View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10865A_low_327 (Length: 239)

Name: NF10865A_low_327
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10865A_low_327
NF10865A_low_327
[»] chr8 (9 HSPs)
chr8 (1-123)||(11876208-11876331)
chr8 (1-123)||(11891215-11891338)
chr8 (189-231)||(11876096-11876138)
chr8 (189-231)||(11891103-11891145)
chr8 (7-72)||(31445473-31445538)
chr8 (9-49)||(35173232-35173272)
chr8 (6-70)||(38745029-38745093)
chr8 (6-69)||(31267493-31267556)
chr8 (6-67)||(33299896-33299957)
[»] chr1 (9 HSPs)
chr1 (6-72)||(43020917-43020983)
chr1 (6-70)||(11066893-11066957)
chr1 (6-70)||(34342493-34342557)
chr1 (4-70)||(13241236-13241302)
chr1 (6-86)||(26767996-26768076)
chr1 (6-39)||(24321221-24321254)
chr1 (6-70)||(3156066-3156130)
chr1 (6-70)||(4968481-4968545)
chr1 (6-86)||(38340277-38340356)
[»] chr7 (11 HSPs)
chr7 (6-86)||(42850968-42851047)
chr7 (7-86)||(13701666-13701745)
chr7 (7-71)||(13637994-13638058)
chr7 (6-69)||(2766441-2766504)
chr7 (6-69)||(25611002-25611065)
chr7 (6-68)||(9217879-9217941)
chr7 (15-70)||(10040104-10040159)
chr7 (6-69)||(38636141-38636204)
chr7 (7-72)||(33429278-33429344)
chr7 (7-69)||(33797362-33797424)
chr7 (6-66)||(29356840-29356899)
[»] chr4 (8 HSPs)
chr4 (6-69)||(37442162-37442224)
chr4 (6-72)||(21392962-21393028)
chr4 (6-86)||(12294776-12294856)
chr4 (6-72)||(17942639-17942705)
chr4 (6-69)||(16506759-16506822)
chr4 (6-69)||(44277154-44277217)
chr4 (6-49)||(53353977-53354020)
chr4 (6-69)||(53500569-53500632)
[»] chr5 (6 HSPs)
chr5 (6-86)||(39585207-39585287)
chr5 (6-69)||(6205669-6205732)
chr5 (6-49)||(7734014-7734057)
chr5 (6-68)||(11131449-11131511)
chr5 (6-64)||(42422500-42422558)
chr5 (6-70)||(17822012-17822076)
[»] chr3 (6 HSPs)
chr3 (6-70)||(49757926-49757990)
chr3 (6-73)||(4846555-4846622)
chr3 (8-70)||(14771136-14771197)
chr3 (13-70)||(17037801-17037858)
chr3 (10-86)||(21585656-21585732)
chr3 (6-67)||(17035403-17035464)
[»] chr2 (10 HSPs)
chr2 (6-69)||(9045028-9045091)
chr2 (6-73)||(43442296-43442363)
chr2 (6-69)||(41207640-41207703)
chr2 (7-70)||(44856733-44856796)
chr2 (6-70)||(4552535-4552600)
chr2 (6-69)||(20111161-20111223)
chr2 (6-68)||(38421128-38421190)
chr2 (6-86)||(11550120-11550201)
chr2 (6-86)||(11538607-11538687)
chr2 (18-70)||(21564197-21564248)
[»] scaffold0025 (1 HSPs)
scaffold0025 (6-69)||(11840-11903)
[»] chr6 (2 HSPs)
chr6 (10-69)||(8174377-8174436)
chr6 (8-69)||(22793127-22793187)


Alignment Details
Target: chr8 (Bit Score: 96; Significance: 3e-47; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 11876331 - 11876208
Alignment:
Q  1 aagagttatataaaatatcgtttgcaatttacacgcaaaaattctataatatttcgttgataatctacacacgctatcgcaat-aaatgattcctattaa 99  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||| ||| ||||||||||||    
T  11876331 aagagttatataaaatatcgtttgcaatttacacgcaaaatttctataatatttcgttgataatctacacgcgctagcgcaataaaaagattcctattaa 11876232  T
Q  100 aacgtaaatcccacaaaacttcat 123  Q
    ||||||| ||||||||||||||||    
T  11876231 aacgtaattcccacaaaacttcat 11876208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 11891338 - 11891215
Alignment:
Q  1 aagagttatataaaatatcgtttgcaatttacacgcaaaaattctataatatttcgttgataatctacacacgctatcgcaat-aaatgattcctattaa 99  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||| ||| ||||||||||||    
T  11891338 aagagttatataaaatatcgtttgcaatttacacgcaaaatttctataatatttcgttgataatctacacgcgctagcgcaataaaaagattcctattaa 11891239  T
Q  100 aacgtaaatcccacaaaacttcat 123  Q
    ||||||| ||||||||||||||||    
