View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10865A_low_351 (Length: 230)
Name: NF10865A_low_351
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865A_low_351 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 112; Significance: 9e-57; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 15465944 - 15466167
Alignment:
| Q |
1 |
caaaatgtatataggagagaaaaatcacata----cctgttggccatatcaagtgttgctataagactgacctgtagcatttagtgtccgagttccctga |
96 |
Q |
| |
|
|||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||| ||||||| |||||||| ||||||||||| |
|
|
| T |
15465944 |
caaaatatatataggagagaaaaatcaaatatgtacctgttggccatatcaagtgttgctataagagtgatttgtagcacttagtgtctgagttccctga |
15466043 |
T |
|
| Q |
97 |
gaagtagagtttttctcaggaggagcatccgaatagctcattcctttctggtttgagactgggtttttcttagtatccttagttttcgtatttgtcggcg |
196 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||||| || | ||||||||||||| | |||| ||||||||||||||||| || ||||||| ||||| |
|
|
| T |
15466044 |
gaagtagggtttttctcaggaggaggatccgaatagctaatacttttctggtttgaggattggttcttcttagtatccttagtctttgtatttgccggcg |
15466143 |
T |
|
| Q |
197 |
gagaacccgaatagcccatacgtat |
221 |
Q |
| |
|
||| | ||||||||| |||| |||| |
|
|
| T |
15466144 |
gagga-ccgaatagctcatatgtat |
15466167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 66
Target Start/End: Complemental strand, 18472188 - 18472151
Alignment:
| Q |
29 |
atacctgttggccatatcaagtgttgctataagactga |
66 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
18472188 |
atacctcttggccatatcaagtgttgctataagactga |
18472151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 66
Target Start/End: Complemental strand, 18477814 - 18477777
Alignment:
| Q |
29 |
atacctgttggccatatcaagtgttgctataagactga |
66 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
18477814 |
atacctcttggccatatcaagtgttgctataagactga |
18477777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 189
Target Start/End: Original strand, 15459669 - 15459719
Alignment:
| Q |
139 |
cctttctggtttgagactgggtttttcttagtatccttagttttcgtattt |
189 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||||| | ||||||||| |
|
|
| T |
15459669 |
cctttctggtttgagagtgggtttttcttaggatccttcggcttcgtattt |
15459719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University