View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10865A_low_322 (Length: 240)

Name: NF10865A_low_322
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10865A_low_322
NF10865A_low_322
[»] chr5 (5 HSPs)
chr5 (58-224)||(32268817-32268983)
chr5 (34-192)||(41900158-41900316)
chr5 (18-90)||(32268755-32268825)
chr5 (109-184)||(41886271-41886346)
chr5 (42-91)||(12846943-12846992)
[»] chr7 (4 HSPs)
chr7 (35-102)||(15091347-15091414)
chr7 (38-100)||(10168806-10168868)
chr7 (38-100)||(10176331-10176393)
chr7 (122-163)||(10616209-10616250)
[»] chr4 (18 HSPs)
chr4 (35-96)||(2460597-2460658)
chr4 (41-114)||(2367656-2367729)
chr4 (47-96)||(2547544-2547593)
chr4 (41-93)||(2381378-2381430)
chr4 (35-95)||(6007665-6007725)
chr4 (41-99)||(566629-566687)
chr4 (41-94)||(2525763-2525816)
chr4 (47-92)||(12124836-12124881)
chr4 (47-92)||(12126892-12126937)
chr4 (35-100)||(55907434-55907499)
chr4 (41-93)||(2486313-2486365)
chr4 (41-93)||(5035628-5035680)
chr4 (35-81)||(1547469-1547515)
chr4 (49-99)||(2376228-2376278)
chr4 (55-93)||(2380123-2380161)
chr4 (47-96)||(2472104-2472153)
chr4 (62-102)||(8445271-8445311)
chr4 (42-82)||(12121009-12121049)
[»] chr3 (2 HSPs)
chr3 (35-102)||(513426-513493)
chr3 (49-100)||(51763146-51763197)
[»] chr6 (5 HSPs)
chr6 (41-101)||(14821628-14821688)
chr6 (41-93)||(6395781-6395833)
chr6 (45-93)||(6427432-6427480)
chr6 (47-81)||(6437161-6437195)
chr6 (41-83)||(7993319-7993361)
[»] chr8 (2 HSPs)
chr8 (41-100)||(32152212-32152271)
chr8 (47-93)||(39516869-39516915)
[»] chr2 (2 HSPs)
chr2 (35-100)||(1036176-1036241)
chr2 (47-100)||(44575177-44575230)
[»] chr1 (3 HSPs)
chr1 (41-90)||(15837967-15838016)
chr1 (41-100)||(33161439-33161498)
chr1 (49-93)||(52085556-52085600)


Alignment Details
Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 58 - 224
Target Start/End: Original strand, 32268817 - 32268983
Alignment:
Q  58 gatggagagtaactgtttggagacgatggagagagatttcaagcatcgattgttgtctttcaagaatttgaagacacattcccaacactcatctggtaga 157  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  32268817 gatggagagtaactgtttggagacgatggagagagatttcaagcatcgattgttgtctttcaagaatttgaagacacattcccaacactcatctggtaaa 32268916  T
Q  158 tatgaaccagaaatcattgattttcttcttcttttttcatcactggaccccaatgttcttcttcttc 224  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  32268917 tatgaaccagaaatcattgattttcttcttctttttgcatcactggaccgcaatgttcttcttcttc 32268983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 34 - 192
Target Start/End: Complemental strand, 41900316 - 41900158
Alignment:
Q  34 aagagataatcgaagacggttggtgatggagagtaactgtttggagacgatggagagagatttcaagcatcgattgttgtctttcaagaatttgaagaca 133  Q
    |||||| |||||||||  ||||||||||||||| ||||||||||||||||  ||||||||||||||| |  |||| | |||||| | |||||||||||||    
T  41900316 aagagagaatcgaagagtgttggtgatggagagaaactgtttggagacgagtgagagagatttcaagtagtgattatcgtctttgaggaatttgaagaca 41900217  T
Q  134 cattcccaacactcatctggtagatatgaaccagaaatcattgattttcttcttctttt 192  Q
    |||||||||||||||||||||| ||||||||||||| | || |||||||||||| ||||    
T  41900216 cattcccaacactcatctggtaaatatgaaccagaacttatcgattttcttcttttttt 41900158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 32268755 - 32268825
Alignment:
Q  18 ggatcatagactgtgaaagagataatcgaagacggttggtgatggagagtaactgtttggagacgatggagag 90  Q
    |||||||||||||||| |||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  32268755 ggatcatagactgtgagagaga--atcgaagacggttggtgatggagagtaactgtttggagacgatggagag 32268825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 109 - 184
Target Start/End: Complemental strand, 41886346 - 41886271
Alignment:
Q  109 gttgtctttcaagaatttgaagacacattcccaacactcatctggtagatatgaaccagaaatcattgattttctt 184  Q
    ||||||||||| |||||||||||||||||||||||||||||| |||| |||  |||||  |||||||| |||||||    
T  41886346 gttgtctttcaggaatttgaagacacattcccaacactcatcaggtaaatagaaaccaccaatcattgtttttctt 41886271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 91
Target Start/End: Original strand, 12846943 - 12846992
Alignment:
Q  42 atcgaagacggttggtgatggagagtaactgtttggagacgatggagaga 91  Q
