View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10865A_low_336 (Length: 236)
Name: NF10865A_low_336
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865A_low_336 |
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Alignment Details
Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 17 - 210
Target Start/End: Complemental strand, 2442889 - 2442696
Alignment:
| Q |
17 |
aatatttgtatatgagtttgttaaccttgtttttgtttcaagttcatctcactgacactgtttaccagaaattgatcgagggctcctctatattaccatt |
116 |
Q |
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| T |
2442889 |
aatatttgtatatgagtttgttaaccttgtttttgtttcaagttcatcacactaacactgtttaccagaaattgatcgagggcttctttatattaccatt |
2442790 |
T |
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| Q |
117 |
ttacaatgcaattctagaaattttgtatcattctatcgcatgcagagcaagatagtctgaaaatggttgcaaatagagaagctagagttcggtc |
210 |
Q |
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| T |
2442789 |
ttacaatcaatttatacaaattttgtatcattctatcgcacgcagagcaagatagtctgaaaatggttgcaaaaagagaagctagagttcggtc |
2442696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 41 - 173
Target Start/End: Original strand, 50984196 - 50984328
Alignment:
| Q |
41 |
ccttgtttttgtttcaagttcatctcactgacactgt--ttaccagaaattgatcgagggctcctctatattaccattttacaatgcaattctagaaatt |
138 |
Q |
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| T |
50984196 |
ccttgattttgtttcaacttcatctcactgaaactgtgttttctagaaattgattgagggcttctctatattaccatttt-caat-caattctacaaatt |
50984293 |
T |
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| Q |
139 |
ttgtatcattctatcgcatgcagagcaagatagtc |
173 |
Q |
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| T |
50984294 |
ttgttttaatctgtcacatgcagagcaagatagtc |
50984328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 34019916 - 34019952
Alignment:
| Q |
161 |
gagcaagatagtctgaaaatggttgcaaatagagaag |
197 |
Q |
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| T |
34019916 |
gagcaagatagtctgaaaatggttgcaaaaagagaag |
34019952 |
T |
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