View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10865A_low_372 (Length: 229)
Name: NF10865A_low_372
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865A_low_372 |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 34988869 - 34989091
Alignment:
| Q |
1 |
acttgatcacaacaatgacaactacctaattgtcccatgaaaaatagatcttgtgctgcctaaacagtttagtgtttgacctgcaaagcaagggtctgct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
34988869 |
acttgatcacaacaatgacaactacctaattgtcccatgaaaaatagatcttgtgctgcctaaacagttcagtgtttgacctgcaaagcaagggtctgct |
34988968 |
T |
|
| Q |
101 |
accatttttcgaaatttaatagatagtactaaaaagaaaagaaaattcacagaataaaggttgaatgggctttgatcaatttatacctctcaaggttatc |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34988969 |
accatttttcgaaatttactagatagtactaaaaagaaaagaaaattcacagaataaaggttgaatgggctttgatcaatttatacctctcaaggttatc |
34989068 |
T |
|
| Q |
201 |
agttggaacttaaagaatgttca |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
34989069 |
agttggaacttaaagaatgttca |
34989091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 3 - 135
Target Start/End: Complemental strand, 35561849 - 35561717
Alignment:
| Q |
3 |
ttgatcacaacaatgacaactacctaattgtcccatgaaaaatagatcttgtgctgcctaaacagtttagtgtttgacctgcaaagcaagggtctgctac |
102 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| | || |||| |||||||||||||||||||||| ||| |
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| T |
35561849 |
ttgatcacaacaatggcaactacctaattgtcccatgaaaaatagatcttgtgctgcataaataattcagtgattgacctgcaaagcaagggtctcttac |
35561750 |
T |
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| Q |
103 |
catttttcgaaatttaatagatagtactaaaaa |
135 |
Q |
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| T |
35561749 |
catttttggaaatttactagatactaccaaaaa |
35561717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 3 - 136
Target Start/End: Complemental strand, 35537957 - 35537824
Alignment:
| Q |
3 |
ttgatcacaacaatgacaactacctaattgtcccatgaaaaatagatcttgtgctgcctaaacagtttagtgtttgacctgcaaagcaagggtctgctac |
102 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| | || | || |||||||||||||||||||||| ||| |
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| T |
35537957 |
ttgatcacaacaatggcaactacctaattgtcccatgaaaaatagatcttgttctgcctaaatacttcaatgattgacctgcaaagcaagggtctcatac |
35537858 |
T |
|
| Q |
103 |
catttttcgaaatttaatagatagtactaaaaag |
136 |
Q |
| |
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|||||| ||||||||| |||||| ||| |||||| |
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| T |
35537857 |
cattttccgaaatttactagatactacgaaaaag |
35537824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 3 - 136
Target Start/End: Complemental strand, 35543994 - 35543861
Alignment:
| Q |
3 |
ttgatcacaacaatgacaactacctaattgtcccatgaaaaatagatcttgtgctgcctaaacagtttagtgtttgacctgcaaagcaagggtctgctac |
102 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| | || | || |||| ||||||||||||||||| ||| |
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| T |
35543994 |
ttgatcacaacaatggcaactacctaattgtcccatgaaaaatagatcttgttctgcctaaatacttcaatgattgatctgcaaagcaagggtctcatac |
35543895 |
T |
|
| Q |
103 |
catttttcgaaatttaatagatagtactaaaaag |
136 |
Q |
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||||||| ||||||||||||||| ||| |||||| |
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| T |
35543894 |
catttttggaaatttaatagatactacgaaaaag |
35543861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 3 - 118
Target Start/End: Complemental strand, 35530728 - 35530613
Alignment:
| Q |
3 |
ttgatcacaacaatgacaactacctaattgtcccatgaaaaatagatcttgtgctgcctaaacagtttagtgtttgacctgcaaagcaagggtctgctac |
102 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| | || |||| ||||||||||| |||||||||| ||| |
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| T |
35530728 |
ttgatcacaacaatggcaactacctaattgtcccatgaaaaatagatcttgtgctgcataaataattcagtgattgacctgcaatgcaagggtctcttac |
35530629 |
T |
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| Q |
103 |
catttttcgaaattta |
118 |
Q |
| |
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||| ||| |||||||| |
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| T |
35530628 |
catgtttagaaattta |
35530613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 16 - 124
Target Start/End: Original strand, 36300521 - 36300629
Alignment:
| Q |
16 |
tgacaactacctaattgtcccatgaaaaatagatcttgtgctgcctaaacagtttagtgtttgacctgcaaagcaagggtctgctaccatttttcgaaat |
115 |
Q |
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|||||| ||||||||||| ||||||||| ||||| || |||||| ||||||||| ||||||||||||||||||||||||||| | ||||||| ||||| |
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| T |
36300521 |
tgacaagtacctaattgttccatgaaaattagattttatgctgcttaaacagttcagtgtttgacctgcaaagcaagggtctctaatcatttttggaaat |
36300620 |
T |
|
| Q |
116 |
ttaatagat |
124 |
Q |
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||||||||| |
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| T |
36300621 |
ttaatagat |
36300629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 93
Target Start/End: Original strand, 51006790 - 51006842
Alignment:
| Q |
41 |
aaaatagatcttgtgctgcctaaacagtttagtgtttgacctgcaaagcaagg |
93 |
Q |
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||||||||| ||| ||||| |||||||||||||||||||| ||||||| |||| |
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| T |
51006790 |
aaaatagattttgagctgcttaaacagtttagtgtttgacatgcaaagaaagg |
51006842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 193
Target Start/End: Original strand, 51006904 - 51006952
Alignment:
| Q |
146 |
ttcacagaataaaggttgaat-gggctttgatcaatttatacctctcaa |
193 |
Q |
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|||||||||| |||||||||| ||| |||||||||||||| |||||||| |
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| T |
51006904 |
ttcacagaatgaaggttgaatggggatttgatcaatttattcctctcaa |
51006952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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