View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10865A_low_364 (Length: 230)
Name: NF10865A_low_364
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865A_low_364 |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 12287408 - 12287634
Alignment:
| Q |
1 |
agcttattatgtattcacacaacttattacataacacctcaattccatcaaaacaagattgaagaacatagcaatatacattcattcttaaagtactaac |
100 |
Q |
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| T |
12287408 |
agcttattatatattcacacaacttattacataacacctcaattccatcaaaacaagattgaagaacatagcaatatacaatcattcttaaagtactaac |
12287507 |
T |
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| Q |
101 |
acacatttgtgcacaacactattaaattctatacgatgggtgtagcctcacatacattagaaataacggttatatccggggaaaatattcatgtaactga |
200 |
Q |
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| T |
12287508 |
acacatttgtgcacaacactattaaattctatacgatgggtgtagcctcacatacattagaaataacggttatatccggggaaaatattcatgtaattga |
12287607 |
T |
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| Q |
201 |
ggatgcatatgttgttgttcgaggtga |
227 |
Q |
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| T |
12287608 |
ggatgcatatgttgttgttcgaggtga |
12287634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 3 - 227
Target Start/End: Original strand, 12282553 - 12282781
Alignment:
| Q |
3 |
cttattatgtattcacacaacttattacataacacctcaattccatcaaaacaagattgaagaacatagcaatatacattcattcttaaagta-ctaaca |
101 |
Q |
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| T |
12282553 |
cttattatatattcacacaacttataacataacacctcaattcactcacaataaacttgaaggacataacaatatccattcattcttacaccagctaaca |
12282652 |
T |
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| Q |
102 |
caca--tttgtgcacaac-actattaaattctatacgatgggtgtagcctcacatacattagaaataacggttatatccggggaaaatattcatgtaact |
198 |
Q |
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| T |
12282653 |
ggaagttttattcacaactaacattaaattctctactatgggtgtagcctcacgcacattagaaatcacggttatatccggcgaaaatattcatgtaacc |
12282752 |
T |
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| Q |
199 |
gaggatgcatatgttgttgttcgaggtga |
227 |
Q |
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| T |
12282753 |
gaagatgcatacgttgtcgttcgaggtga |
12282781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 12266825 - 12267055
Alignment:
| Q |
1 |
agcttattatgtattcacacaacttattacataacacctcaattccatcaaaacaagattgaagaacatagcaatatacattcattcttaaagta-ctaa |
99 |
Q |
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| T |
12266825 |
agcttattatatatttacacaacttataacataacacctcaattcactcacaataaacttgaaggacataacaatatccattcattcttacaccagctaa |
12266924 |
T |
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| Q |
100 |
cacaca--tttgtgcacaac-actattaaattctatacgatgggtgtagcctcacatacattagaaataacggttatatccggggaaaatattcatgtaa |
196 |
Q |
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| T |
12266925 |
caggaagttttattcacaactaacattaaattctctactatgggtgtagcctcacgcacattagaaatcacggttatatccggcgaaaatattcatgtaa |
12267024 |
T |
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| Q |
197 |
ctgaggatgcatatgttgttgttcgaggtga |
227 |
Q |
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| T |
12267025 |
ccgaagatgcatacgttgtcgttcgaggtga |
12267055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 148 - 227
Target Start/End: Original strand, 12256885 - 12256964
Alignment:
| Q |
148 |
tcacatacattagaaataacggttatatccggggaaaatattcatgtaactgaggatgcatatgttgttgttcgaggtga |
227 |
Q |
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| T |
12256885 |
tcacaaacattagaaattacggttatatctggtgaaaatattcatgtaacggaggatgcatacgttgttgttcgaggtga |
12256964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 148 - 227
Target Start/End: Original strand, 12264277 - 12264356
Alignment:
| Q |
148 |
tcacatacattagaaataacggttatatccggggaaaatattcatgtaactgaggatgcatatgttgttgttcgaggtga |
227 |
Q |
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| T |
12264277 |
tcacaaacattagaaattacggttatatctggtgaaaatattcatgtaacggaggatgcatacgttgttgttcgaggtga |
12264356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 148 - 227
Target Start/End: Original strand, 12270889 - 12270968
Alignment:
| Q |
148 |
tcacatacattagaaataacggttatatccggggaaaatattcatgtaactgaggatgcatatgttgttgttcgaggtga |
227 |
Q |
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| T |
12270889 |
tcacaaacattagaaattacgattatatctggagaaaatattcatgtaacagaggatgcatacgttgttgttcgaggtga |
12270968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 73 - 227
Target Start/End: Original strand, 29197535 - 29197690
Alignment:
| Q |
73 |
aatatacattcattctt-aaagtactaacacacatttgtgcacaacactattaaattctatacgatgggtgtagcctcacatacattagaaataacggtt |
171 |
Q |
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|||||| |||||||||| ||||||| ||||| |||||||||||| || ||||| | ||| |||||| |||| |||| |||||||||||||| ||| |
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| T |
29197535 |
aatatatattcattctttaaagtacacacacattcttgtgcacaacaacatcaaattttctactatgggtatagcttcacgcacattagaaataacagtt |
29197634 |
T |
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| Q |
172 |
atatccggggaaaatattcatgtaactgaggatgcatatgttgttgttcgaggtga |
227 |
Q |
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| T |
29197635 |
ataaccggtgaaaatattcatataactgaggatgcatacgttgtcgttcgaggtga |
29197690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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