View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10865A_low_338 (Length: 236)
Name: NF10865A_low_338
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865A_low_338 |
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Alignment Details
Target: chr1 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 34468153 - 34468395
Alignment:
| Q |
1 |
aatatataggctgcattattatgatagctgctattgaagttgattttcctttt-------cggctgtactctttctcatagtcgtagtcacattgtggta |
93 |
Q |
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| T |
34468153 |
aatatataggctgcattattatgatagctgctattgaagttgcttttcattttgattcttcggctgtactctttctcatagtcgtagtcacattgtggta |
34468252 |
T |
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| Q |
94 |
ccgaaaactagtgtattgaaggaaacgggtgcagtgcggtctaagattcccatttgtttggttggtgt-----agctttgtgatgctgaaagattataag |
188 |
Q |
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||||||||||||| ||||||||||| || |||||||||||| |||||||||||||| ||||||||| | ||||||||||||||||||||||||||| |
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| T |
34468253 |
ccgaaaactagtggattgaaggaaaaggttgcagtgcggtcgaagattcccatttgattggttggtatggtatagctttgtgatgctgaaagattataag |
34468352 |
T |
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| Q |
189 |
cttgcatttcagttctttagggttaactctgacaaacagcttg |
231 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||| |
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| T |
34468353 |
cttgcatttcagttctttagggttaactctgacaaaaagcttg |
34468395 |
T |
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