View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10865A_low_375 (Length: 229)

Name: NF10865A_low_375
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10865A_low_375
NF10865A_low_375
[»] scaffold0045 (2 HSPs)
scaffold0045 (1-110)||(26175-26282)
scaffold0045 (178-225)||(26350-26397)
[»] chr5 (25 HSPs)
chr5 (178-225)||(25814392-25814439)
chr5 (178-225)||(7613735-7613782)
chr5 (182-220)||(33988232-33988270)
chr5 (180-220)||(42575676-42575716)
chr5 (183-225)||(8369729-8369771)
chr5 (183-225)||(20189925-20189967)
chr5 (182-220)||(35334564-35334602)
chr5 (184-225)||(6610871-6610912)
chr5 (184-225)||(13135787-13135828)
chr5 (184-225)||(35646122-35646163)
chr5 (180-217)||(39008158-39008195)
chr5 (183-220)||(39183665-39183702)
chr5 (182-225)||(11099510-11099553)
chr5 (180-215)||(25111191-25111226)
chr5 (180-215)||(25170282-25170317)
chr5 (183-217)||(16283628-16283662)
chr5 (183-217)||(17242995-17243029)
chr5 (183-225)||(24231043-24231085)
chr5 (182-215)||(4044520-4044553)
chr5 (184-225)||(6735390-6735431)
chr5 (178-215)||(16954893-16954930)
chr5 (180-225)||(22582905-22582949)
chr5 (183-220)||(42211366-42211403)
chr5 (183-215)||(19889576-19889608)
chr5 (183-215)||(25344781-25344813)
[»] chr4 (31 HSPs)
chr4 (178-225)||(39979808-39979855)
chr4 (178-225)||(44020794-44020841)
chr4 (182-225)||(49812261-49812304)
chr4 (179-225)||(9093794-9093840)
chr4 (184-225)||(48740554-48740595)
chr4 (180-215)||(25149481-25149516)
chr4 (178-225)||(51527446-51527493)
chr4 (178-216)||(38977019-38977057)
chr4 (182-220)||(41710181-41710219)
chr4 (180-217)||(1796282-1796319)
chr4 (180-225)||(18849791-18849836)
chr4 (183-220)||(42544242-42544279)
chr4 (180-217)||(51572268-51572305)
chr4 (183-220)||(54729521-54729558)
chr4 (180-220)||(33047522-33047562)
chr4 (180-220)||(42024238-42024278)
chr4 (178-213)||(1825292-1825327)
chr4 (183-225)||(4360440-4360482)
chr4 (183-217)||(17237076-17237110)
chr4 (183-225)||(22872420-22872462)
chr4 (183-225)||(27977180-27977222)
chr4 (183-217)||(29644388-29644422)
chr4 (182-215)||(29550769-29550802)
chr4 (180-225)||(43421330-43421375)
chr4 (178-211)||(49401684-49401717)
chr4 (183-215)||(3505755-3505787)
chr4 (183-215)||(32949891-32949923)
chr4 (183-215)||(39052943-39052975)
chr4 (183-215)||(48400673-48400705)
chr4 (184-216)||(49306621-49306653)
chr4 (183-219)||(50328109-50328145)
[»] chr7 (30 HSPs)
chr7 (178-224)||(48981684-48981730)
chr7 (178-220)||(49100539-49100581)
chr7 (178-225)||(21387512-21387559)
chr7 (180-225)||(7425910-7425955)
chr7 (178-225)||(5724739-5724786)
chr7 (178-225)||(18235218-18235265)
chr7 (182-220)||(29257579-29257617)
chr7 (183-225)||(37490650-37490692)
chr7 (180-220)||(2846713-2846753)
chr7 (178-225)||(36117689-36117737)
chr7 (180-215)||(18731469-18731504)
chr7 (178-225)||(23703944-23703991)
chr7 (178-225)||(30463044-30463091)
chr7 (178-225)||(31581475-31581522)
chr7 (183-222)||(34001894-34001933)
chr7 (178-225)||(47454032-47454079)
chr7 (178-220)||(37157198-37157240)
chr7 (184-225)||(2842084-2842125)
chr7 (182-215)||(28333203-28333236)
chr7 (183-220)||(29434617-29434654)
chr7 (182-215)||(32776015-32776048)
chr7 (180-225)||(38181906-38181951)
chr7 (182-215)||(38589766-38589799)
chr7 (182-215)||(45218200-45218233)
chr7 (183-215)||(2849288-2849320)
chr7 (183-215)||(3667919-3667951)
chr7 (184-220)||(7456621-7456657)
chr7 (183-215)||(24288456-24288488)
chr7 (183-215)||(34064248-34064280)
chr7 (183-215)||(37496439-37496471)
[»] chr6 (8 HSPs)
chr6 (180-225)||(31265809-31265854)
chr6 (178-225)||(15081451-15081498)
chr6 (178-225)||(7301112-7301159)
chr6 (178-225)||(9755179-9755226)
