View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10865A_low_335 (Length: 236)
Name: NF10865A_low_335
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865A_low_335 |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 41311250 - 41311027
Alignment:
| Q |
1 |
aatggttctattcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactgtcagagactgctctcc |
100 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41311250 |
aatggttctattcattggctggtttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactgtcagagactgctctcc |
41311151 |
T |
|
| Q |
101 |
cagatggtttttatagtgattactctactagaatttatgatttgatggtatttggcagacttattagtgtatggaatatggagatgcctacacttaagat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41311150 |
cagatggtttttatagtgattactctactagaatttatgatttgatggtatttggcagacttattagtgtatggaatatggagatgcctacacttaagat |
41311051 |
T |
|
| Q |
201 |
atgggtgatgcaagaatacacaat |
224 |
Q |
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||||||||||||||||||| |||| |
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| T |
41311050 |
atgggtgatgcaagaatacgcaat |
41311027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 43164928 - 43164710
Alignment:
| Q |
1 |
aatggttctattcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactgtcagagactgctctcc |
100 |
Q |
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||||||||||||||||||||| ||||| || || |||||||||| |||||||||||||||| |||||||||||||| |||| ||||||||| |||||| | |
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| T |
43164928 |
aatggttctattcattggctggtttataattatgagactgaaatagatgttattattgcctatgatttaaaggaaaagacaatgtcagagattgctcttc |
43164829 |
T |
|
| Q |
101 |
cagatggtttttatagtgattactctactagaatttatgatttgatggtatttggcagacttattagtgtatggaatatggagatgcctacacttaagat |
200 |
Q |
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| T |
43164828 |
cagatgatttttatagtgatttttctcccaacctttatgatttgttggtacttcgcggacttatcagcgtatggaatatggagatgtctacacttaagat |
43164729 |
T |
|
| Q |
201 |
atgggtgatgcaagaatac |
219 |
Q |
| |
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|||||| |||||||||||| |
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| T |
43164728 |
atgggtaatgcaagaatac |
43164710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 4e-34; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 30165677 - 30165883
Alignment:
| Q |
1 |
aatggttctattcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactgtcagagactgctctcc |
100 |
Q |
| |
|
||||||||||||||||||||| ||||| || || ||||||||||||||||||||||||||||||||||||||||| |||| || |||||| ||||| | |
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| T |
30165677 |
aatggttctattcattggctggtttataattatcagactgaaatggatgttattattgcctttgatttaaaggaagcgacaatggcagagatagctcttc |
30165776 |
T |
|
| Q |
101 |
cagatggtttttatagtgattactctactagaatttatgatttgatggtatttggcagacttattagtgtatggaatatggagatgcctacacttaagat |
200 |
Q |
| |
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|| ||| || || | ||| |||||||||||||| |||||||| ||||||| |||||||||||| |||||| | ||||| ||||||| |
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| T |
30165777 |
caaatgattgttctcgtg------------gaatttatgatttgttggtatttcatggacttatcagtgtatggaatgtggagaggtctacagttaagat |
30165864 |
T |
|
| Q |
201 |
atgggtgatgcaagaatac |
219 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
30165865 |
atgggtgatgcaagaatac |
30165883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 6 - 121
Target Start/End: Complemental strand, 28181080 - 28180965
Alignment:
| Q |
6 |
ttctattcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactgtcagagactgctctcccagat |
105 |
Q |
| |
|
|||||||||||||||| ||||| || || |||| |||| | |||||||||||||||||||||||||||||||||| ||||||| | ||||| |||||| |
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| T |
28181080 |
ttctattcattggctggtttataattatgagaccaaaattggtgttattattgcctttgatttaaaggaaatgacaatgtcagatatagctcttccagat |
28180981 |
T |
|
| Q |
106 |
ggtttttatagtgatt |
121 |
Q |
| |
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| ||||||||| |||| |
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| T |
28180980 |
gatttttatagggatt |
28180965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 8 - 224
Target Start/End: Complemental strand, 30125197 - 30124981
Alignment:
| Q |
8 |
ctattcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactgtcagagactgctctcccagatgg |
107 |
Q |
| |
|
|||||||||||||| || || || || |||| | | |||||||||| |||||||||||||||||||| |||| ||||||| | ||||| ||| ||| |
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| T |
30125197 |
ctattcattggctggttcataatcatgagaccaacaaggatgttattgttgcctttgatttaaaggaagcgacaatgtcagaaatagctcttccaaatga |
30125098 |
T |
|
| Q |
108 |
tttttatagtgattactctactagaatttatgatttgatggtatttggcagacttattagtgtatggaatatggagatgcctacacttaagatatgggtg |
207 |
Q |
| |
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|||||||| ||||||||| || | |||||||||| | |||||||| ||||||| ||| |||||| | | |||||| | || |||||||| ||||| |
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| T |
30125097 |
tttttataccgattactctcctgtagattatgatttgttagtatttggtggacttatcagtttatggattcttgagatggatgcagttaagatacgggtg |
30124998 |
T |
|
| Q |
208 |
atgcaagaatacacaat |
224 |
Q |
| |
|
||||| |||||| |||| |
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| T |
30124997 |
atgcatgaatacgcaat |
30124981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 91
Target Start/End: Complemental strand, 30131151 - 30131068
Alignment:
| Q |
8 |
ctattcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactgtcagaga |
91 |
Q |
| |
|
|||||||||||||| ||||| || || |||| || |||||||||||| |||||| ||||||||||||||||| ||||||||| |
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| T |
30131151 |
ctattcattggctggtttataattatgagacaagaagggatgttattatagcctttaatttaaaggaaatgacaatgtcagaga |
30131068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 91
Target Start/End: Complemental strand, 30120112 - 30120068
Alignment:
| Q |
47 |
atgttattattgcctttgatttaaaggaaatgacactgtcagaga |
91 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| | ||||||| |
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| T |
30120112 |
atgttattattgcctttgatttaaaggaaacgacaatatcagaga |
30120068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 222
Target Start/End: Complemental strand, 30130967 - 30130934
Alignment:
| Q |
189 |
tacacttaagatatgggtgatgcaagaatacaca |
222 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |
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|
| T |
30130967 |
tacagttaagatatgggtgatgcaagaatacaca |
30130934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 106
Target Start/End: Original strand, 21426642 - 21426703
Alignment:
| Q |
45 |
ggatgttattattgcctttgatttaaaggaaatgacactgtcagagactgctctcccagatg |
106 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||| ||||||||| ||||| ||||||| |
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|
| T |
21426642 |
ggatgttattattgcccttgatttaaaggaaacaacaatgtcagagatagctcttccagatg |
21426703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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