View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10865A_low_33 (Length: 422)

Name: NF10865A_low_33
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10865A_low_33
NF10865A_low_33
[»] chr3 (21 HSPs)
chr3 (11-237)||(9101182-9101408)
chr3 (11-236)||(9029068-9029294)
chr3 (11-237)||(8746908-8747134)
chr3 (15-237)||(9023404-9023626)
chr3 (11-237)||(9026108-9026334)
chr3 (11-237)||(9034574-9034800)
chr3 (11-186)||(9015428-9015602)
chr3 (43-173)||(9108812-9108942)
chr3 (49-194)||(8957118-8957263)
chr3 (59-195)||(8965272-8965408)
chr3 (59-189)||(8962563-8962693)
chr3 (13-189)||(9019290-9019466)
chr3 (49-191)||(8755581-8755723)
chr3 (53-180)||(9112118-9112245)
chr3 (59-196)||(8988340-8988477)
chr3 (334-380)||(9101045-9101091)
chr3 (377-416)||(9100959-9100998)
chr3 (340-379)||(9025981-9026020)
chr3 (340-379)||(9034446-9034485)
chr3 (340-379)||(9023277-9023316)
chr3 (334-378)||(8746795-8746839)


Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 11 - 237
Target Start/End: Complemental strand, 9101408 - 9101182
Alignment:
Q  11 atgaaatccacaagaaaataagtgcaatcatcatgtttttagtgcttaaagatggcgagcattgacaatacaattgaaactccgatcatagccactgaac 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9101408 atgaaatccacaagaaaataagtgcaatcatcatgtttttagtgcttaaagatggcgagcattgacaatacaattgaaactccgatcatagccactgaac 9101309  T
Q  111 ttgtaacagatccagcagctccaggatcagggcctggtgctggagccaacgagggactgaggttttgggcagaggccacggtggcggcgaagatgatgac 210  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9101308 ttgtaacagaaccagcagctccagcatcagggcctggtgctggagccaacgagggactgaggttttgggcagaggccacggtggcggcgaagatgatgac 9101209  T
Q  211 cataaagaaggggaagaacttcatagc 237  Q
    |||||||||||||||||||||||||||    
T  9101208 cataaagaaggggaagaacttcatagc 9101182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 11 - 236
Target Start/End: Complemental strand, 9029294 - 9029068
Alignment:
Q  11 atgaaatccacaagaaaataagtgcaatc-atcatgtttttagtgcttaaagatggcgagcattgacaatacaattgaaactccgatcatagccactgaa 109  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  9029294 atgaaatccacaagaaaataagtggaatccatcatgtttttagtgcttgaagatggcgagcattgacaacacaattgaaactccgatcatagccgctgaa 9029195  T
Q  110 cttgtaacagatccagcagctccaggatcagggcctggtgctggagccaacgagggactgaggttttgggcagaggccacggtggcggcgaagatgatga 209  Q
    ||||||| ||||||||||||||||| |||||| |||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||    
T  9029194 cttgtaatagatccagcagctccagcatcaggacctggtgctggagccaacgaaggactaaggtcttgggcagaggccacggtggcggcgaagatgatga 9029095  T
Q  210 ccataaagaaggggaagaacttcatag 236  Q
    ||| |||||||| ||||||||||||||    
T  9029094 ccaaaaagaaggagaagaacttcatag 9029068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 11 - 237
Target Start/End: Complemental strand, 8747134 - 8746908
Alignment:
Q  11 atgaaatccacaagaaaataagtgcaatcatcatgtttttagtgcttaaagatggcgagcattgacaatacaattgaaactccgatcatagccactgaac 110  Q
    ||||||||||||||||||| |||| ||||||||| |||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||     
T  8747134 atgaaatccacaagaaaatgagtggaatcatcatttttttagtgcttgaagatggcgagcattgacaacacaattgaaactccaatcatagccactgaat 8747035  T
Q  111 ttgtaacagatccagcagctccaggatcagggcctggtgctggagccaacgagggactgaggttttgggcagaggccacggtggcggcgaagatgatgac 210  Q
    |||||||||||||| ||||||||  |||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||    
T  8747034 ttgtaacagatccaacagctccaacatcaggacctggtgctggagccaacgagggactgaggtcttgggcagaggccagggtggcggcgaagatgaagac 8746935  T
Q  211 cataaagaaggggaagaacttcatagc 237  Q
     | |||||||| |||||||||||||||    