chr6 (182-220)||(30063986-30064024)
chr6 (182-215)||(33017986-33018019)
chr6 (182-215)||(33921511-33921544)
chr6 (184-225)||(34915845-34915886)
[»] chr8 (27 HSPs)
chr8 (178-225)||(2349378-2349425)
chr8 (178-225)||(22324987-22325034)
chr8 (178-225)||(38252470-38252517)
chr8 (182-225)||(44790454-44790497)
chr8 (183-225)||(12653720-12653762)
chr8 (182-225)||(5392081-5392124)
chr8 (182-220)||(29615830-29615868)
chr8 (183-225)||(32967309-32967351)
chr8 (183-225)||(39171576-39171618)
chr8 (183-220)||(28802800-28802837)
chr8 (184-225)||(31410640-31410681)
chr8 (180-225)||(33190941-33190986)
chr8 (181-225)||(34133158-34133202)
chr8 (184-220)||(42558618-42558654)
chr8 (182-225)||(5962505-5962548)
chr8 (182-225)||(42412415-42412458)
chr8 (180-218)||(32241463-32241501)
chr8 (182-215)||(10728964-10728997)
chr8 (178-215)||(34287121-34287158)
chr8 (182-215)||(41726553-41726586)
chr8 (184-225)||(45425519-45425560)
chr8 (184-216)||(138740-138772)
chr8 (183-215)||(325158-325190)
chr8 (183-215)||(5878268-5878300)
chr8 (183-215)||(11637173-11637205)
chr8 (183-215)||(14117495-14117527)
chr8 (183-215)||(39998196-39998228)
[»] chr1 (28 HSPs)
chr1 (178-220)||(49494201-49494243)
chr1 (178-220)||(51848732-51848774)
chr1 (180-225)||(5442370-5442415)
chr1 (183-220)||(48242628-48242665)
chr1 (180-225)||(52830447-52830492)
chr1 (184-226)||(948619-948661)
chr1 (182-220)||(3555593-3555631)
chr1 (191-225)||(6787288-6787322)
chr1 (183-225)||(7785307-7785349)
chr1 (182-220)||(28839371-28839409)
chr1 (178-220)||(36467233-36467275)
chr1 (178-215)||(5563042-5563079)
chr1 (186-226)||(19532951-19532991)
chr1 (178-225)||(26756004-26756051)
chr1 (178-225)||(28277071-28277118)
chr1 (182-225)||(50267471-50267514)
chr1 (182-220)||(32348250-32348288)
chr1 (182-220)||(51749221-51749259)
chr1 (182-215)||(12267674-12267707)
chr1 (178-215)||(27391375-27391412)
chr1 (178-215)||(36232832-36232869)
chr1 (184-225)||(36784348-36784389)
chr1 (182-215)||(37281040-37281073)
chr1 (183-220)||(43895880-43895917)
chr1 (183-220)||(46880448-46880485)
chr1 (182-218)||(13500769-13500805)
chr1 (184-220)||(45889286-45889322)
chr1 (184-220)||(46496052-46496088)
[»] chr2 (22 HSPs)
chr2 (180-225)||(44534515-44534560)
chr2 (178-225)||(7650007-7650054)
chr2 (182-225)||(30757600-30757643)
chr2 (183-225)||(435110-435152)
chr2 (183-225)||(5211990-5212032)
chr2 (183-225)||(28108407-28108449)
chr2 (180-225)||(3100430-3100475)
chr2 (184-220)||(24775845-24775881)
chr2 (180-215)||(1908536-1908571)
chr2 (182-225)||(28925880-28925923)
chr2 (183-218)||(41436112-41436147)
chr2 (178-225)||(43077758-43077805)
chr2 (180-214)||(6685706-6685740)
chr2 (183-225)||(23684992-23685034)
chr2 (183-225)||(39095664-39095706)
chr2 (182-215)||(9724910-9724943)
chr2 (183-216)||(13538310-13538343)
chr2 (183-220)||(28301467-28301504)
chr2 (180-225)||(28572238-28572283)
chr2 (183-220)||(37247921-37247958)
chr2 (183-215)||(4794606-4794638)
chr2 (183-211)||(7213508-7213536)
[»] scaffold0058 (1 HSPs)
scaffold0058 (178-225)||(14484-14531)
[»] chr3 (26 HSPs)
chr3 (178-225)||(32827336-32827383)
chr3 (186-225)||(33994693-33994732)
chr3 (178-225)||(45392118-45392165)
chr3 (178-225)||(48744287-48744334)
chr3 (178-225)||(54782991-54783038)
chr3 (183-225)||(10855027-10855069)
chr3 (182-220)||(15280637-15280675)
chr3 (178-220)||(37041910-37041952)
chr3 (183-225)||(53876468-53876510)
chr3 (183-225)||(54458341-54458383)
chr3 (178-220)||(54493936-54493978)
chr3 (180-225)||(43639548-43639593)
chr3 (180-225)||(54122256-54122301)
chr3 (184-215)||(30261543-30261574)
chr3 (183-218)||(49003303-49003338)
chr3 (180-218)||(21296542-21296580)
chr3 (183-225)||(22202421-22202463)