    |||| |||||||||||||||||||| ||||| ||||| |||| |||||||    
T  12846943 atcggagacggttggtgatggagaggaactgcttggaaacgagggagaga 12846992  T

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Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 35 - 102
Target Start/End: Complemental strand, 15091414 - 15091347
Alignment:
Q  35 agagataatcgaagacggttggtgatggagagtaactgtttggagacgatggagagagatttcaagca 102  Q
    ||||| ||| |||||| ||||||||||||||| |||||||||||||||| ||||||||| ||||||||    
T  15091414 agagaaaatagaagactgttggtgatggagaggaactgtttggagacgagggagagagaattcaagca 15091347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 38 - 100
Target Start/End: Complemental strand, 10168868 - 10168806
Alignment:
Q  38 gataatcgaagacggttggtgatggagagtaactgtttggagacgatggagagagatttcaag 100  Q
    ||||||||||||  ||||||||||||||| |||||||||||||| | ||| ||||| ||||||    
T  10168868 gataatcgaagagtgttggtgatggagaggaactgtttggagacaagggatagagaattcaag 10168806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 38 - 100
Target Start/End: Complemental strand, 10176393 - 10176331
Alignment:
Q  38 gataatcgaagacggttggtgatggagagtaactgtttggagacgatggagagagatttcaag 100  Q
    ||||||||||||  ||||||||||||||| |||||||||||||| | ||| ||||| ||||||    
T  10176393 gataatcgaagagtgttggtgatggagaggaactgtttggagacaagggatagagaattcaag 10176331  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 163
Target Start/End: Original strand, 10616209 - 10616250
Alignment:
Q  122 aatttgaagacacattcccaacactcatctggtagatatgaa 163  Q
    |||||||||| |||||||||||||||||| |||| |||||||    
T  10616209 aatttgaagatacattcccaacactcatcaggtaaatatgaa 10616250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 35 - 96
Target Start/End: Original strand, 2460597 - 2460658
Alignment:
Q  35 agagataatcgaagacggttggtgatggagagtaactgtttggagacgatggagagagattt 96  Q
    ||||| ||||| ||||| |||||||||||||| |||||||||||||| ||||||||||||||    
T  2460597 agagagaatcggagacgattggtgatggagaggaactgtttggagaccatggagagagattt 2460658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 114
Target Start/End: Complemental strand, 2367729 - 2367656
Alignment:
Q  41 aatcgaagacggttggtgatggagagtaactgtttggagacgatggagagagatttcaagcatcgattgttgtc 114  Q
    ||||| |||||||||||||||||||| || ||||||||||||||||| |||| || |||| | || ||||||||    
T  2367729 aatcggagacggttggtgatggagagaaattgtttggagacgatggaaagaggttccaagtagcggttgttgtc 2367656  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 2547544 - 2547593
Alignment:
Q  47 agacggttggtgatggagagtaactgtttggagacgatggagagagattt 96  Q
    ||||||||||||||||| || ||||||||||||||||||||||| |||||    
T  2547544 agacggttggtgatggacagaaactgtttggagacgatggagagcgattt 2547593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 41 - 93
Target Start/End: Complemental strand, 2381430 - 2381378
Alignment:
Q  41 aatcgaagacggttggtgatggagagtaactgtttggagacgatggagagaga 93  Q
    ||||| |||| ||||||||| |||||||||||||||||||||||||| |||||    
T  2381430 aatcggagactgttggtgatcgagagtaactgtttggagacgatggaaagaga 2381378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 95
Target Start/End: Original strand, 6007665 - 6007725
Alignment:
Q  35 agagataatcgaagacggttggtgatggagagtaactgtttggagacgatggagagagatt 95  Q
    ||||| ||||| |||| ||||||||||||||| |||||||| ||||||| |||||||||||    
T  6007665 agagagaatcggagactgttggtgatggagaggaactgtttcgagacgagggagagagatt 6007725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 41 - 99
Target Start/End: Original strand, 566629 - 566687
Alignment:
Q  41 aatcgaagacggttggtgatggagagtaactgtttggagacgatggagagagatttcaa 99  Q
    |||||||||| || |||||||||||| |||||||||||||| | ||||||||| |||||    
T  566629 aatcgaagactgtcggtgatggagagaaactgtttggagactaaggagagagaattcaa 566687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 94
Target Start/End: Original strand, 2525763 - 2525816
Alignment:
Q  41 aatcgaagacggttggtgatggagagtaactgtttggagacgatggagagagat 94  Q
    |||||||||| |||||||||||| || |||||||| ||||||| ||||||||||    
T  2525763 aatcgaagactgttggtgatggacagaaactgttttgagacgagggagagagat 2525816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 92