T  8746934 gaaaaagaaggagaagaacttcatagc 8746908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 15 - 237
Target Start/End: Complemental strand, 9023626 - 9023404
Alignment:
Q  15 aatccacaagaaaataagtgcaatcatcatgtttttagtgcttaaagatggcgagcattgacaatacaattgaaactccgatcatagccactgaacttgt 114  Q
    ||||||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||  |||| ||||| ||||||||||||||||||    
T  9023626 aatccacaagaaaatgagtggaatcatcatgtttttagtgcttgaagatggcgagcattgacaatacaaccgaaattccgaccatagccactgaacttgt 9023527  T
Q  115 aacagatccagcagctccaggatcagggcctggtgctggagccaacgagggactgaggttttgggcagaggccacggtggcggcgaagatgatgaccata 214  Q
    |||||||||||||||||||| |||||| |||||||| ||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||| |    
T  9023526 aacagatccagcagctccagcatcaggacctggtgccggagccaacgagggactaaggtcttgggcagaggccactgtggcggcgaagatgatgaccaaa 9023427  T
Q  215 aagaaggggaagaacttcatagc 237  Q
    ||||||| ||||||||| |||||    
T  9023426 aagaaggagaagaactttatagc 9023404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 11 - 237
Target Start/End: Complemental strand, 9026334 - 9026108
Alignment:
Q  11 atgaaatccacaagaaaataagtgcaatcatcatgtttttagtgcttaaagatggcgagcattgacaatacaattgaaactccgatcatagccactgaac 110  Q
    |||||||||||||||||||||||| |||||| |||||||||||| || |||||||||| |||||||||||||| ||||||||||||||| ||||||||||    
T  9026334 atgaaatccacaagaaaataagtggaatcattatgtttttagtgtttgaagatggcgatcattgacaatacaactgaaactccgatcattgccactgaac 9026235  T
Q  111 ttgtaacagatccagcagctccaggatcagggcctggtgctggagccaacgagggactgaggttttgggcagaggccacggtggcggcgaagatgatgac 210  Q
    ||||||||||||||||| |||||| |||||  |||||||||||||||||||| ||||| || | ||||||||||||||||||||||||||||||||||||    
T  9026234 ttgtaacagatccagcaactccagcatcagaacctggtgctggagccaacgaaggactaagatcttgggcagaggccacggtggcggcgaagatgatgac 9026135  T
Q  211 cataaagaaggggaagaacttcatagc 237  Q
    || |||||||| |||||||||||||||    
T  9026134 caaaaagaaggagaagaacttcatagc 9026108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 11 - 237
Target Start/End: Complemental strand, 9034800 - 9034574
Alignment:
Q  11 atgaaatccacaagaaaataagtgcaatcatcatgtttttagtgcttaaagatggcgagcattgacaatacaattgaaactccgatcatagccactgaac 110  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  9034800 atgaagtccacaagaaaataagtgaaatcatcatgtttttagtgcttgaagatggcgagcattgacaacacaattgaaactccgatcatagccaccgaac 9034701  T
Q  111 ttgtaacagatccagcagctccaggatcagggcctggtgctggagccaacgagggactgaggttttgggcagaggccacggtggcggcgaagatgatgac 210  Q
    ||| |||||||||||||||||||| |||||| |||||||| ||||||||||| ||||| |||| |||||||||||||||| |||| |||||||||  |||    
T  9034700 ttgcaacagatccagcagctccagcatcaggacctggtgccggagccaacgaaggactaaggtcttgggcagaggccacgatggcagcgaagatggcgac 9034601  T
Q  211 cataaagaaggggaagaacttcatagc 237  Q
     | |||||||| |||||| || |||||    
T  9034600 gaaaaagaaggagaagaattttatagc 9034574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 11 - 186
Target Start/End: Complemental strand, 9015602 - 9015428
Alignment:
Q  11 atgaaatccacaagaaaataagtgcaatcatcatgtttttagtgcttaaagatggcgagcattgacaatacaattgaaactccgatcatagccactgaac 110  Q
    |||||||||||||||||||||||| |||||| || ||||||||| || ||||||||||||||||||||||||||||||||||| | ||||| |||||||     
T  9015602 atgaaatccacaagaaaataagtggaatcataat-tttttagtgtttgaagatggcgagcattgacaatacaattgaaactccaaccatagtcactgaat 9015504  T
Q  111 ttgtaacagatccagcagctccaggatcagggcctggtgctggagccaacgagggactgaggttttgggcagaggc 186  Q
    |||||||| ||||||| ||||| | |||||| |||||||| |||| ||||||||| ||||||| ||| || |||||    
T  9015503 ttgtaacatatccagctgctccggcatcaggacctggtgccggagacaacgaggggctgaggtcttgagccgaggc 9015428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 43 - 173