chr3 (182-220)||(26134740-26134778)
chr3 (182-220)||(46786018-46786056)
chr3 (182-215)||(1334823-1334856)
chr3 (180-225)||(9017831-9017876)
chr3 (178-211)||(41031600-41031633)
chr3 (183-216)||(52325210-52325243)
chr3 (185-225)||(17777026-17777066)
chr3 (185-225)||(19078327-19078367)
chr3 (183-215)||(41287295-41287327)
[»] scaffold0028 (1 HSPs)
scaffold0028 (183-220)||(26646-26683)
[»] scaffold0221 (1 HSPs)
scaffold0221 (183-225)||(8920-8962)
[»] scaffold0034 (1 HSPs)
scaffold0034 (183-225)||(98858-98900)
[»] scaffold0006 (1 HSPs)
scaffold0006 (180-225)||(229853-229898)
[»] scaffold0003 (1 HSPs)
scaffold0003 (182-215)||(352503-352536)
[»] scaffold0086 (1 HSPs)
scaffold0086 (183-215)||(5851-5883)


Alignment Details
Target: scaffold0045 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 26175 - 26282
Alignment:
Q  1 gtctattaacccttttctttttataccaaatatctatctatattgtactccctccgtcccataataactaaacaatttgcnnnnnnnngtgtttcaaaat 100  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||        ||||||||||||    
T  26175 gtctattaaccctttt--ttttataccaaatatctatctatattgtactccctccgtcccataataactgaacaatttgcaaaaaaaagtgtttcaaaat 26272  T
Q  101 aactaaacca 110  Q
    ||||||||||    
T  26273 aactaaacca 26282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 26350 - 26397
Alignment:
Q  178 atttccaattcaatatattccactttacatttatgatagtggataatg 225  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  26350 atttccaattcaatatattccactttacatttatgatagtggataatg 26397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 3e-16; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 25814392 - 25814439
Alignment:
Q  178 atttccaattcaatatattccactttacatttatgatagtggataatg 225  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  25814392 atttccaattcaatatatttcactttacatttatgatagtggataatg 25814439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 7613735 - 7613782
Alignment:
Q  178 atttccaattcaatatattccactttacatttatgatagtggataatg 225  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  7613735 atttccaattcaatatatttcactttacatttatgatagtggagaatg 7613782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 33988232 - 33988270
Alignment:
Q  182 ccaattcaatatattccactttacatttatgatagtgga 220  Q
    |||||||||||||||||||||||||||||||||||||||    
T  33988232 ccaattcaatatattccactttacatttatgatagtgga 33988270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 180 - 220
Target Start/End: Complemental strand, 42575716 - 42575676
Alignment:
Q  180 ttccaattcaatatattccactttacatttatgatagtgga 220  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  42575716 ttccaattcaatatattccactttgcatttatgatagtgga 42575676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 183 - 225
Target Start/End: Complemental strand, 8369771 - 8369729
Alignment:
Q  183 caattcaatatattccactttacatttatgatagtggataatg 225  Q
    ||||||||||||||||||||| |||||||||||||||| ||||    
T  8369771 caattcaatatattccactttgcatttatgatagtggagaatg 8369729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 183 - 225
Target Start/End: Original strand, 20189925 - 20189967
Alignment:
Q  183 caattcaatatattccactttacatttatgatagtggataatg 225  Q
    ||||||||||||||||||||||||||||||||| |||| ||||    
T  20189925 caattcaatatattccactttacatttatgataatggagaatg 20189967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 182 - 220
Target Start/End: Complemental strand, 35334602 - 35334564
Alignment:
Q  182 ccaattcaatatattccactttacatttatgatagtgga 220  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  35334602 ccaattcaatatattccactttgcatttatgatagtgga 35334564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 184 - 225
