View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10865A_low_321 (Length: 241)

Name: NF10865A_low_321
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10865A_low_321
NF10865A_low_321
[»] chr7 (8 HSPs)
chr7 (8-204)||(26617737-26617933)
chr7 (12-153)||(39865471-39865612)
chr7 (12-204)||(33190302-33190494)
chr7 (77-204)||(14719370-14719501)
chr7 (53-204)||(7578536-7578687)
chr7 (21-102)||(14719287-14719367)
chr7 (7-101)||(37479524-37479617)
chr7 (86-204)||(35339023-35339141)
[»] chr4 (16 HSPs)
chr4 (20-204)||(52311220-52311404)
chr4 (12-180)||(54687659-54687826)
chr4 (29-174)||(20275938-20276082)
chr4 (12-174)||(26997226-26997388)
chr4 (44-204)||(5350929-5351089)
chr4 (12-180)||(54678539-54678709)
chr4 (16-201)||(17365674-17365858)
chr4 (12-174)||(26992029-26992194)
chr4 (12-104)||(6408036-6408127)
chr4 (12-103)||(22746635-22746726)
chr4 (42-204)||(27360193-27360354)
chr4 (12-204)||(12746523-12746715)
chr4 (12-66)||(14000179-14000231)
chr4 (79-201)||(18902113-18902234)
chr4 (15-66)||(13994875-13994924)
chr4 (78-134)||(20355099-20355155)
[»] chr1 (6 HSPs)
chr1 (8-181)||(40274356-40274530)
chr1 (11-174)||(40279148-40279311)
chr1 (12-183)||(29530120-29530292)
chr1 (19-183)||(29547775-29547940)
chr1 (40-203)||(28201654-28201817)
chr1 (53-135)||(27417427-27417509)
[»] chr5 (8 HSPs)
chr5 (12-204)||(16633255-16633446)
chr5 (12-174)||(19779954-19780116)
chr5 (20-174)||(19479453-19479607)
chr5 (11-174)||(19783201-19783363)
chr5 (77-204)||(17604690-17604821)
chr5 (40-102)||(17604824-17604886)
chr5 (161-204)||(21575046-21575089)
chr5 (112-204)||(35105030-35105122)
[»] chr3 (8 HSPs)
chr3 (13-126)||(8832533-8832646)
chr3 (7-138)||(39875817-39875946)
chr3 (12-125)||(44126710-44126823)
chr3 (82-204)||(21587185-21587306)
chr3 (12-64)||(13921708-13921758)
chr3 (88-204)||(20458819-20458933)
chr3 (131-204)||(20463226-20463299)
chr3 (12-96)||(7873835-7873918)
[»] chr2 (3 HSPs)
chr2 (40-204)||(19912279-19912443)
chr2 (127-204)||(34111054-34111131)
chr2 (78-200)||(45276354-45276475)
[»] chr8 (6 HSPs)
chr8 (11-103)||(17909890-17909983)
chr8 (12-71)||(10739137-10739196)
chr8 (12-71)||(15007178-15007236)
chr8 (12-67)||(36911928-36911983)
chr8 (23-104)||(10734068-10734149)
chr8 (27-151)||(12145639-12145764)
[»] chr6 (1 HSPs)
chr6 (12-64)||(23599934-23599986)
[»] scaffold0248 (1 HSPs)
scaffold0248 (12-66)||(16258-16312)


Alignment Details
Target: chr7 (Bit Score: 177; Significance: 2e-95; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 8 - 204
Target Start/End: Original strand, 26617737 - 26617933
Alignment:
Q  8 atcaaagaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagat 107  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||  ||||||    
T  26617737 atcaaagaagaggaagaagaagatgaaaacactttgtattattctcttcacaagtgtgtctttacaattcaatatgagccctatttataggattcaagat 26617836  T
Q  108 gaataagtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaaagtgaaagactaaggatggaaatccactaa 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26617837 gaataagtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaaagtgaaagactaaggatggaaatccactaa 26617933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 12 - 153
Target Start/End: Complemental strand, 39865612 - 39865471
Alignment:
Q  12 aagaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaat 111  Q
    |||||||||||| |||||||||||||||||||||||||||||||||  |||||||||||  ||| | ||||||| ||||||||||| ||||||||||| |    
T  39865612 aagaagaggaaggagaagatgaaagcactttgtattattctcttcaagagtgtgtctttgcaatacgatatgagccctatttatagtacacaagatgagt 39865513  T
Q  112 aagtgagtgatcaagataattaaggtccactaactattcact 153  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  39865512 aagtgagtgatcaagacaattaaggtccactaactattcact 39865471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 12 - 204
Target Start/End: Original strand, 33190302 - 33190494
Alignment:
Q  12 aagaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaat 111  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||| |||| |||||  ||||||||||| |    
T  33190302 aagaagaggaaggagaagatgaaagcactttgtattattctcttcacaagtgtgtctttgcaatacaatatgagaccta-ttataatacacaagatgagt 33190400  T
Q  112 aagtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaaagtgaaagac-taaggatggaaatccactaa 204  Q
    |||||||||||||||  || ||||||||| |||||||||||| |  |||||   ||||||||| ||||||||| |||||||| | |||||||||    
