View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10865A_low_357 (Length: 230)
Name: NF10865A_low_357
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865A_low_357 |
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Alignment Details
Target: chr4 (Bit Score: 111; Significance: 4e-56; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 17 - 194
Target Start/End: Complemental strand, 2520550 - 2520374
Alignment:
| Q |
17 |
tatcatggtgcttaaaaatacataacaaacttctttnnnnnnnttgtcagagttgaaaaatgagcggtatgaagagggtactcgaggacgcggggg-tga |
115 |
Q |
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| T |
2520550 |
tatcatagtgcttaaaaatacataacaaacttctttaaaaaaattat--gagttgaaaaatgagcggtatgaagagggtactcgaggatgtggggggtga |
2520453 |
T |
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| Q |
116 |
aaatttcacattttatcgaccattgctttcgttaaagagccacaatgggcctaaattatcacccataataataagaaag |
194 |
Q |
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| T |
2520452 |
aaacttcacattttatcgaccattgctttagttaaagagacacaatgggcctaaattatcacccataataataagaaag |
2520374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 191
Target Start/End: Complemental strand, 2528789 - 2528736
Alignment:
| Q |
138 |
ttgctttcgttaaagagccacaatgggcctaaattatcacccataataataaga |
191 |
Q |
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| T |
2528789 |
ttgctttggttaaagggccactatgggcctaaattattaaccataataataaga |
2528736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 191
Target Start/End: Complemental strand, 2536950 - 2536905
Alignment:
| Q |
146 |
gttaaagagccacaatgggcctaaattatcacccataataataaga |
191 |
Q |
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| T |
2536950 |
gttaaagggccactatgggcctaaattataacccatgataataaga |
2536905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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