Target Start/End: Original strand, 6610871 - 6610912
Alignment:
Q  184 aattcaatatattccactttacatttatgatagtggataatg 225  Q
    ||||||||||||| ||||||||||||||||||||||| ||||    
T  6610871 aattcaatatatttcactttacatttatgatagtggagaatg 6610912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 184 - 225
Target Start/End: Original strand, 13135787 - 13135828
Alignment:
Q  184 aattcaatatattccactttacatttatgatagtggataatg 225  Q
    |||||||||||||||||||| |||||||||||||||| ||||    
T  13135787 aattcaatatattccactttgcatttatgatagtggagaatg 13135828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 184 - 225
Target Start/End: Complemental strand, 35646163 - 35646122
Alignment:
Q  184 aattcaatatattccactttacatttatgatagtggataatg 225  Q
    |||||||||||||||||||| |||||||||||||||| ||||    
T  35646163 aattcaatatattccactttgcatttatgatagtggagaatg 35646122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 180 - 217
Target Start/End: Original strand, 39008158 - 39008195
Alignment:
Q  180 ttccaattcaatatattccactttacatttatgatagt 217  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  39008158 ttccaattcaatatatttcactttacatttatgatagt 39008195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 183 - 220
Target Start/End: Complemental strand, 39183702 - 39183665
Alignment:
Q  183 caattcaatatattccactttacatttatgatagtgga 220  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  39183702 caattcaatatattccactttgcatttatgatagtgga 39183665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 225
Target Start/End: Complemental strand, 11099553 - 11099510
Alignment:
Q  182 ccaattcaatatattccactttacatttatgatagtggataatg 225  Q
    ||||||||||||||||||||||  ||||||||||||||| ||||    
T  11099553 ccaattcaatatattccactttgtatttatgatagtggagaatg 11099510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 215
Target Start/End: Complemental strand, 25111226 - 25111191
Alignment:
Q  180 ttccaattcaatatattccactttacatttatgata 215  Q
    |||||||||||||||||| |||||||||||||||||    
T  25111226 ttccaattcaatatattctactttacatttatgata 25111191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 215
Target Start/End: Complemental strand, 25170317 - 25170282
Alignment:
Q  180 ttccaattcaatatattccactttacatttatgata 215  Q
    |||||||||||||||||| |||||||||||||||||    
T  25170317 ttccaattcaatatattctactttacatttatgata 25170282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 217
Target Start/End: Complemental strand, 16283662 - 16283628
Alignment:
Q  183 caattcaatatattccactttacatttatgatagt 217  Q
    ||||||||||||||||||||| |||||||||||||    
T  16283662 caattcaatatattccactttgcatttatgatagt 16283628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 217
Target Start/End: Complemental strand, 17243029 - 17242995
Alignment:
Q  183 caattcaatatattccactttacatttatgatagt 217  Q
    ||||||||||||||||||||| |||||||||||||    
T  17243029 caattcaatatattccactttgcatttatgatagt 17242995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 225
Target Start/End: Original strand, 24231043 - 24231085
Alignment:
Q  183 caattcaatatattccactttacatttatgatagtggataatg 225  Q
    ||||||||||||||||||||| |||||||| ||||||| ||||    
T  24231043 caattcaatatattccactttccatttatggtagtggagaatg 24231085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 215
Target Start/End: Complemental strand, 4044553 - 4044520
Alignment:
Q  182 ccaattcaatatattccactttacatttatgata 215  Q
    |||||||||||||||| |||||||||||||||||    
T  4044553 ccaattcaatatattctactttacatttatgata 4044520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 225
Target Start/End: Complemental strand, 6735431 - 6735390
Alignment:
Q  184 aattcaatatattccactttacatttatgatagtggataatg 225  Q
