View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10865A_low_331 (Length: 238)
Name: NF10865A_low_331
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865A_low_331 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 22 - 223
Target Start/End: Original strand, 11878836 - 11879037
Alignment:
| Q |
22 |
ctctatctacttatacaaactttgatataaatttgaattctcttaccaaaagatctagattaccaaattgattcttgataaaatctacaaatgatcttat |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11878836 |
ctctatctacttatacaaactttgatataaatttgaattctcttaccaaaagatctagattaccaaattgattcttgataaaatctacaaatgatcttat |
11878935 |
T |
|
| Q |
122 |
acttgcatgatctatgacatcaagttgatgaaaaacaacaagaccaggcagagaaagctgtttcagcttctcaacagcttcaagacctctcttttcatct |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
11878936 |
acttgcatgatctatgacatcaagttgatgaaaaacaacaagaccaggcaaagaaagctgtttcaatttctcaacagcttcaagacctctcttttcatct |
11879035 |
T |
|
| Q |
222 |
ct |
223 |
Q |
| |
|
|| |
|
|
| T |
11879036 |
ct |
11879037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 22 - 223
Target Start/End: Original strand, 11893843 - 11894044
Alignment:
| Q |
22 |
ctctatctacttatacaaactttgatataaatttgaattctcttaccaaaagatctagattaccaaattgattcttgataaaatctacaaatgatcttat |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11893843 |
ctctatctacttatacaaactttgatataaatttgaattctcttaccaaaagatctagattaccaaattgattcttgataaaatctacaaatgatcttat |
11893942 |
T |
|
| Q |
122 |
acttgcatgatctatgacatcaagttgatgaaaaacaacaagaccaggcagagaaagctgtttcagcttctcaacagcttcaagacctctcttttcatct |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
11893943 |
acttgcatgatctatgacatcaagttgatgaaaaacaacaagaccaggcaaagaaagctgtttcaatttctcaacagcttcaagacctctcttttcatct |
11894042 |
T |
|
| Q |
222 |
ct |
223 |
Q |
| |
|
|| |
|
|
| T |
11894043 |
ct |
11894044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 22 - 223
Target Start/End: Original strand, 11896252 - 11896453
Alignment:
| Q |
22 |
ctctatctacttatacaaactttgatataaatttgaattctcttaccaaaagatctagattaccaaattgattcttgataaaatctacaaatgatcttat |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11896252 |
ctctatctacttatacaaactttgatataaatttgaattctcttaccaaaagatctagattaccaaattgattcttgataaaatctacaaatgatcttat |
11896351 |
T |
|
| Q |
122 |
acttgcatgatctatgacatcaagttgatgaaaaacaacaagaccaggcagagaaagctgtttcagcttctcaacagcttcaagacctctcttttcatct |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
11896352 |
acttgcatgatctatgacatcaagttgatgaaaaacaacaagaccaggcaaagaaagctgtttcaatttctcaacagcttcaagacctctcttttcatct |
11896451 |
T |
|
| Q |
222 |
ct |
223 |
Q |
| |
|
|| |
|
|
| T |
11896452 |
ct |
11896453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 48 - 223
Target Start/End: Original strand, 11875253 - 11875428
Alignment:
| Q |
48 |
ataaatttgaattctcttaccaaaagatctagattaccaaattgattcttgataaaatctacaaatgatcttatacttgcatgatctatgacatcaagtt |
147 |
Q |
| |
|
||||||||||| | ||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11875253 |
ataaatttgaactttcttaccaagatatctagtttaccaaattgattcttgataaaatctacaaatgatcttatacttgcatgatctatgacatcaagtt |
11875352 |
T |
|
| Q |
148 |
gatgaaaaacaacaagaccaggcagagaaagctgtttcagcttctcaacagcttcaagacctctcttttcatctct |
223 |
Q |
| |
|
| || ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
11875353 |
gttggaaaacaacaagaccaggcaaagaaagctgtttcaatttctcaacagcttcaagacctctcttttcatctct |
11875428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 63 - 223
Target Start/End: Original strand, 11868804 - 11868964
Alignment:
| Q |
63 |
cttaccaaaagatctagattaccaaattgattcttgataaaatctacaaatgatcttatacttgcatgatctatgacatcaagttgatgaaaaacaacaa |
162 |
Q |
| |
|
|||||||| | |||||| || ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
11868804 |
cttaccaagatatctagttttccaaattgattcttgataaaatctacaaatgatcttatactcgcagcatctatgacatcaagttgatgaaaaacaacaa |
11868903 |
T |
|
| Q |
163 |
gaccaggcagagaaagctgtttcagcttctcaacagcttcaagacctctcttttcatctct |
223 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11868904 |
gaccaggcagagaaagatgtttcagcttctcaacagcttcaagacctctcttttcatctct |
11868964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 56 - 223
Target Start/End: Complemental strand, 25859195 - 25859028
Alignment:
| Q |
56 |
gaattctcttaccaaaagatctagattaccaaattgattcttgataaaatctacaaatgatcttatacttgcatgatctatgacatcaagttgatgaaaa |
155 |
Q |
| |
|
||||| || |||||| | ||| || |||||||||||||| |||| |||||| |||| |||| ||||||| | |||||||||||||||||||||| ||| |
|
|
| T |
25859195 |
gaattatcataccaagatatcaagtttaccaaattgatttttgaggaaatctgcaaaagatccaatacttgtaggatctatgacatcaagttgatggaaa |
25859096 |
T |
|
| Q |
156 |
acaacaagaccaggcagagaaagctgtttcagcttctcaacagcttcaagacctctcttttcatctct |
223 |
Q |
| |
|
|| ||| | ||||| || | ||| | |||| || ||||||||||||||||||||||| |||||||| |
|
|
| T |
25859095 |
accacatggccaggaagtgcaagatccttcaatttatcaacagcttcaagacctctcttctcatctct |
25859028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University