T  11891238 aacgtaattcccacaaaacttcat 11891215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 189 - 231
Target Start/End: Complemental strand, 11876138 - 11876096
Alignment:
Q  189 tttgactcagttggtaacaagttaactctctctcctctatgat 231  Q
    |||||||||||||||||||||||||||||||| ||||||||||    
T  11876138 tttgactcagttggtaacaagttaactctctcacctctatgat 11876096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 189 - 231
Target Start/End: Complemental strand, 11891145 - 11891103
Alignment:
Q  189 tttgactcagttggtaacaagttaactctctctcctctatgat 231  Q
    |||||||||||||||||||||||||||||||| ||||||||||    
T  11891145 tttgactcagttggtaacaagttaactctctcacctctatgat 11891103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 31445473 - 31445538
Alignment:
Q  7 tatataaaatatcgtttgcaatttacacgcaaaaattctataatatttcgttgataatctacacac 72  Q
    |||||||||||||||||| ||||||||||  ||| |||||||| || ||||| |||||||||||||    
T  31445473 tatataaaatatcgtttgtaatttacacgttaaatttctataaaatatcgttaataatctacacac 31445538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 35173272 - 35173232
Alignment:
Q  9 tataaaatatcgtttgcaatttacacgcaaaaattctataa 49  Q
    |||||||||||||||| ||||||||||||||| ||||||||    
T  35173272 tataaaatatcgtttgtaatttacacgcaaaatttctataa 35173232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 38745093 - 38745029
Alignment:
Q  6 ttatataaaatatcgtttgcaatttacacgcaaaaattctataatatttcgttgataatctacac 70  Q
    |||||| |||||||||||| ||||||||||||||| ||||||||  | || ||| ||||||||||    
T  38745093 ttatattaaatatcgtttgtaatttacacgcaaaatttctataaattatctttggtaatctacac 38745029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 69
Target Start/End: Complemental strand, 31267556 - 31267493
Alignment:
Q  6 ttatataaaatatcgtttgcaatttacacgcaaaaattctataatatttcgttgataatctaca 69  Q
    ||||||||||||||||||| ||||||| | ||||| |||||||| || | ||| ||||||||||    
T  31267556 ttatataaaatatcgtttgtaatttacgcacaaaatttctataaaatattgttaataatctaca 31267493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 67
Target Start/End: Complemental strand, 33299957 - 33299896
Alignment:
Q  6 ttatataaaatatcgtttgcaatttacacgcaaaaattctataatatttcgttgataatcta 67  Q
    ||||||||||| ||||||| |||||||||| |||| || ||||| ||  |||||||||||||    
T  33299957 ttatataaaatgtcgtttgtaatttacacgtaaaatttttataaaataacgttgataatcta 33299896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 6 - 72
Target Start/End: Original strand, 43020917 - 43020983
Alignment:
Q  6 ttatataaaatatcgtttgcaatttacacgcaaaaattctataatatttcgttgataatctacacac 72  Q
    |||||||||||||| |||| ||||||||||||||| |||||||| || |||||||||||||||||||    
T  43020917 ttatataaaatatcatttgtaatttacacgcaaaatttctataaaatatcgttgataatctacacac 43020983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 11066957 - 11066893
Alignment:
Q  6 ttatataaaatatcgtttgcaatttacacgcaaaaattctataatatttcgttgataatctacac 70  Q
    ||||||||||||| ||||| ||||||||||||||| |||||||| || |||||||||||||||||    
T  11066957 ttatataaaatattgtttgtaatttacacgcaaaatttctataaaatatcgttgataatctacac 11066893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 70
Target Start/End: Original strand, 34342493 - 34342557
Alignment:
Q  6 ttatataaaatatcgtttgcaatttacacgcaaaaattctataatatttcgttgataatctacac 70  Q
    ||||||||||||||||||| ||||||||||||||| || ||||| || ||||| |||||||||||    
T  34342493 ttatataaaatatcgtttgtaatttacacgcaaaatttatataaaatatcgttaataatctacac 34342557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 13241302 - 13241236
Alignment:
Q  4 agttatataaaatatcgtttgcaatttacacgcaaaaattctataatatttcgttgataatctacac 70  Q
