View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10865A_low_344 (Length: 233)
Name: NF10865A_low_344
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865A_low_344 |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 30182359 - 30182583
Alignment:
| Q |
1 |
tatgactcctaatatgaacaccagatatagcactgatgacaacatcaacttttttgatagcatcaacaagactcttatgatctgaaaaagatgcctcaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30182359 |
tatgactcctaatatgaacaccagatatagcactgatgacaacatcaacttttttgatagcatcaacaagactcttatgatctgaaaaagatgcctcaac |
30182458 |
T |
|
| Q |
101 |
aatatgagcaccttgtttcttgaatgatagaagtctttgaagcttctcaatttgaagtcccaattctggcctttgaatcacataggtttcatgtccttgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
30182459 |
aatatgagcaccttgtttcttgaatgatagaagtctttgaagcttctcaatttgaagtcccaactctggcctttgaatcacataggtttcatgtccttgt |
30182558 |
T |
|
| Q |
201 |
tctaaacttgccttcactattcttc |
225 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
30182559 |
tctaaacttgccttcactattcttc |
30182583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 99 - 223
Target Start/End: Original strand, 11310995 - 11311119
Alignment:
| Q |
99 |
acaatatgagcaccttgtttcttgaatgatagaagtctttgaagcttctcaatttgaagtcccaattctggcctttgaatcacataggtttcatgtcctt |
198 |
Q |
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|||| |||||||||| ||||||||||||| ||||| |||| | |||||| ||| ||| || | ||||| | ||||| |||||||||||||| |||| |
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| T |
11310995 |
acaagatgagcacctagtttcttgaatgaaagaagcatttgcactttctcagtttcaagccctatatctggacgttgaagtacataggtttcatgacctt |
11311094 |
T |
|
| Q |
199 |
gttctaaacttgccttcactattct |
223 |
Q |
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| T |
11311095 |
gttctaaacttgccttcactattct |
11311119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 99 - 223
Target Start/End: Original strand, 11345668 - 11345792
Alignment:
| Q |
99 |
acaatatgagcaccttgtttcttgaatgatagaagtctttgaagcttctcaatttgaagtcccaattctggcctttgaatcacataggtttcatgtcctt |
198 |
Q |
| |
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|||| |||||||||| ||||||| |||| ||||| |||| | ||||||| ||| ||| || | ||| | | ||||| |||||||||||||| |||| |
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| T |
11345668 |
acaagatgagcacctagtttcttatatgaaagaagcatttgcaccttctcagtttcaagccctatatctagacgttgaagtacataggtttcatgacctt |
11345767 |
T |
|
| Q |
199 |
gttctaaacttgccttcactattct |
223 |
Q |
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||||||||||||||||||||||||| |
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| T |
11345768 |
gttctaaacttgccttcactattct |
11345792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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