View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10865A_low_345 (Length: 232)
Name: NF10865A_low_345
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865A_low_345 |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 25884193 - 25883971
Alignment:
| Q |
1 |
atgctcaaacaggatcgtttatttttaaagtaagaacaaagataaaattcatagtttttatgatataacaaattgattttcattataaatgaattgtaag |
100 |
Q |
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| T |
25884193 |
atgctcaaacaggatcgtttatttttaaagtaagaacaaagctaaaattcatagtttttatgatataacaaattgattttcattataaatgaattgtcag |
25884094 |
T |
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| Q |
101 |
ttttaaatttctaatacaaataacaaccgattctctatctttttgcaggaatgtatcatgggagctctgaaagataagacggttttacttgtaacacacc |
200 |
Q |
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| T |
25884093 |
ttttaaatttctaatacaaataacaaccgattctctatctttttgcaggaatgtatcatgggagctctgaaagataagacggttttacttgtaacacacc |
25883994 |
T |
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| Q |
201 |
aagttgatttcttgcatattgtt |
223 |
Q |
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|||||||||||||||||| |||| |
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| T |
25883993 |
aagttgatttcttgcataatgtt |
25883971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 129 - 223
Target Start/End: Complemental strand, 14302380 - 14302285
Alignment:
| Q |
129 |
gattctctatcttt-ttgcaggaatgtatcatgggagctctgaaagataagacggttttacttgtaacacaccaagttgatttcttgcatattgtt |
223 |
Q |
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| T |
14302380 |
gattctctatttttgttgcaggaatgtatcatgggaactctcaaagataaggcagttttacttgtaacacaccaagttgatttcttgcataatgtt |
14302285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 137 - 223
Target Start/End: Complemental strand, 14318798 - 14318712
Alignment:
| Q |
137 |
atctttttgcaggaatgtatcatgggagctctgaaagataagacggttttacttgtaacacaccaagttgatttcttgcatattgtt |
223 |
Q |
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| T |
14318798 |
atcttgttacaggaatgtatcatgggagctctcaaagataagactgttttacttgtaacccaccaagttgatttcttgcataatgtt |
14318712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 129 - 218
Target Start/End: Complemental strand, 14280983 - 14280893
Alignment:
| Q |
129 |
gattctctatcttt-ttgcaggaatgtatcatgggagctctgaaagataagacggttttacttgtaacacaccaagttgatttcttgcata |
218 |
Q |
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| T |
14280983 |
gattctctatttttgttgcaggaatgtatcatgggaactcttaaagataaaactgttttacttgtaacacatcaagttgatttcttgcata |
14280893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 14302564 - 14302524
Alignment:
| Q |
1 |
atgctcaaacaggatcgtttatttttaaagtaagaacaaag |
41 |
Q |
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| T |
14302564 |
atgctcaaacaggatcatttatttttaaggtaagcacaaag |
14302524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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