T  33190401 aagtgagtgatcaaggcaactaaggtccagtaactattcacttaccaatggaaattataggaaggtgaaagacttaaggatgtacatccactaa 33190494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 77 - 204
Target Start/End: Original strand, 14719370 - 14719501
Alignment:
Q  77 caatatgagtcctatttataggacacaagatgaataagtgagtgatcaagataattaaggtccactaac----tattcactcattaatgggggttatagg 172  Q
    |||||||||||||||||||| || |||| |||||||  ||||||||||| |||||||||||||||||||    |||||||||| ||||||||||||||||    
T  14719370 caatatgagtcctatttataagatacaaaatgaatagctgagtgatcaaaataattaaggtccactaactatatattcactcactaatgggggttatagg 14719469  T
Q  173 aaagtgaaagactaaggatggaaatccactaa 204  Q
    || ||| ||||||||||| ||| |||||||||    
T  14719470 aaggtggaagactaaggacggacatccactaa 14719501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 53 - 204
Target Start/End: Complemental strand, 7578687 - 7578536
Alignment:
Q  53 cttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaataagtgagtgatcaagataattaaggtccactaactattcac 152  Q
    |||| |||||||||||||| | |  |||||||||||||||||||||| |||| || |  |||||| |||||||  ||||||||| ||||| || || ||     
T  7578687 cttctcaagtgtgtctttatactataatatgagtcctatttataggatacaatataagcaagtgaatgatcaaagtaattaaggaccactgaccatccat 7578588  T
Q  153 tcattaatgggggttataggaaagtgaaagactaaggatggaaatccactaa 204  Q
    ||| | |||||  |||| |||| ||| ||||||||||||||| |||||||||    
T  7578587 tcacttatgggacttatgggaaggtggaagactaaggatggacatccactaa 7578536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 21 - 102
Target Start/End: Original strand, 14719287 - 14719367
Alignment:
Q  21 aagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacac 102  Q
    |||||||||||||||||  ||||||||||||||||||||||||||  |||| | | ||||||||| ||||||||||||||||    
T  14719287 aagaagaagatgaaagct-tttgtattattctcttcacaagtgtgcatttacactacaatatgagccctatttataggacac 14719367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 101
Target Start/End: Original strand, 37479524 - 37479617
Alignment:
Q  7 aatcaaagaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggaca 101  Q
    |||||||||| | |||||||| || ||||||  ||||||||||||||||||||| ||| |||||| | | ||||||  |||||||||||||||||    
T  37479524 aatcaaagaaaaagaagaagatgaagaaagct-tttgtattattctcttcacaaatgtttctttacattgcaatataggtcctatttataggaca 37479617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 204
Target Start/End: Original strand, 35339023 - 35339141
Alignment:
Q  86 tcctatttataggacacaagatgaataagtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaaagtgaaagact 185  Q
    |||||||||||||| |||| ||||  | ||||   |||||  ||||||||| ||| |||| || || ||| | ||||| |||||||||| ||| ||||||    
T  35339023 tcctatttataggatacaatatgagcatgtgaaatatcaaagtaattaaggaccattaaccatccattcacttatgggagttataggaaggtggaagact 35339122  T
Q  186 aaggatggaaatccactaa 204  Q
    || |||||| |||||||||    
T  35339123 aatgatggacatccactaa 35339141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 105; Significance: 1e-52; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 20 - 204
Target Start/End: Original strand, 52311220 - 52311404
Alignment:
Q  20 gaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaataagtgagt 119  Q
    |||||||| ||||||| || ||||||||||||||||||||| |||||||||| | | |||||||| |||||||||||||||||||||||| |||||||||    
T  52311220 gaagaagatgatgaaaacattttgtattattctcttcacaaatgtgtctttacactgcaatatgaatcctatttataggacacaagatgactaagtgagt 52311319  T
Q  120 gatcaagataattaaggtccactaactattcactcattaatgggggttataggaaagtgaaagactaaggatggaaatccactaa 204  Q
    ||||||   |||||||||||||||||||||||||||  ||| ||||||||||||| ||| ||||||| ||||||| || ||||||    
T  52311320 gatcaaagaaattaaggtccactaactattcactcaccaataggggttataggaaggtggaagactagggatggacattcactaa 52311404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 12 - 180
Target Start/End: Original strand, 54687659 - 54687826
Alignment:
Q  12 aagaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaat 111  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||| ||| ||||||||  ||||||||||| | ||||||||| |    
T  54687659 aagaagaggaaggagaagatgaaatcactttgtattattctcttcacaagtgtatctttataatacaatatgaaccctatttatagtatacaagatgagt 54687758  T
Q  112 aagtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaaagtgaa 180  Q
    |||| ||||||||||| |||| |||||| |||| |||||||| | |||| |||||||||||||||||||    
T  54687759 aagtaagtgatcaagaaaattgaggtcccctaattattcacttactaat-ggggttataggaaagtgaa 54687826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 29 - 174
