View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10865A_low_349 (Length: 230)
Name: NF10865A_low_349
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865A_low_349 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 42297321 - 42297095
Alignment:
| Q |
1 |
aaaatctggttgataacttaacgtgtagattttaaaataaattgaagaggccgtaccttt-aagtaagttggttagcttcaaattctgaatcatgtgaat |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42297321 |
aaaatctggttgataacttaacgtgtagattttaaaataaattgaagaggtcgtaccttttaagtaagttggttagcttcaaattctgaatcatgtgaat |
42297222 |
T |
|
| Q |
100 |
nnnnnnnnnnnnnngtgattggtaaaagacaata-----tatatttcgtgtcttcttaaaaatcgttgcatctttctcaaaaagacgaatggatttaagg |
194 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
42297221 |
aaaaaaaaaaa---gtgattggtaaaagacaatacagtatatatttcgtgtcttcttaaaaatcattgcatctttctcaaacagacgaatggatttaagg |
42297125 |
T |
|
| Q |
195 |
tatgtttgatgtgcatatataataacattt |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
42297124 |
tatgtttgatgtgcatatataataacattt |
42297095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University