    ||||||||||||||| ||||| ||||||||| ||||| ||||| || || | |||||||||||||||    
T  13241302 agttatataaaatattgtttgtaatttacactcaaaatttctacaaaatattgttgataatctacac 13241236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 86
Target Start/End: Complemental strand, 26768076 - 26767996
Alignment:
Q  6 ttatataaaatatcgtttgcaatttacacgcaaaaattctataatatttcgttgataatctacacacgctatcgcaataaa 86  Q
    ||||||||||||| ||||| | ||||||||||||| |||||||| |  |||||||||||| |||  || || |||||||||    
T  26768076 ttatataaaatattgtttgtactttacacgcaaaatttctataaaacatcgttgataatcgacatgcgttagcgcaataaa 26767996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 39
Target Start/End: Original strand, 24321221 - 24321254
Alignment:
Q  6 ttatataaaatatcgtttgcaatttacacgcaaa 39  Q
    ||||||||||||||||||| ||||||||||||||    
T  24321221 ttatataaaatatcgtttgtaatttacacgcaaa 24321254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 3156130 - 3156066
Alignment:
Q  6 ttatataaaatatcgtttgcaatttacacgcaaaaattctataatatttcgttgataatctacac 70  Q
    ||||||||||||||||||| ||| || |||||||| || || || || ||||||||||| |||||    
T  3156130 ttatataaaatatcgtttgtaatctagacgcaaaatttatacaaaatatcgttgataatatacac 3156066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 4968545 - 4968481
Alignment:
Q  6 ttatataaaatatcgtttgcaatttacacgcaaaaattctataatatttcgttgataatctacac 70  Q
    |||||||||||||| |||| | |||| |  ||||| |||||||| || |||||||||||||||||    
T  4968545 ttatataaaatatcatttgtattttataaacaaaatttctataaaatatcgttgataatctacac 4968481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 86
Target Start/End: Original strand, 38340277 - 38340356
Alignment:
Q  6 ttatataaaatatcgtttgcaatttacacgcaaaaattctataatatttcgttgataatctacacacgctatcgcaataaa 86  Q
    ||||||||||||| ||||| ||||||||||| ||| ||| |||| || || |||||||| ||||| || || |||||||||    
T  38340277 ttatataaaatattgtttgtaatttacacgc-aaatttcgataaaatatcattgataatatacacgcgttagcgcaataaa 38340356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 6 - 86
Target Start/End: Complemental strand, 42851047 - 42850968
Alignment:
Q  6 ttatataaaatatcgtttgcaatttacacgcaaaaattctataatatttcgttgataatctacacacgctatcgcaataaa 86  Q
    ||||||||||| ||||||| |||||||| |||||  |||||||| || ||||||||||||||||||||||| |||||||||    
T  42851047 ttatataaaatctcgtttgtaatttacatgcaaat-ttctataaaatatcgttgataatctacacacgctagcgcaataaa 42850968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 7 - 86
Target Start/End: Complemental strand, 13701745 - 13701666
Alignment:
Q  7 tatataaaatatcgtttgcaatttacacgcaaaaattctataatatttcgttgataatctacacacgctatcgcaataaa 86  Q
    |||||||||||| ||||| ||||||||||||||| |||||||| || ||||| |||||||||||| | || |||||||||    
T  13701745 tatataaaatattgtttgtaatttacacgcaaaatttctataaaatatcgttcataatctacacatgttagcgcaataaa 13701666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 13638058 - 13637994
Alignment:
Q  7 tatataaaatatcgtttgcaatttacacgcaaaaattctataatatttcgttgataatctacaca 71  Q
    |||||||||||| ||||| ||||||||||||||| |||||||| || ||||| ||||||||||||    
T  13638058 tatataaaatattgtttgtaatttacacgcaaaatttctataaaatatcgttcataatctacaca 13637994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 6 - 69
Target Start/End: Original strand, 2766441 - 2766504
Alignment:
Q  6 ttatataaaatatcgtttgcaatttacacgcaaaaattctataatatttcgttgataatctaca 69  Q
    ||||||||||||||||||| ||||||||  ||||| |||||||| || ||||||||||||||||    
T  2766441 ttatataaaatatcgtttgtaatttacaatcaaaatttctataaaatatcgttgataatctaca 2766504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 6 - 69
Target Start/End: Complemental strand, 25611065 - 25611002
Alignment:
Q  6 ttatataaaatatcgtttgcaatttacacgcaaaaattctataatatttcgttgataatctaca 69  Q
    |||||||||||||| |||| ||||||||||||||| |||||||| || || |||||||||||||    
T  25611065 ttatataaaatatcatttgtaatttacacgcaaaatttctataaaatatcattgataatctaca 25611002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 6 - 68
Target Start/End: Original strand, 9217879 - 9217941
Alignment:
Q  6 ttatataaaatatcgtttgcaatttacacgcaaaaattctataatatttcgttgataatctac 68  Q
    ||||||||||||||||||| | |||||||| |||| |||||||| || |||||||||||||||    
T  9217879 ttatataaaatatcgtttgtagtttacacgtaaaatttctataaaatatcgttgataatctac 9217941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 10040159 - 10040104
Alignment:
Q  15 atatcgtttgcaatttacacgcaaaaattctataatatttcgttgataatctacac 70  Q
    |||||||||  ||||||||||||||| |||||||| || |||||||||||||||||    
T  10040159 atatcgtttaaaatttacacgcaaaatttctataaaatatcgttgataatctacac 10040104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 69
Target Start/End: Complemental strand, 38636204 - 38636141
Alignment:
Q  6 ttatataaaatatcgtttgcaatttacacgcaaaaattctataatatttcgttgataatctaca 69  Q
    ||||||||||||||||||| ||| | ||||||||| |||||||| || ||||| ||||||||||    
T  38636204 ttatataaaatatcgtttgtaatatgcacgcaaaatttctataaaatgtcgtttataatctaca 38636141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 33429278 - 33429344
Alignment:
Q  7 tatataaaatatcgtttgcaatttacacgcaaaa-attctataatatttcgttgataatctacacac 72  Q
    |||||||||||||||||  |||||||| ||||||  ||||||||  | |||||||||||||||||||    
T  33429278 tatataaaatatcgtttaaaatttacatgcaaaattttctataaattatcgttgataatctacacac 33429344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 69
Target Start/End: Original strand, 33797362 - 33797424
Alignment:
Q  7 tatataaaatatcgtttgcaatttacacgcaaaaattctataatatttcgttgataatctaca 69  Q
    ||||||||||||| |||| ||||||||| ||||| |||||||| || |  |||||||||||||    
T  33797362 tatataaaatatcatttgtaatttacacacaaaacttctataaaatatatttgataatctaca 33797424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 29356899 - 29356840
Alignment:
Q  6 ttatataaaatatcgtttgcaatttacacgcaaaaattctataatatttcgttgataatct 66  Q
    |||||||||||||  |||| ||||||||||||||| |||||||| | | ||||||||||||    
T  29356899 ttatataaaatattatttgtaatttacacgcaaaatttctataa-aatacgttgataatct 29356840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 6 - 69
Target Start/End: Original strand, 37442162 - 37442224
Alignment:
Q  6 ttatataaaatatcgtttgcaatttacacgcaaaaattctataatatttcgttgataatctaca 69  Q
    ||||||||||||||||||| ||||||||||||||| |||||||| || ||||||||||||||||    
T  37442162 ttatataaaatatcgtttgtaatttacacgcaaaatttctataa-atatcgttgataatctaca 37442224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 72
Target Start/End: Complemental strand, 21393028 - 21392962
Alignment:
Q  6 ttatataaaatatcgtttgcaatttacacgcaaaaattctataatatttcgttgataatctacacac 72  Q
    ||||||||||||| ||||| ||||||||||||||| |||||||| || | |||||||||||||||||    
T  21393028 ttatataaaatattgtttgtaatttacacgcaaaatttctataaaatattgttgataatctacacac 21392962  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 86
Target Start/End: Original strand, 12294776 - 12294856
Alignment:
Q  6 ttatataaaatatcgtttgcaatttacacgcaaaaattctataatatttcgttgataatctacacacgctatcgcaataaa 86  Q
    |||||||||| |||||||| ||||||||||||||| |||||||| || ||||||||| ||||||  || || |||||||||    
T  12294776 ttatataaaaaatcgtttgtaatttacacgcaaaatttctataaaatatcgttgatagtctacaagcgttagcgcaataaa 12294856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 6 - 72
Target Start/End: Original strand, 17942639 - 17942705