Target Start/End: Complemental strand, 9108942 - 9108812
Alignment:
Q  43 atgtttttagtgcttaaagatggcgagcattgacaatacaattgaaactccgatcatagccactgaacttgtaacagatccagcagctccaggatcaggg 142  Q
    ||||||||||| ||| ||||  || ||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||| ||||||||   ||||||     
T  9108942 atgtttttagttcttcaagagtgcaagcattgacaagacaattgaagctccgatcatggccactgaacttgtaacagatccggcagctccgacatcagga 9108843  T
Q  143 cctggtgctggagccaacgagggactgaggt 173  Q
    |||| |||||||||||| |||||||||||||    
T  9108842 cctgatgctggagccaatgagggactgaggt 9108812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 49 - 194
Target Start/End: Complemental strand, 8957263 - 8957118
Alignment:
Q  49 ttagtgcttaaagatggcgagcattgacaatacaattgaaactccgatcatagccactgaacttgtaacagatccagcagctccaggatcagggcctggt 148  Q
    ||||| ||| || ||||||| ||||||||  ||||||||| |||||||||||||||| |||||||||||| |||| ||||||||||  ||||| || |||    
T  8957263 ttagttcttgaaaatggcgaccattgacagcacaattgaagctccgatcatagccacagaacttgtaacaaatccggcagctccagcgtcaggaccgggt 8957164  T
Q  149 gctggagccaacgagggactgaggttttgggcagaggccacggtgg 194  Q
    |||||||| ||||| ||||| |||| |||||| |||||||||||||    
T  8957163 gctggagctaacgacggactaaggtcttgggccgaggccacggtgg 8957118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 59 - 195
Target Start/End: Complemental strand, 8965408 - 8965272
Alignment:
Q  59 aagatggcgagcattgacaatacaattgaaactccgatcatagccactgaacttgtaacagatccagcagctccaggatcagggcctggtgctggagcca 158  Q
    ||||| |||||||||||||  ||||||||| |||||||||| ||||  ||||||||||||||||| ||||||||||  ||||| | ||||||||||||||    
T  8965408 aagattgcgagcattgacagcacaattgaagctccgatcattgccatagaacttgtaacagatccggcagctccagcgtcaggacttggtgctggagcca 8965309  T
Q  159 acgagggactgaggttttgggcagaggccacggtggc 195  Q
    |||| ||||| |||| |||||| |||||||| |||||    
T  8965308 acgacggactaaggtcttgggccgaggccactgtggc 8965272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 59 - 189
Target Start/End: Complemental strand, 8962693 - 8962563
Alignment:
Q  59 aagatggcgagcattgacaatacaattgaaactccgatcatagccactgaacttgtaacagatccagcagctccaggatcagggcctggtgctggagcca 158  Q
    ||||| ||||||||||| |  ||||||||| |||||||||||||||| |||| || ||||||||| ||| |||||| |||||| |||||||||||||| |    
T  8962693 aagatagcgagcattgaaagcacaattgaagctccgatcatagccacagaacctgcaacagatccggcaactccagcatcaggacctggtgctggagcta 8962594  T
Q  159 acgagggactgaggttttgggcagaggccac 189  Q
    |||||||||| |||| |||||| ||||||||    
T  8962593 acgagggactaaggtcttgggccgaggccac 8962563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 13 - 189
Target Start/End: Complemental strand, 9019466 - 9019290
Alignment:
Q  13 gaaatccacaagaaaataagtgcaatcatcatgtttttagtgcttaaagatggcgagcattgacaatacaattgaaactccgatcatagccactgaactt 112  Q
    ||||||||| ||||||| ||||   |||| ||||||| ||| ||| |||||||| ||||||||||| ||||||||| ||||||||||||| ||||||||     
T  9019466 gaaatccaccagaaaattagtgggttcatgatgttttcagttcttcaagatggcaagcattgacaacacaattgaagctccgatcatagcaactgaactc 9019367  T
Q  113 gtaacagatccagcagctccaggatcagggcctggtgctggagccaacgagggactgaggttttgggcagaggccac 189  Q
    ||||||||||||  ||| |||  |||||| |||||||| |||||  | |||||||| |||| ||| || ||||||||    
T  9019366 gtaacagatccacaagccccaacatcaggacctggtgccggagcggatgagggactaaggtcttgagccgaggccac 9019290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 49 - 191
Target Start/End: Complemental strand, 8755723 - 8755581
Alignment:
Q  49 ttagtgcttaaagatggcgagcattgacaatacaattgaaactccgatcatagccactgaacttgtaacagatccagcagctccaggatcagggcctggt 148  Q
