View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10865A_low_320 (Length: 241)
Name: NF10865A_low_320
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865A_low_320 |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 19 - 225
Target Start/End: Original strand, 56176298 - 56176504
Alignment:
| Q |
19 |
ctttcttctatacatttttcttcaatactgcaacttgtataaaaacatactctgttcactatttctctttaccgttgtatttcataatacttgtgtgttc |
118 |
Q |
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| T |
56176298 |
ctttcttctatacatttttcttcaacactgcaacttgtataaaaacatactctgttcactatttctctttaccgttgtatttcataatacttgtgtgttc |
56176397 |
T |
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| Q |
119 |
gttttggttgatccattgattttatgttagaagaaccgtattgtcaattcacaattgcattgcttttagtagatttatatcttgaatactttgttacaag |
218 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56176398 |
gttttggttgatccattgattttatgttataagaaccgtattgtcaattcacaattgcattgcttttagtagatttatatcttgaatactttgttacaag |
56176497 |
T |
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| Q |
219 |
aattatc |
225 |
Q |
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|| |||| |
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| T |
56176498 |
aaatatc |
56176504 |
T |
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