Alignment:
Q  6 ttatataaaatatcgtttgcaatttacacgcaaaaattctataatatttcgttgataatctacacac 72  Q
    ||||||||||||||||||| ||||||||| ||||| |||||||| ||  |||||||||| |||||||    
T  17942639 ttatataaaatatcgtttgtaatttacacacaaaatttctataaaataccgttgataatttacacac 17942705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 69
Target Start/End: Original strand, 16506759 - 16506822
Alignment:
Q  6 ttatataaaatatcgtttgcaatttacacgcaaaaattctataatatttcgttgataatctaca 69  Q
    |||||||||||||  |||| |||||||||| |||| |||||||| || ||||||||||||||||    
T  16506759 ttatataaaatattatttgtaatttacacgtaaaatttctataaaatatcgttgataatctaca 16506822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 69
Target Start/End: Complemental strand, 44277217 - 44277154
Alignment:
Q  6 ttatataaaatatcgtttgcaatttacacgcaaaaattctataatatttcgttgataatctaca 69  Q
    ||||||||||||||||||| |||||||||| |||| |||||||| ||  | |||||||||||||    
T  44277217 ttatataaaatatcgtttgtaatttacacgtaaaatttctataaaataccattgataatctaca 44277154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 49
Target Start/End: Complemental strand, 53354020 - 53353977
Alignment:
Q  6 ttatataaaatatcgtttgcaatttacacgcaaaaattctataa 49  Q
    ||||||||||||||||||| |||||||| |||||| ||||||||    
T  53354020 ttatataaaatatcgtttgtaatttacatgcaaaatttctataa 53353977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 69
Target Start/End: Original strand, 53500569 - 53500632
Alignment:
Q  6 ttatataaaatatcgtttgcaatttacacgcaaaaattctataatatttcgttgataatctaca 69  Q
    ||||||||||||||||||  ||||||  ||||||| |||||||| || | ||||||||||||||    
T  53500569 ttatataaaatatcgtttataatttattcgcaaaatttctataaaatatagttgataatctaca 53500632  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 86
Target Start/End: Original strand, 39585207 - 39585287
Alignment:
Q  6 ttatataaaatatcgtttgcaatttacacgcaaaaattctataatatttcgttgataatctacacacgctatcgcaataaa 86  Q
    |||||||||| |||||||| ||||||||||||||| || ||||| || | |||||||||||||||| | || |||||||||    
T  39585207 ttatataaaaaatcgtttgtaatttacacgcaaaatttatataaaatatagttgataatctacacaagttagcgcaataaa 39585287  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 69
Target Start/End: Complemental strand, 6205732 - 6205669
Alignment:
Q  6 ttatataaaatatcgtttgcaatttacacgcaaaaattctataatatttcgttgataatctaca 69  Q
    ||||||||||||||||||| ||||||||  ||||| |||||||| || || |||||| ||||||    
T  6205732 ttatataaaatatcgtttgtaatttacatacaaaatttctataaaatatcattgatattctaca 6205669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 49
Target Start/End: Complemental strand, 7734057 - 7734014
Alignment:
Q  6 ttatataaaatatcgtttgcaatttacacgcaaaaattctataa 49  Q
    |||||||||||||| |||| ||||||||||||||| ||||||||    
T  7734057 ttatataaaatatcatttgtaatttacacgcaaaatttctataa 7734014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 68
Target Start/End: Complemental strand, 11131511 - 11131449
Alignment:
Q  6 ttatataaaatatcgtttgcaatttacacgcaaaaattctataatatttcgttgataatctac 68  Q
    ||||| ||||||| ||||| ||||||||||||||  || ||||| || |||||||||||||||    
T  11131511 ttatacaaaatattgtttgtaatttacacgcaaattttttataacatatcgttgataatctac 11131449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 64
Target Start/End: Complemental strand, 42422558 - 42422500
Alignment:
Q  6 ttatataaaatatcgtttgcaatttacacgcaaaaattctataatatttcgttgataat 64  Q
    ||||||||||| ||||||| ||||||||||||||| || ||||| || | |||||||||    
T  42422558 ttatataaaatgtcgtttgtaatttacacgcaaaatttatataaaatattgttgataat 42422500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 17822076 - 17822012
Alignment:
Q  6 ttatataaaatatcgtttgcaatttacacgcaaaaattctataatatttcgttgataatctacac 70  Q
    |||||||||||||| |||| |||||||| ||| || |||||||| || | ||| |||||||||||    
T  17822076 ttatataaaatatcatttgtaatttacatgcataatttctataaaatattgttaataatctacac 17822012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 49757990 - 49757926
Alignment:
Q  6 ttatataaaatatcgtttgcaatttacacgcaaaaattctataatatttcgttgataatctacac 70  Q
    ||||||||| ||||||||| ||||||||||||||| |||||||| || || ||||||||||||||    
T  49757990 ttatataaattatcgtttgtaatttacacgcaaaatttctataaaatatcattgataatctacac 49757926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 73
Target Start/End: Original strand, 4846555 - 4846622
Alignment:
Q  6 ttatataaaatatcgtttgcaatttacacgcaaaaattctataatatttcgttgataatctacacacg 73  Q
    ||||||||||||||| ||| ||||||||||||||| ||||||||  | |||| ||||||||| |||||    
T  4846555 ttatataaaatatcggttgtaatttacacgcaaaatttctataaattatcgtagataatctatacacg 4846622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 14771197 - 14771136
Alignment:
Q  8 atataaaatatcgtttgcaatttacacgcaaaaattctataatatttcgttgataatctacac 70  Q
    ||||| ||||||||||| ||||||||||| ||| |||||||| || |||||||||||||||||    
T  14771197 atatataatatcgtttgtaatttacacgc-aaatttctataaaatatcgttgataatctacac 14771136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 17037858 - 17037801
Alignment:
Q  13 aaatatcgtttgcaatttacacgcaaaaattctataatatttcgttgataatctacac 70  Q
    |||||| ||||| ||||||||||||||| |||||||| || |||||||||||| ||||    
T  17037858 aaatattgtttgtaatttacacgcaaaatttctataaaatatcgttgataatcaacac 17037801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 86
Target Start/End: Complemental strand, 21585732 - 21585656
Alignment:
Q  10 ataaaatatcgtttgcaatttacacgcaaaaattctataatatttcgttgataatctacacacgctatcgcaataaa 86  Q
    ||||||||||||||| |||||||  |||||  || ||||| || ||| ||||||||||||||||||| || ||||||    
T  21585732 ataaaatatcgtttgtaatttacgtgcaaattttttataaaatatcgctgataatctacacacgctaccgtaataaa 21585656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 67
Target Start/End: Original strand, 17035403 - 17035464
Alignment:
Q  6 ttatataaaatatcgtttgcaatttacacgcaaaaattctataatatttcgttgataatcta 67  Q
    |||||||||||| |||||| |||| ||| |||||| |||||||| || ||||| ||||||||    
T  17035403 ttatataaaatagcgtttgtaattcacatgcaaaatttctataaaatatcgttaataatcta 17035464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 6 - 69
Target Start/End: Complemental strand, 9045091 - 9045028
Alignment:
Q  6 ttatataaaatatcgtttgcaatttacacgcaaaaattctataatatttcgttgataatctaca 69  Q
    ||||||||||||||||||| |||||| | |||||| |||||||| || ||||||||||||||||    
T  9045091 ttatataaaatatcgtttgtaatttaaatgcaaaatttctataaaatatcgttgataatctaca 9045028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 6 - 73
Target Start/End: Complemental strand, 43442363 - 43442296
Alignment:
Q  6 ttatataaaatatcgtttgcaatttacacgcaaaaattctataatatttcgttgataatctacacacg 73  Q
    ||||||||||||||||||| |||||||||| |||| |||||||| |  | ||||||||||||||||||    
T  43442363 ttatataaaatatcgtttgtaatttacacgtaaaatttctataaaacattgttgataatctacacacg 43442296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 69
Target Start/End: Original strand, 41207640 - 41207703
Alignment:
Q  6 ttatataaaatatcgtttgcaatttacacgcaaaaattctataatatttcgttgataatctaca 69  Q
    |||||||||||||| ||||  ||||||||| |||| |||||||| || ||||||||||||||||    
T  41207640 ttatataaaatatcctttgtcatttacacgtaaaatttctataaaatatcgttgataatctaca 41207703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 70
Target Start/End: Complemental strand, 44856796 - 44856733