Target Start/End: Original strand, 12124836 - 12124881
Alignment:
Q  47 agacggttggtgatggagagtaactgtttggagacgatggagagag 92  Q
    |||||||||||||||||||| || ||||||||||| ||||||||||    
T  12124836 agacggttggtgatggagagaaattgtttggagacaatggagagag 12124881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 92
Target Start/End: Original strand, 12126892 - 12126937
Alignment:
Q  47 agacggttggtgatggagagtaactgtttggagacgatggagagag 92  Q
    |||||||||||||||||||| || ||||||||||| ||||||||||    
T  12126892 agacggttggtgatggagagaaattgtttggagacaatggagagag 12126937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 100
Target Start/End: Complemental strand, 55907499 - 55907434
Alignment:
Q  35 agagataatcgaagacggttggtgatggagagtaactgtttggagacgatggagagagatttcaag 100  Q
    ||||| |||||||||  ||||||||  ||||| ||||||||||||||| | |||||||||||||||    
T  55907499 agagagaatcgaagagtgttggtgactgagagaaactgtttggagacggttgagagagatttcaag 55907434  T

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Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 93
Target Start/End: Original strand, 2486313 - 2486365
Alignment:
Q  41 aatcgaagacggttggtgatggagagtaactgtttggagacgatggagagaga 93  Q
    ||||| ||||||||||||||||| || |||||||| ||||||| |||||||||    
T  2486313 aatcggagacggttggtgatggacagaaactgttttgagacgagggagagaga 2486365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 93
Target Start/End: Original strand, 5035628 - 5035680
Alignment:
Q  41 aatcgaagacggttggtgatggagagtaactgtttggagacgatggagagaga 93  Q
    |||||||||||||||||||||||||| |||||||| || |||| ||| |||||    
T  5035628 aatcgaagacggttggtgatggagagaaactgttttgaaacgaaggaaagaga 5035680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 81
Target Start/End: Complemental strand, 1547515 - 1547469
Alignment:
Q  35 agagataatcgaagacggttggtgatggagagtaactgtttggagac 81  Q
    ||||| ||||| |||||||||||||||||||| || |||||||||||    
T  1547515 agagagaatcggagacggttggtgatggagaggaattgtttggagac 1547469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 99
Target Start/End: Complemental strand, 2376278 - 2376228
Alignment:
Q  49 acggttggtgatggagagtaactgtttggagacgatggagagagatttcaa 99  Q
    |||||||||||||||||| ||   ||||||||||||||||||||| |||||    
T  2376278 acggttggtgatggagagaaaagttttggagacgatggagagagacttcaa 2376228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 93
Target Start/End: Complemental strand, 2380161 - 2380123
Alignment:
Q  55 ggtgatggagagtaactgtttggagacgatggagagaga 93  Q
    |||||| |||||||||||||||||||||||||| |||||    
T  2380161 ggtgatcgagagtaactgtttggagacgatggaaagaga 2380123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 2472104 - 2472153
Alignment:
Q  47 agacggttggtgatggagagtaactgtttggagacgatggagagagattt 96  Q
    ||||| |||||||||||||  |||||||||||||| ||||| ||||||||    
T  2472104 agacgattggtgatggagaaaaactgtttggagaccatggaaagagattt 2472153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 102
Target Start/End: Complemental strand, 8445311 - 8445271
Alignment:
Q  62 gagagtaactgtttggagacgatggagagagatttcaagca 102  Q
    |||||||||||||| ||||||||||||||||| || |||||    
T  8445311 gagagtaactgttttgagacgatggagagagactttaagca 8445271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 82
Target Start/End: Complemental strand, 12121049 - 12121009
Alignment:
Q  42 atcgaagacggttggtgatggagagtaactgtttggagacg 82  Q
    ||||||||||||||||||||||||| ||||| || ||||||    
T  12121049 atcgaagacggttggtgatggagaggaactgctttgagacg 12121009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 35 - 102
Target Start/End: Complemental strand, 513493 - 513426
Alignment:
Q  35 agagataatcgaagacggttggtgatggagagtaactgtttggagacgatggagagagatttcaagca 102  Q
    ||||| ||||| |||  |||||||||||||||||||||||| ||||||  ||||||||||||||||||    
T  513493 agagagaatcggagattgttggtgatggagagtaactgttttgagacggcggagagagatttcaagca 513426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 100
Target Start/End: Complemental strand, 51763197 - 51763146
Alignment:
Q  49 acggttggtgatggagagtaactgtttggagacgatggagagagatttcaag 100  Q