    |||| ||||||||||||||| |||||||||||||||| ||||    
T  6735431 aatttaatatattccactttgcatttatgatagtggagaatg 6735390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 215
Target Start/End: Original strand, 16954893 - 16954930
Alignment:
Q  178 atttccaattcaatatattccactttacatttatgata 215  Q
    |||||||||||||||||||| | |||||||||||||||    
T  16954893 atttccaattcaatatattctattttacatttatgata 16954930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 225
Target Start/End: Complemental strand, 22582949 - 22582905
Alignment:
Q  180 ttccaattcaatatattccactttacatttatgatagtggataatg 225  Q
    |||||||||||||| ||||||||| |||||||||||||||| ||||    
T  22582949 ttccaattcaatat-ttccactttgcatttatgatagtggagaatg 22582905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 220
Target Start/End: Original strand, 42211366 - 42211403
Alignment:
Q  183 caattcaatatattccactttacatttatgatagtgga 220  Q
    |||||||||||||| |||||| ||||||||||||||||    
T  42211366 caattcaatatatttcactttgcatttatgatagtgga 42211403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 19889608 - 19889576
Alignment:
Q  183 caattcaatatattccactttacatttatgata 215  Q
    ||||||||||||||| |||||||||||||||||    
T  19889608 caattcaatatattctactttacatttatgata 19889576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 25344813 - 25344781
Alignment:
Q  183 caattcaatatattccactttacatttatgata 215  Q
    ||||||||||||||| |||||||||||||||||    
T  25344813 caattcaatatattctactttacatttatgata 25344781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 39979808 - 39979855
Alignment:
Q  178 atttccaattcaatatattccactttacatttatgatagtggataatg 225  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  39979808 atttccaattcaatatattccactttacatttatgatagtggagaatg 39979855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 178 - 225
Target Start/End: Complemental strand, 44020841 - 44020794
Alignment:
Q  178 atttccaattcaatatattccactttacatttatgatagtggataatg 225  Q
    ||||| |||||||||| |||||||||||||||||||||||||||||||    
T  44020841 atttctaattcaatatgttccactttacatttatgatagtggataatg 44020794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 182 - 225
Target Start/End: Original strand, 49812261 - 49812304
Alignment:
Q  182 ccaattcaatatattccactttacatttatgatagtggataatg 225  Q
    ||||| ||||||||||||||||||||||||||||||||||||||    
T  49812261 ccaatacaatatattccactttacatttatgatagtggataatg 49812304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 9093840 - 9093794
Alignment:
Q  179 tttccaattcaatatattccactttacatttatgatagtggataatg 225  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||||    
T  9093840 tttccaatttaatatattccactttacatttatgatagtggagaatg 9093794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 184 - 225
Target Start/End: Original strand, 48740554 - 48740595
Alignment:
Q  184 aattcaatatattccactttacatttatgatagtggataatg 225  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  48740554 aattcaatatattccactttacatttatgatagtggagaatg 48740595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 215
Target Start/End: Original strand, 25149481 - 25149516
Alignment:
Q  180 ttccaattcaatatattccactttacatttatgata 215  Q
    ||||||||||||||||||||||||||||||||||||    
T  25149481 ttccaattcaatatattccactttacatttatgata 25149516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 51527446 - 51527493
Alignment:
Q  178 atttccaattcaatatattccactttacatttatgatagtggataatg 225  Q
    |||| |||||||||||||| ||||||||||||||||||||||| ||||    
T  51527446 attttcaattcaatatatttcactttacatttatgatagtggagaatg 51527493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 178 - 216
Target Start/End: Original strand, 38977019 - 38977057