Target Start/End: Complemental strand, 20276082 - 20275938
Alignment:
Q  29 gatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaataagtgagtgatcaagat 128  Q
    ||||||||| |||||||||||||| |||||| ||||||||||| ||| ||||||||||||||||||||| ||| ||||||| ||||||||||||||||      
T  20276082 gatgaaagc-ctttgtattattctgttcacatgtgtgtctttacaatacaatatgagtcctatttatagtacataagatgagtaagtgagtgatcaaggc 20275984  T
Q  129 aattaaggtccactaactattcactcattaatgggggttataggaa 174  Q
    | ||||||||||||||||||||||| | ||||||  ||||||||||    
T  20275983 agttaaggtccactaactattcacttactaatggaagttataggaa 20275938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 12 - 174
Target Start/End: Complemental strand, 26997388 - 26997226
Alignment:
Q  12 aagaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaat 111  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||  |||  |||||||||||||||||||| ||||||||||| |    
T  26997388 aagaagagaaaggagaagatgaaagcactttgtattattctcttcacaagtatgtctttgcaatataatatgagtcctatttatagtacacaagatgagt 26997289  T
Q  112 aagtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaa 174  Q
    |||| |||| ||||    |||||||| |||| |||||||||| | ||||| | ||||||||||    
T  26997288 aagttagtgttcaaagctattaaggttcactgactattcacttactaatgagagttataggaa 26997226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 44 - 204
Target Start/End: Complemental strand, 5351089 - 5350929
Alignment:
Q  44 tattattctcttcacaagtgtgtctttag-aattcaatatgagtcctatttataggacacaagatgaataagtgagtgatcaagataattaaggtccact 142  Q
    ||||||||| |||||||||||||||||   |||  ||||||||||||||||||||||||||| |||| |||||| | |||||| ||||||||||||| ||    
T  5351089 tattattctattcacaagtgtgtctttttcaataaaatatgagtcctatttataggacacaaaatgagtaagtg-gcgatcaaaataattaaggtccgct 5350991  T
Q  143 aactattcactcattaatgggggttataggaaagtgaaagactaaggatggaaatccactaa 204  Q
    ||||||||||||  |||||| | ||||||||| ||| ||||||||||||||| |||||||||    
T  5350990 aactattcactcgctaatggagattataggaaggtggaagactaaggatggacatccactaa 5350929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 12 - 180
Target Start/End: Original strand, 54678539 - 54678709
Alignment:
Q  12 aagaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaat 111  Q
    |||||||||||| ||||||||||| |||||| |||||||||||||||||  || |||||| |||  |||||||||||||||||||  ||||||||||| |    
T  54678539 aagaagaggaaggagaagatgaaaacactttttattattctcttcacaaacgtatctttacaatataatatgagtcctatttataatacacaagatgagt 54678638  T
Q  112 aagt--gagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaaagtgaa 180  Q
    ||||  | ||||||||   ||||||||||||| ||||||||||| | ||| |||||||||||||| |||||    
T  54678639 aagtaagtgtgatcaatgaaattaaggtccaccaactattcacttaataacgggggttataggaaggtgaa 54678709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 16 - 201
Target Start/End: Complemental strand, 17365858 - 17365674
Alignment:
Q  16 agaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaataagt 115  Q
    |||||||||||| | ||||| || ||||||||||| | |||||||  || |||||| | |  |||| ||| | ||||||||||||||||||||| |||||    
T  17365858 agaggaagaagatggtgaaaacattttgtattattttgttcacaaaggtttctttacactataata-gagccttatttataggacacaagatgagtaagt 17365760  T
Q  116 gagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaaagtgaaagactaaggatggaaatccac 201  Q
    ||||||||||   ||||||||||||||||||||||||||| |||||  ||||||| |||| || ||||||||||||| | ||||||    
T  17365759 gagtgatcaaagaaattaaggtccactaactattcactcactaatgaaggttataagaaaatggaagactaaggatgaacatccac 17365674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 12 - 174
Target Start/End: Complemental strand, 26992194 - 26992029
Alignment:
Q  12 aagaagaggaagaagaagatgaaagcactttgtattatt---ctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatg 108  Q
    |||||||||||  |||||||||||| |||||||||||||   |||||||||||| | |||||  |||  |||||||| ||||||||||| ||||  ||||    
T  26992194 aagaagaggaaagagaagatgaaagtactttgtattattattctcttcacaagtatatctttgcaatataatatgagccctatttatagtacacgggatg 26992095  T
Q  109 aataagtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaa 174  Q
    ||||||| ||||||||||  ||||||||||||||||||||||||| | ||||| |  |||||||||    
T  26992094 aataagttagtgatcaaggcaattaaggtccactaactattcacttactaatgagatttataggaa 26992029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 12 - 104
Target Start/End: Complemental strand, 6408127 - 6408036
Alignment:
Q  12 aagaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaa 104  Q
