaatttctcagcgttacagggtgaccttccaccacctgtatg 130  Q
    |||||||||||||||| ||| ||  ||||| ||||| ||||||||| ||||  ||| ||||    || | |||| |||||||||| ||||||||| ||||    
T  13007009 tcaaatgcatcttttagtgactttaaccttcaagccatgtttcatgtgaagaacaaaagaaagcttcggggttatagggtgacctgccaccacctttatg 13007108  T
Q  131 cgaaacttccataacaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaacttctaggacctgcattgaaagctatgaact 230  Q
     |||||||   ||||||||  ||||| ||||| ||||||||||  ||||||||||| || || ||||||||||||||||||| |||||||||||||||||    
T  13007109 tgaaactttggtaacaaagctgctgcgaccatcttcatttgaatgaagctaatatccttgcccatacaacttctaggacctgtattgaaagctatgaact 13007208  T
Q  231 tgtaaga 237  Q
    |||||||    
T  13007209 tgtaaga 13007215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 31 - 237
Target Start/End: Original strand, 13204268 - 13204474
Alignment:
Q  31 tcaaatgcatcttttactgatttcgacctttaagccgtgtttcatgcgaagggcaatagaatttctcagcgttacagggtgaccttccaccacctgtatg 130  Q
    |||||||||||||||| ||| ||  |||||||| || | ||||||| ||||  ||| |||| |  |  | |||||||||||||||||||| | || ||||    
T  13204268 tcaaatgcatcttttagtgactttaacctttaaaccatatttcatgtgaagaacaaaagaaatctttggggttacagggtgaccttccactatctttatg 13204367  T
Q  131 cgaaacttccataacaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaacttctaggacctgcattgaaagctatgaact 230  Q
     |||| |||  |||||||| |||||| ||||| ||||||||||  || |||| |||||| || | ||||||||||||||||| |||||||||||||||||    
T  13204368 tgaaaattctgtaacaaagcagctgcgaccatcttcatttgaatgaaactaagatctttacccaaacaacttctaggacctgtattgaaagctatgaact 13204467  T
Q  231 tgtaaga 237  Q
    |||||||    
T  13204468 tgtaaga 13204474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 109 - 234
Target Start/End: Complemental strand, 19279473 - 19279348
Alignment:
Q  109 gtgaccttccaccacctgtatgcgaaacttccataacaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaacttctagga 208  Q
    |||||||||||| ||||||||||||||||||||||| | || |||||||||||||||||||||||  ||  |||||||||| || | ||| ||||| |||    
T  19279473 gtgaccttccacgacctgtatgcgaaacttccataatacagcagctgcaaccattttcatttgaaggaaagtaatatcttttccgagacagcttctcgga 19279374  T
Q  209 cctgcattgaaagctatgaacttgta 234  Q
    |||||||| || ||||||||||||||    
T  19279373 cctgcattaaacgctatgaacttgta 19279348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 101 - 237
Target Start/End: Original strand, 13129707 - 13129843
Alignment:
Q  101 gttacagggtgaccttccaccacctgtatgcgaaacttccataacaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaac 200  Q
    |||||||||||||||||||||||||||||| ||||||||  |||||||| |||||| ||||| ||||||||||  || |||| |||||| || ||||||     
T  13129707 gttacagggtgaccttccaccacctgtatgtgaaacttctgtaacaaagcagctgcgaccatcttcatttgaatgaaactaagatctttacctatacaaa 13129806  T
Q  201 ttctaggacctgcattgaaagctatgaacttgtaaga 237  Q
    |||| || ||||  |||||||||| ||||||||||||    
T  13129807 ttctgggtcctgtgttgaaagctacgaacttgtaaga 13129843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 101 - 237
Target Start/End: Original strand, 13161400 - 13161536
Alignment:
Q  101 gttacagggtgaccttccaccacctgtatgcgaaacttccataacaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaac 200  Q
    |||||| ||||||||||||||||||||||| ||||||||| |||||||| |||||| ||||| ||||||||||  || |||| |||||| || ||||||     
T  13161400 gttacaaggtgaccttccaccacctgtatgtgaaacttccgtaacaaagcagctgcgaccatcttcatttgaatgaaactaagatctttacctatacaaa 13161499  T
Q  201 ttctaggacctgcattgaaagctatgaacttgtaaga 237  Q
    |||| || ||||  ||||||| |||||||||||||||    
T  13161500 ttctgggtcctgtgttgaaagatatgaacttgtaaga 13161536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 27 - 240
Target Start/End: Complemental strand, 13065600 - 13065387
Alignment:
Q  27 tatatcaaatgcatcttttactgatttcgacctttaagccgtgtttcatgcgaagggcaatagaatttctcagcgttacagggtgaccttccaccacctg 126  Q
    |||||||||||||||||||| ||| |  |||||| ||||| |||||||| |  |||| |||||||   ||  | |||||||| ||||| ||||| |  ||    
T  13065600 tatatcaaatgcatcttttagtgactatgaccttcaagccatgtttcattccgagggtaatagaaagccttggagttacaggatgaccatccactaaatg 13065501  T
Q  127 tatgcgaaacttccataacaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaacttctaggacctgcattgaaagctatg 226  Q
    ||||| |||||||||||  | ||  || ||| |||| ||||||| ||| ||| | |||||||| || | ||||||||| || ||||||||||||||||||    
T  13065500 tatgcaaaacttccatagtatagccgcggcagccatcttcatttcaacgaaggtgatatctttacccaaacaacttcttggccctgcattgaaagctatg 13065401  T
Q  227 aacttgtaagacgg 240  Q
    ||||||||||||||    
T  13065400 aacttgtaagacgg 13065387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 169
Target Start/End: Original strand, 13010661 - 13010720
Alignment:
Q  110 tgaccttccaccacctgtatgcgaaacttccataacaaagaagctgcaaccattttcatt 169  Q
    |||||||||||||| ||||||||||| ||||||||||||  |||||| ||||| ||||||    
T  13010661 tgaccttccaccacttgtatgcgaaatttccataacaaatcagctgcgaccatcttcatt 13010720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 232
Target Start/End: Complemental strand, 31380344 - 31380253
Alignment:
Q  141 ataacaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaacttctaggacctgcattgaaagctatgaacttg 232  Q
    ||||||||||||| |||  ||| || |||||||  || |||| |||||| |||||||||||||  || |||| |||||||| ||||||||||    
T  31380344 ataacaaagaagccgcagacatcttaatttgaatgaaactaagatctttaccaatacaacttccgggtcctgtattgaaagatatgaacttg 31380253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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