    ||||| |||||||||||| ||||||||||| |||||||||||||| ||||||    
T  51763197 acggtgggtgatggagaggaactgtttggaaacgatggagagagaattcaag 51763146  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 41 - 101
Target Start/End: Original strand, 14821628 - 14821688
Alignment:
Q  41 aatcgaagacggttggtgatggagagtaactgtttggagacgatggagagagatttcaagc 101  Q
    ||||||||||| |||||||| ||||| ||||| |||||||||| ||||||| |||||||||    
T  14821628 aatcgaagacgattggtgatagagaggaactgcttggagacgagggagagacatttcaagc 14821688  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 93
Target Start/End: Original strand, 6395781 - 6395833
Alignment:
Q  41 aatcgaagacggttggtgatggagagtaactgtttggagacgatggagagaga 93  Q
    ||||||||| | |||||||||||||| ||||| |||||||||| |||||||||    
T  6395781 aatcgaagatgattggtgatggagaggaactgcttggagacgagggagagaga 6395833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 93
Target Start/End: Original strand, 6427432 - 6427480
Alignment:
Q  45 gaagacggttggtgatggagagtaactgtttggagacgatggagagaga 93  Q
    ||||||| |||||||||||||| ||||| |||||||||| |||||||||    
T  6427432 gaagacgattggtgatggagaggaactgcttggagacgagggagagaga 6427480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 81
Target Start/End: Original strand, 6437161 - 6437195
Alignment:
Q  47 agacggttggtgatggagagtaactgtttggagac 81  Q
    |||||||||||||||||||| ||||||||||||||    
T  6437161 agacggttggtgatggagaggaactgtttggagac 6437195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 83
Target Start/End: Complemental strand, 7993361 - 7993319
Alignment:
Q  41 aatcgaagacggttggtgatggagagtaactgtttggagacga 83  Q
    ||||| |||||| ||||||||||||| ||||||||||||||||    
T  7993361 aatcggagacggctggtgatggagaggaactgtttggagacga 7993319  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 100
Target Start/End: Original strand, 32152212 - 32152271
Alignment:
Q  41 aatcgaagacggttggtgatggagagtaactgtttggagacgatggagagagatttcaag 100  Q
    ||||| |||| ||||||||||||||| |||||||||||||||| |||||| || ||||||    
T  32152212 aatcggagactgttggtgatggagaggaactgtttggagacgagggagagtgaattcaag 32152271  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 93
Target Start/End: Original strand, 39516869 - 39516915
Alignment:
Q  47 agacggttggtgatggagagtaactgtttggagacgatggagagaga 93  Q
    |||||||||||||||| ||| || ||| |||||||||||||||||||    
T  39516869 agacggttggtgatggcgagaaattgtctggagacgatggagagaga 39516915  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 100
Target Start/End: Complemental strand, 1036241 - 1036176
Alignment:
Q  35 agagataatcgaagacggttggtgatggagagtaactgtttggagacgatggagagagatttcaag 100  Q
    ||||| |||||||||  ||||||||  ||||| ||||||||||||||| | |||||||||||||||    
T  1036241 agagagaatcgaagagtgttggtgactgagagaaactgtttggagacggttgagagagatttcaag 1036176  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 44575230 - 44575177
Alignment:
Q  47 agacggttggtgatggagagtaactgtttggagacgatggagagagatttcaag 100  Q
    ||||| |||||||| ||||| |||||||| ||||||||||||||||| ||||||    
T  44575230 agacgattggtgattgagagaaactgttttgagacgatggagagagacttcaag 44575177  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 90
Target Start/End: Complemental strand, 15838016 - 15837967
Alignment:
Q  41 aatcgaagacggttggtgatggagagtaactgtttggagacgatggagag 90  Q
    ||||| |||||||||||||||||||| |||||||||||||| || |||||    
T  15838016 aatcggagacggttggtgatggagagaaactgtttggagaccatcgagag 15837967  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 100
Target Start/End: Original strand, 33161439 - 33161498
Alignment:
Q  41 aatcgaagacggttggtgatggagagtaactgtttggagacgatggagagagatttcaag 100  Q
    ||||||||||  || ||||||||||| |||||||||||||||| ||| ||||| ||||||    
T  33161439 aatcgaagactattagtgatggagagaaactgtttggagacgagggatagagaattcaag 33161498  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 52085556 - 52085600
Alignment:
Q  49 acggttggtgatggagagtaactgtttggagacgatggagagaga 93  Q
    ||||||||||||||| || |||| ||||||||||||||| |||||    
T  52085556 acggttggtgatggaaaggaactttttggagacgatggaaagaga 52085600  T

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