View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10865A_low_365 (Length: 230)
Name: NF10865A_low_365
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865A_low_365 |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 2923927 - 2923704
Alignment:
| Q |
1 |
gtacattgtcatatagtttgtctcatttgatgtgtccttttgctcttttcgtataggtttgataaaaggataacagcttttgccgaagacaagtttcaaa |
100 |
Q |
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| T |
2923927 |
gtacattgtcatatagtttgtctcatttgatgtgtccttttgctcttttcgtataggtttgataaaaggataacagcttttgccgaagacaagtttcaaa |
2923828 |
T |
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| Q |
101 |
gagatgggattgatgtgaaaacaggatccatggttgtgaaggtagatgggaaagaaatttccactaaagagctgaaaaatggaggaaagattactacaat |
200 |
Q |
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| T |
2923827 |
gagatgggattgatgtgaaaacaggatccatggttgtgaaggtagatgggaaagaaatttccactaaagagctgaaaaatggaggaaagattactacaat |
2923728 |
T |
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| Q |
201 |
tccatatggaatggctgtctggtc |
224 |
Q |
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| T |
2923727 |
tccatatggaatggctgtctggtc |
2923704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 54 - 224
Target Start/End: Original strand, 36127139 - 36127309
Alignment:
| Q |
54 |
taggtttgataaaaggataacagcttttgccgaagacaagtttcaaagagatgggattgatgtgaaaacaggatccatggttgtgaaggtagatgggaaa |
153 |
Q |
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| T |
36127139 |
taggtttgacaaaagaataacaacctttgctgaagacaagttcaaaagagatggtattgatgtgaaaacaggatccatggttacaaaggtatctgacaga |
36127238 |
T |
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| Q |
154 |
gaaatttccactaaagagctgaaaaatggaggaaagattactacaattccatatggaatggctgtctggtc |
224 |
Q |
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| T |
36127239 |
gaaattaccactaaagaaatgaaaaatggaggagaaattactactattccatatggaatggctgtctggtc |
36127309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 137
Target Start/End: Complemental strand, 16009956 - 16009871
Alignment:
| Q |
52 |
tataggtttgataaaaggataacagcttttgccgaagacaagtttcaaagagatgggattgatgtgaaaacaggatccatggttgt |
137 |
Q |
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| T |
16009956 |
tataggtttgacaagagaataacagaatttgctgaagaaaagttcaaaagagatggaattgatgtgaaattgggatcaatggttgt |
16009871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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