    ||||||| ||||||||||||||||| | |||||||||||||||||||||||||| |||||   | ||||||  ||||||||||||||||||||    
T  6408127 aagaagaagaagaagaagatgaaag-attttgtattattctcttcacaagtgtgcctttactttgcaatataggtcctatttataggacacaa 6408036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 103
Target Start/End: Complemental strand, 22746726 - 22746635
Alignment:
Q  12 aagaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacaca 103  Q
    |||| ||||| |||||||||||||| |||||||||||||||||||||||| ||||| ||| | |  ||| |  |||||||||||||||||||    
T  22746726 aagacgaggaggaagaagatgaaagtactttgtattattctcttcacaagggtgtcattacattgtaatgtaggtcctatttataggacaca 22746635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 42 - 204
Target Start/End: Complemental strand, 27360354 - 27360193
Alignment:
Q  42 tgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaataagtgagtgatcaagataattaaggtccac 141  Q
    ||||||||| | |||||||| ||||||||| | |  ||||  |||||||||||||||| |||| ||||| |||||| |||||||  ||||||||| ||||    
T  27360354 tgtattatttttttcacaagcgtgtctttacactataatacaagtcctatttataggatacaatatgaacaagtgaatgatcaaagtaattaaggaccac 27360255  T
Q  142 taactattcactcattaatgggggttataggaaagtgaaagactaaggatggaaatccactaa 204  Q
    |||| ||  | ||||| || || |||||||||| ||| |||||||  |||| | |||||||||    
T  27360254 taaccatctattcatttat-ggagttataggaaggtggaagactactgatgaacatccactaa 27360193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 12 - 204
Target Start/End: Original strand, 12746523 - 12746715
Alignment:
Q  12 aagaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtc-tttagaattcaatatgagtcctatttataggacacaagatgaa 110  Q
    |||||||||| |||||||||||||| |  |||||||||||| |||| ||||||||| || | | |  |||||  || ||||||||||||| ||| ||||     
T  12746523 aagaagaggaggaagaagatgaaagtatattgtattattcttttcataagtgtgtcattcacattataatataggttctatttataggacgcaa-atgag 12746621  T
Q  111 taagtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaaagtgaaagactaaggatggaaatccactaa 204  Q
     |||||| |||||||  | ||||||| ||| ||| ||| || ||| |||| | ||||||||||| ||| |||| | |||||||| |||||||||    
T  12746622 caagtgaatgatcaaagtcattaaggaccattaagtatacattcactaatagtggttataggaaggtggaagattgaggatggacatccactaa 12746715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 66
Target Start/End: Complemental strand, 14000231 - 14000179
Alignment:
Q  12 aagaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgt 66  Q
    |||||||||||||||| |||||||||  ||||| |||||||||||||||||||||    
T  14000231 aagaagaggaagaagatgatgaaagc--tttgtgttattctcttcacaagtgtgt 14000179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 79 - 201
Target Start/End: Original strand, 18902113 - 18902234
Alignment:
Q  79 atatgagtcctatttataggacacaagatgaataagtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaaagtg 178  Q
    |||||||||  ||||||||||||||| ||||  ||||||  |||||| | |||||||| ||| |||  || || ||| |||||| ||||||||||| |||    
T  18902113 atatgagtcagatttataggacacaa-atgagcaagtgaaagatcaaaacaattaaggaccattaagcatccattcactaatggaggttataggaaggtg 18902211  T
Q  179 aaagactaaggatggaaatccac 201  Q
    ||||| |||||||| | ||||||    
T  18902212 aaagattaaggatgaacatccac 18902234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 13994924 - 13994875
Alignment:
Q  15 aagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgt 66  Q
    ||||||||||||| |||||||||  ||||| |||||||||||||||||||||    
T  13994924 aagaggaagaagatgatgaaagc--tttgtgttattctcttcacaagtgtgt 13994875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 134
Target Start/End: Original strand, 20355099 - 20355155
Alignment:
Q  78 aatatgagtcctatttataggacacaagatgaataagtgagtgatcaagataattaa 134  Q
    |||||||||||||||||||||| |||| ||||| || ||| |||||||  |||||||    
T  20355099 aatatgagtcctatttataggatacaatatgaacaactgaatgatcaaagtaattaa 20355155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 99; Significance: 5e-49; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 8 - 181
Target Start/End: Original strand, 40274356 - 40274530
Alignment:
Q  8 atcaaagaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagat 107  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||| || ||||||||||  |||||||||    
T  40274356 atcaaagaagaggaaggagaagatgaaagcactttgtattattctcttcacaagtgtgtctttgcaatacaatattagccctatttataatacacaagat 40274455  T
Q  108 gaataagtgagtgatcaagataattaaggtccactaacta-ttcactcattaatgggggttataggaaagtgaaa 181  Q
    || ||||||||||||||||  |||||| |||||||||||| |||||| | ||||||| |||||| ||| ||||||    