Alignment:
Q  7 tatataaaatatcgtttgcaatttacacgcaaaaattctataatatttcgttgataatctacac 70  Q
    ||||||||||||||||||||||| ||||||||||| | ||||| || | ||| |||||||||||    
T  44856796 tatataaaatatcgtttgcaattcacacgcaaaaaatttataaaatatagttcataatctacac 44856733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 70
Target Start/End: Original strand, 4552535 - 4552600
Alignment:
Q  6 ttatataaaatatcgtttgcaatttacacgcaaaaattctat-aatatttcgttgataatctacac 70  Q
    ||||||||||||||||||| |||||||||| |||| |||||| ||||| |  ||||||||||||||    
T  4552535 ttatataaaatatcgtttgtaatttacacggaaaatttctataaatatatatttgataatctacac 4552600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 69
Target Start/End: Original strand, 20111161 - 20111223
Alignment:
Q  6 ttatataaaatatcgtttgcaatttacacgcaaaaattctataatatttcgttgataatctaca 69  Q
    ||||||||||||| ||||| |||| |||||||||| |||||||| ||  |||||||||||||||    
T  20111161 ttatataaaatattgtttgtaatt-acacgcaaaatttctataaaataccgttgataatctaca 20111223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 68
Target Start/End: Original strand, 38421128 - 38421190
Alignment:
Q  6 ttatataaaatatcgtttgcaatttacacgcaaaaattctataatatttcgttgataatctac 68  Q
    |||||||||||||| ||||  |||||||| ||||| |||||||| || | |||||||||||||    
T  38421128 ttatataaaatatcatttgtgatttacacacaaaatttctataaaatattgttgataatctac 38421190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 86
Target Start/End: Original strand, 11550120 - 11550201
Alignment:
Q  6 ttatataaaatatcgtttgcaatttacacgcaaaaattct-ataatatttcgttgataatctacacacgctatcgcaataaa 86  Q
    ||||| ||||||| ||||| ||||||||||||||| |||| | || || || |||||||||||||||| ||| | |||||||    
T  11550120 ttatacaaaatattgtttgtaatttacacgcaaaatttctaaaaaaatatctttgataatctacacacactagcccaataaa 11550201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 86
Target Start/End: Original strand, 11538607 - 11538687
Alignment:
Q  6 ttatataaaatatcgtttgcaatttacacgcaaaaattctataatatttcgttgataatctacacacgctatcgcaataaa 86  Q
    ||||||||||||||||||  ||||||||||||||  || ||||  || || |||||||| |||||||| ||  ||||||||    
T  11538607 ttatataaaatatcgtttataatttacacgcaaattttttatataatatctttgataatatacacacgttagtgcaataaa 11538687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 21564248 - 21564197
Alignment:
Q  18 tcgtttgcaatttacacgcaaaaattctataatatttcgttgataatctacac 70  Q
    ||||||| |||||||| |||||| |||||||| || |||||||||||||||||    
T  21564248 tcgtttgtaatttacatgcaaaa-ttctataaaatatcgttgataatctacac 21564197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 69
Target Start/End: Original strand, 11840 - 11903
Alignment:
Q  6 ttatataaaatatcgtttgcaatttacacgcaaaaattctataatatttcgttgataatctaca 69  Q
    |||||||||||||| |||| ||||||||  ||||| |||||||| || ||||||||||||||||    
T  11840 ttatataaaatatcatttgtaatttacagacaaaatttctataaaatatcgttgataatctaca 11903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 8174436 - 8174377
Alignment:
Q  10 ataaaatatcgtttgcaatttacacgcaaaaattctataatatttcgttgataatctaca 69  Q
    |||||||||||||||  ||||||| |||||| |||||||| | |||||||||||||||||    
T  8174436 ataaaatatcgtttgttatttacatgcaaaatttctataaaacttcgttgataatctaca 8174377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 22793187 - 22793127
Alignment:
Q  8 atataaaatatcgtttgcaatttacacgcaaaaattctataatatttcgttgataatctaca 69  Q
    ||||||||||||||||| ||||||||||  ||| |||||||| || ||||||||||||||||    
T  22793187 atataaaatatcgtttgtaatttacacg-taaatttctataaaatatcgttgataatctaca 22793127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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