    ||||| ||| |||||||||||||| ||||| | ||| ||| |||| |||||||| |||||| ||||||||||||||||||| || | ||||||  |||||    
T  8755723 ttagttcttgaagatggcgagcatagacaaaataatcgaagctccaatcatagcaactgaatttgtaacagatccagcagcaccggcatcaggatctggt 8755624  T
Q  149 gctggagccaacgagggactgaggttttgggcagaggccacgg 191  Q
    || |||||||||||||||||||||| ||| || || |||||||    
T  8755623 gccggagccaacgagggactgaggtcttgagccgaagccacgg 8755581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 53 - 180
Target Start/End: Complemental strand, 9112245 - 9112118
Alignment:
Q  53 tgcttaaagatggcgagcattgacaatacaattgaaactccgatcatagccactgaacttgtaacagatccagcagctccaggatcagggcctggtgctg 152  Q
    ||||||||||| || ||||||||||| |||||  || |||| ||||||||||||| | |||||| ||||||| ||||||| | ||||||  ||||||| |    
T  9112245 tgcttaaagatagcaagcattgacaacacaatcaaagctcccatcatagccactggatttgtaagagatccaacagctccggtatcaggtgctggtgccg 9112146  T
Q  153 gagccaacgagggactgaggttttgggc 180  Q
    ||||||||||||||||||||| ||||||    
T  9112145 gagccaacgagggactgaggtcttgggc 9112118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 59 - 196
Target Start/End: Complemental strand, 8988477 - 8988340
Alignment:
Q  59 aagatggcgagcattgacaatacaattgaaactccgatcatagccactgaacttgtaacagatccagcagctccaggatcagggcctggtgctggagcca 158  Q
    ||||| ||||||||||||| ||| |||||| ||||||||||||||||  |||||||| |||| |  |||||||||   ||||| ||||||||||||| ||    
T  8988477 aagatagcgagcattgacagtacgattgaagctccgatcatagccacataacttgtagcagaactggcagctccaacgtcaggacctggtgctggagaca 8988378  T
Q  159 acgagggactgaggttttgggcagaggccacggtggcg 196  Q
    |||||||||| |||| |||||| ||||| |||| ||||    
T  8988377 acgagggactaaggtcttgggccgaggctacggcggcg 8988340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 334 - 380
Target Start/End: Complemental strand, 9101091 - 9101045
Alignment:
Q  334 gtgggagatatgagaattgagagggtgtgggagtatttataagggag 380  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  9101091 gtgggagatatgagaattgagagggtgtgggagtatttataagggag 9101045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 377 - 416
Target Start/End: Complemental strand, 9100998 - 9100959
Alignment:
Q  377 ggagcttgtgaaaatatattatgaatgatttggtcgttag 416  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  9100998 ggagcttgtgaaaatatattatgaatgatttggtcgttag 9100959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 340 - 379
Target Start/End: Complemental strand, 9026020 - 9025981
Alignment:
Q  340 gatatgagaattgagagggtgtgggagtatttataaggga 379  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  9026020 gatatgagaattgagagggtgtgagagtatttataaggga 9025981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 340 - 379
Target Start/End: Complemental strand, 9034485 - 9034446
Alignment:
Q  340 gatatgagaattgagagggtgtgggagtatttataaggga 379  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  9034485 gatatgagaattgagagggtgtgagagtatttataaggga 9034446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 340 - 379
Target Start/End: Complemental strand, 9023316 - 9023277
Alignment:
Q  340 gatatgagaattgagagggtgtgggagtatttataaggga 379  Q
    |||||||||||||||||||||||  |||||||||||||||    
T  9023316 gatatgagaattgagagggtgtgaaagtatttataaggga 9023277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 378
Target Start/End: Complemental strand, 8746839 - 8746795
Alignment:
Q  334 gtgggagatatgagaattgagagggtgtgggagtatttataaggg 378  Q
    ||||| ||||||||||||||||| || ||| ||||||||||||||    
T  8746839 gtgggtgatatgagaattgagagagtttggaagtatttataaggg 8746795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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