T  40274456 gagtaagtgagtgatcaaggcaattaaagtccactaactatttcacttactaatgggagttataagaaggtgaaa 40274530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 11 - 174
Target Start/End: Original strand, 40279148 - 40279311
Alignment:
Q  11 aaagaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaa 110  Q
    ||||||||| ||| ||||||||||| |||||| ||||||||||||||||| |||||||||  ||| ||||||||  ||||||||||| |||||||||||     
T  40279148 aaagaagagaaaggagaagatgaaaacactttatattattctcttcacaaatgtgtctttgcaatacaatatgaaccctatttatagtacacaagatgag 40279247  T
Q  111 taagtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaa 174  Q
    ||||||||||||||||  ||||||||||||||||||||||||| | ||||||| ||||||||||    
T  40279248 taagtgagtgatcaaggcaattaaggtccactaactattcacttactaatgggagttataggaa 40279311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 12 - 183
Target Start/End: Complemental strand, 29530292 - 29530120
Alignment:
Q  12 aagaagaggaagaagaagatgaaagcactttgtattattct-cttcacaagtgtg-tctttagaattcaatatgagtcctatttataggacacaagatga 109  Q
    ||||||||||||||| |||||||| ||||||||||||||||  ||  |||||||| |||||| | | ||||||  |||||||||||| ||||||| ||||    
T  29530292 aagaagaggaagaaggagatgaaaacactttgtattattctatttttcaagtgtgttctttacattacaatataggtcctatttatatgacacaa-atga 29530194  T
Q  110 ataagtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaaagtgaaaga 183  Q
      |||||| |||||||   |||||||| |||||||| || || | | | |||||| ||| ||||||||| ||||    
T  29530193 gcaagtgaatgatcaaaccaattaaggaccactaaccatgcatttactgatggggtttacaggaaagtggaaga 29530120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 183
Target Start/End: Complemental strand, 29547940 - 29547775
Alignment:
Q  19 ggaagaagaagatgaaagcactttgtattattctc-ttcacaagtgtg-tctttagaattcaatatgagtcctatttataggacacaagatgaataagtg 116  Q
    |||||||||||||||||  | |||||||||||||| ||  |||||||| |||||| | | ||||||  ||||||||||||||||| || ||||  |||||    
T  29547940 ggaagaagaagatgaaaatattttgtattattctctttttcaagtgtgttctttacattacaatataggtcctatttataggacataa-atgagcaagtg 29547842  T
Q  117 agtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaaagtgaaaga 183  Q
    | |||||||   |||||||| |||||||| || || | | |||||||| ||||||||| ||| ||||    
T  29547841 aatgatcaaacaaattaaggaccactaaccatgcatttactaatggggattataggaaggtggaaga 29547775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 203
Target Start/End: Original strand, 28201654 - 28201817
Alignment:
Q  40 tttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaataagtgagtgatcaagataattaaggtcc 139  Q
    |||||| ||||||||| |||||||||   ||| | |  |||||||||| ||||||||||||| || ||||| |||||| | |||||   |||||| | |     
T  28201654 tttgtactattctctttacaagtgtgctattacattaaaatatgagtcatatttataggacataa-atgaacaagtgaattatcaaagcaattaaagact 28201752  T
Q  140 actaactattcactcattaatgg-gggttataggaaagtgaaagactaaggatggaaatccacta 203  Q
    |||||| || || ||| |||||| |||||||||||| ||| ||||  ||||||||| ||||||||    
T  28201753 actaaccatacattcactaatggagggttataggaaggtggaagataaaggatggacatccacta 28201817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 135
Target Start/End: Original strand, 27417427 - 27417509
Alignment:
Q  53 cttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaataagtgagtgatcaagataattaag 135  Q
    |||| |||||||||||||| | |  |||| |||||||||||||| || |||| |||| ||||||| |||||||  ||||||||    
T  27417427 cttctcaagtgtgtctttacattataatacgagtcctatttataagatacaatatgagtaagtgaatgatcaaattaattaag 27417509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 97; Significance: 8e-48; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 12 - 204
Target Start/End: Original strand, 16633255 - 16633446
Alignment:
Q  12 aagaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaat 111  Q
    ||||||| ||||| || ||||||| |  ||| |||||||||||||||||| ||||||||  ||| ||||||||| ||||||||||||||||||| ||| |    
T  16633255 aagaagaagaagatgatgatgaaaaccttttatattattctcttcacaagcgtgtctttgcaatacaatatgagccctatttataggacacaagttgagt 16633354  T
Q  112 aagtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaaagtgaaagactaaggatggaaatccactaa 204  Q
    |||||| |||||||  |||||||||||||||||||||||||||  |||| ||||||||||||| ||| ||||||||||||||| |||||||||    
T  16633355 aagtgaatgatcaaagtaattaaggtccactaactattcactcgctaat-ggggttataggaaggtggaagactaaggatggacatccactaa 16633446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 12 - 174
Target Start/End: Original strand, 19779954 - 19780116
Alignment:
Q  12 aagaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaat 111  Q
    |||||||||||  ||||||| |||||||||||||||||||||||||  |||||||||||  ||| ||||||||| ||||||||||| |||||||| || |    
T  19779954 aagaagaggaatgagaagataaaagcactttgtattattctcttcaagagtgtgtctttgtaatacaatatgagccctatttatagtacacaagacgagt 19780053  T
Q  112 aagtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaa 174  Q
    ||||||||||||||| |||||||||||||||||||||||||| | ||||| | ||||||||||    
T  19780054 aagtgagtgatcaaggtaattaaggtccactaactattcacttactaatgagagttataggaa 19780116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 20 - 174
Target Start/End: Original strand, 19479453 - 19479607
Alignment:
Q  20 gaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaataagtgagt 119  Q
    ||||||||||||||||| |||||||||||||||||| | ||||||||||||| ||| |||||| || ||||||||||| ||||||||||| |||| ||||    
T  19479453 gaagaagaagatgaaagaactttgtattattctctttataagtgtgtctttacaatacaatataagccctatttatagtacacaagatgagtaagcgagt 19479552  T
Q  120 gatcaagataattaaggtccactaactattcactcattaatgggggttataggaa 174  Q
    |||||||  ||||||||||||||||||||||||| | ||||| | ||||||||||    
T  19479553 gatcaaggcaattaaggtccactaactattcacttactaatgagagttataggaa 19479607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 11 - 174
Target Start/End: Original strand, 19783201 - 19783363
Alignment:
Q  11 aaagaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaa 110  Q
    ||||||||| ||| ||||||| |||||||||||||||||||||||||  ||||||||||| | || |||||||||  |||||||||| |||||||||||     
T  19783201 aaagaagagaaaggagaagataaaagcactttgtattattctcttcaagagtgtgtcttt-gcatacaatatgagcactatttatagtacacaagatgag 19783299  T
Q  111 taagtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaa 174  Q
    |||||||||||| ||   ||||||| ||||||||||||||||| | ||||| | ||||||||||    
T  19783300 taagtgagtgatgaaagcaattaagttccactaactattcacttactaatgagagttataggaa 19783363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 77 - 204
Target Start/End: Complemental strand, 17604821 - 17604690
Alignment:
Q  77 caatatgagtcctatttataggacacaagatgaataagtgagtgatcaagataattaaggtccactaac----tattcactcattaatgggggttatagg 172  Q
    |||||||||||||||||||| || |||| |||||||  ||||||||||| |||||||||||||||||||    |||||||||| ||||||||||||||||    
T  17604821 caatatgagtcctatttataagatacaaaatgaatagctgagtgatcaaaataattaaggtccactaactatatattcactcactaatgggggttatagg 17604722  T
Q  173 aaagtgaaagactaaggatggaaatccactaa 204  Q
    || ||| ||||||||||||||| |||||||||    
T  17604721 aaggtggaagactaaggatggacatccactaa 17604690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 40 - 102
Target Start/End: Complemental strand, 17604886 - 17604824
Alignment:
Q  40 tttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacac 102  Q
    ||||||||||||||||||||||||||  |||| | | ||||||||| ||||||||||||||||    
T  17604886 tttgtattattctcttcacaagtgtgcatttacactacaatatgagccctatttataggacac 17604824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 204
Target Start/End: Original strand, 21575046 - 21575089
Alignment:
Q  161 gggggttataggaaagtgaaagactaaggatggaaatccactaa 204  Q
    |||||||||||||| ||| ||||||||||||||| |||||||||    
T  21575046 gggggttataggaaggtggaagactaaggatggacatccactaa 21575089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 204
Target Start/End: Complemental strand, 35105122 - 35105030
Alignment:
Q  112 aagtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaaagtgaaagactaaggatggaaatccactaa 204  Q
    |||||| |||||||  |||||||||  ||||||| || || ||| | ||||| ||||| | || ||| ||||||||||||||| |||||||||    
T  35105122 aagtgaatgatcaaagtaattaaggatcactaaccatccattcacttatgggagttattgcaaggtgtaagactaaggatggacatccactaa 35105030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 7e-27; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 13 - 126
Target Start/End: Original strand, 8832533 - 8832646
Alignment:
Q  13 agaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaata 112  Q
    ||||||||||| ||| ||||||| |||||||||||||||||||||  | |||||||||  ||| ||||||||  ||||||||||| ||||||||||| ||    
T  8832533 agaagaggaaggagaggatgaaatcactttgtattattctcttcaagactgtgtctttgcaatacaatatgaaccctatttatagtacacaagatgagta 8832632  T
Q  113 agtgagtgatcaag 126  Q
    ||||||||||||||    
T  8832633 agtgagtgatcaag 8832646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 7 - 138
Target Start/End: Complemental strand, 39875946 - 39875817
Alignment:
Q  7 aatcaaagaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaaga 106  Q
    |||| ||||| |||| |||||||||||||| | ||||||||  |||||||||||||||||||||  ||| ||||| |||   ||||||||| ||||||||    
T  39875946 aatctaagaaaaggaggaagaagatgaaagtaatttgtatt--tctcttcacaagtgtgtctttgcaatacaataggagctttatttatagtacacaaga 39875849  T
Q  107 tgaataagtgagtgatcaagataattaaggtc 138  Q
    ||| ||||||||||||||||  ||||||||||    
T  39875848 tgagtaagtgagtgatcaaggcaattaaggtc 39875817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 125
Target Start/End: Original strand, 44126710 - 44126823
Alignment:
Q  12 aagaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtc-tttagaattcaatatgagtcctatttataggacacaagatgaa 110  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||||||||||| || | | | ||||||  |||||||||||||||||||| ||||     
T  44126710 aagaagagaaagaagaagatgaaagtactttgtattattctcttcacaagtgtgtcattcacattacaatataggtcctatttataggacacaa-atgag 44126808  T
Q  111 taagtgagtgatcaa 125  Q
     |||||| |||||||    
T  44126809 caagtgaatgatcaa 44126823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 82 - 204
Target Start/End: Original strand, 21587185 - 21587306
Alignment:
Q  82 tgagtcctatttataggacacaagatgaataagtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaaagtgaaa 181  Q
    ||||||||||||||||||||||| ||||  |||||| |||||||   | ||||||  ||||||| || |  ||| |||||||||||||||||| ||| ||    
T  21587185 tgagtcctatttataggacacaa-atgagcaagtgaatgatcaaagcagttaaggatcactaaccatactttcactaatgggggttataggaaggtggaa 21587283  T
Q  182 gactaaggatggaaatccactaa 204  Q
    || ||||| |||| | |||||||    
T  21587284 gattaagggtggacacccactaa 21587306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 13921758 - 13921708
Alignment:
Q  12 aagaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgt 64  Q
    |||||||||||||||| |||||||||  ||||| |||||||||||||||||||    
T  13921758 aagaagaggaagaagatgatgaaagc--tttgtgttattctcttcacaagtgt 13921708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 204
Target Start/End: Original strand, 20458819 - 20458933
Alignment:
Q  88 ctatttataggacacaagatgaataagtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaaagtgaaagactaa 187  Q
    ||||||||||| ||||| ||||  |||||| ||||||| | | ||||||| ||||||| |  || ||| |||||||| ||||||||| ||| |||| |||    
T  20458819 ctatttataggtcacaa-atgagcaagtgaatgatcaaaacatttaaggttcactaaccaaacattcactaatgggg-ttataggaaggtggaagattaa 20458916  T
Q  188 ggatggaaatccactaa 204  Q
    ||||||| |||||||||    
T  20458917 ggatggacatccactaa 20458933  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 204
Target Start/End: Original strand, 20463226 - 20463299
Alignment:
Q  131 ttaaggtccactaactattcactcattaatgggggttataggaaagtgaaagactaaggatggaaatccactaa 204  Q
    ||||||||||||||| || || ||| |||| ||| ||||||||| | | ||||||||| ||||| |||||||||    
T  20463226 ttaaggtccactaaccatacattcactaatagggattataggaaggaggaagactaagaatggacatccactaa 20463299  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 96
Target Start/End: Original strand, 7873835 - 7873918
Alignment:
Q  12 aagaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttata 96  Q
    ||||||| ||||| || ||||||||| ||||||||||||||||| |||| ||||| |||| | |  || ||||||| ||||||||    
T  7873835 aagaagaagaagacgatgatgaaagc-ctttgtattattctctttacaaatgtgtttttacattaaaacatgagtcttatttata 7873918  T

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Target: chr2 (Bit Score: 50; Significance: 9e-20; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 40 - 204
Target Start/End: Complemental strand, 19912443 - 19912279
Alignment:
Q  40 tttgtattattctcttcacaagtgtgtctttagaattc-aatatgagtcctatttataggacacaagatgaataagtgagtgatcaagataattaaggtc 138  Q
    ||||||||||||||||||||||||| | |||   |||  |||||  |||||||||||||||||||| ||||  ||||||||||||||   |||||||| |    
T  19912443 tttgtattattctcttcacaagtgtatattttacattataatataggtcctatttataggacacaa-atgagcaagtgagtgatcaaagcaattaaggac 19912345  T
Q  139 cactaactattcactcattaatgggggttataggaaagtgaaagactaaggatggaaatccactaa 204  Q
     |||||| || || ||| |||| ||||||||||||| ||| |||| ||||| |||| |||||||||    
T  19912344 tactaaccatacattcaataataggggttataggaaggtggaagattaagggtggacatccactaa 19912279  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 127 - 204
Target Start/End: Original strand, 34111054 - 34111131
Alignment:
Q  127 ataattaaggtccactaactattcactcattaatgggggttataggaaagtgaaagactaaggatggaaatccactaa 204  Q
    ||||||||||||||||||||||||||||| ||||| | |||||||||| ||| | || |||||||||| |||||||||    
T  34111054 ataattaaggtccactaactattcactcactaatgcgagttataggaaggtggatgattaaggatggacatccactaa 34111131  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 78 - 200
Target Start/End: Complemental strand, 45276475 - 45276354
Alignment:
Q  78 aatatgagtcctatttataggacacaagatgaataagtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaaagt 177  Q
    ||||||||||||||||||||||||||| |||| ||||||| || |||| |  ||||||| |||||||| || || ||| |||   |||||||||||| ||    
T  45276475 aatatgagtcctatttataggacacaa-atgagtaagtgaatggtcaaaactattaaggaccactaaccatacattcactaacatgggttataggaaggt 45276377  T
Q  178 gaaagactaaggatggaaatcca 200  Q
    | ||||  | ||||||| |||||    
T  45276376 ggaagatgagggatggacatcca 45276354  T

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Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 11 - 103
Target Start/End: Complemental strand, 17909983 - 17909890
Alignment:
Q  11 aaagaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtg-tctttagaattcaatatgagtcctatttataggacaca 103  Q
    ||||| ||||||| |||||||||||| ||||||||||||||||||| |||||||| |||||| | |   |||| ||||||||||||||||||||    
T  17909983 aaagatgaggaaggagaagatgaaagtactttgtattattctcttctcaagtgtgttctttacattgagatataagtcctatttataggacaca 17909890  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 12 - 71
Target Start/End: Complemental strand, 10739196 - 10739137
Alignment:
Q  12 aagaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtcttta 71  Q
    |||||||| | | |||||||||||||||||||||||||||||||||||||| | ||||||    
T  10739196 aagaagagaatggagaagatgaaagcactttgtattattctcttcacaagtatatcttta 10739137  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 12 - 71
Target Start/End: Complemental strand, 15007236 - 15007178
Alignment:
Q  12 aagaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtcttta 71  Q
    |||| ||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||    
T  15007236 aagatgaggaaggagaagatgaaagcactttgtatta-tctcttcaccagtgtgtcttta 15007178  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 12 - 67
Target Start/End: Original strand, 36911928 - 36911983
Alignment:
Q  12 aagaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtc 67  Q
    |||||||||||||||||| ||||| |||||| |||||||||||||| |||||||||    
T  36911928 aagaagaggaagaagaaggtgaaaacactttttattattctcttcagaagtgtgtc 36911983  T

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Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 104
Target Start/End: Complemental strand, 10734149 - 10734068
Alignment:
Q  23 gaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaa 104  Q
    ||||||||||||| |||||||||||||||||||||||||| | |||||| |   |||| |  ||||||||||||||| ||||    
T  10734149 gaagaagatgaaaacactttgtattattctcttcacaagtatatctttacatgacaatgtaggtcctatttataggatacaa 10734068  T

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Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 151
Target Start/End: Original strand, 12145639 - 12145764
Alignment:
Q  27 aagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtccta-tttataggacacaagatgaataagtgagtgatcaa 125  Q
    |||||||||||  | |||||||| ||||||| |||||||| |||| | |   | ||||||| || |||||||||||||| ||||  ||||||||||||||    
T  12145639 aagatgaaagctttgtgtattatcctcttcagaagtgtgtttttacactaacaaatgagtcttattttataggacacaaaatgagcaagtgagtgatcaa 12145738  T
Q  126 gataattaaggtccactaactattca 151  Q
      ||||||||  ||||||||||||||    
T  12145739 agtaattaagaaccactaactattca 12145764  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 23599934 - 23599986
Alignment:
Q  12 aagaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgt 64  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||| ||||||    
T  23599934 aagaagatgaagaagaagatgaaagcattttgtattattctcttcataagtgt 23599986  T

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Target: scaffold0248 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0248
Description:

Target: scaffold0248; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 12 - 66
Target Start/End: Complemental strand, 16312 - 16258
Alignment:
Q  12 aagaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgt 66  Q
    |||||||||||||| || || |||||||||||||||||| |||||||| ||||||    
T  16312 aagaagaggaagaaaaatataaaagcactttgtattattttcttcacaggtgtgt 16258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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