Alignment:
Q  178 atttccaattcaatatattccactttacatttatgatag 216  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  38977019 attttcaattcaatatattccactttacatttatgatag 38977057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 182 - 220
Target Start/End: Complemental strand, 41710219 - 41710181
Alignment:
Q  182 ccaattcaatatattccactttacatttatgatagtgga 220  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  41710219 ccaattcaatatattccactttgcatttatgatagtgga 41710181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 180 - 217
Target Start/End: Complemental strand, 1796319 - 1796282
Alignment:
Q  180 ttccaattcaatatattccactttacatttatgatagt 217  Q
    |||||||||||||||||||||||| |||||||||||||    
T  1796319 ttccaattcaatatattccactttgcatttatgatagt 1796282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 180 - 225
Target Start/End: Complemental strand, 18849836 - 18849791
Alignment:
Q  180 ttccaattcaatatattccactttacatttatgatagtggataatg 225  Q
    ||||||||||||||||| |||||| |||||||||||||||| ||||    
T  18849836 ttccaattcaatatatttcactttgcatttatgatagtggagaatg 18849791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 183 - 220
Target Start/End: Original strand, 42544242 - 42544279
Alignment:
Q  183 caattcaatatattccactttacatttatgatagtgga 220  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  42544242 caattcaatatattccactttgcatttatgatagtgga 42544279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 180 - 217
Target Start/End: Complemental strand, 51572305 - 51572268
Alignment:
Q  180 ttccaattcaatatattccactttacatttatgatagt 217  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  51572305 ttccaattcaatatattacactttacatttatgatagt 51572268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 183 - 220
Target Start/End: Complemental strand, 54729558 - 54729521
Alignment:
Q  183 caattcaatatattccactttacatttatgatagtgga 220  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  54729558 caattcaatatattccactttgcatttatgatagtgga 54729521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 220
Target Start/End: Original strand, 33047522 - 33047562
Alignment:
Q  180 ttccaattcaatatattccactttacatttatgatagtgga 220  Q
    ||||||||||||||||||||||||  |||||||||||||||    
T  33047522 ttccaattcaatatattccactttgtatttatgatagtgga 33047562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 220
Target Start/End: Complemental strand, 42024278 - 42024238
Alignment:
Q  180 ttccaattcaatatattccactttacatttatgatagtgga 220  Q
    |||||||||||||||||||||||| ||||||| ||||||||    
T  42024278 ttccaattcaatatattccactttgcatttataatagtgga 42024238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 213
Target Start/End: Complemental strand, 1825327 - 1825292
Alignment:
Q  178 atttccaattcaatatattccactttacatttatga 213  Q
    |||| |||||||||||||||||||||||||||||||    
T  1825327 attttcaattcaatatattccactttacatttatga 1825292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 225
Target Start/End: Complemental strand, 4360482 - 4360440
Alignment:
Q  183 caattcaatatattccactttacatttatgatagtggataatg 225  Q
    ||||||||||||||||||||| |||||||| ||||||| ||||    
T  4360482 caattcaatatattccactttgcatttatgctagtggagaatg 4360440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 217
Target Start/End: Original strand, 17237076 - 17237110
Alignment:
Q  183 caattcaatatattccactttacatttatgatagt 217  Q
    ||||||||||||||||||||| |||||||||||||    
T  17237076 caattcaatatattccactttgcatttatgatagt 17237110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 225
Target Start/End: Complemental strand, 22872462 - 22872420
Alignment:
Q  183 caattcaatatattccactttacatttatgatagtggataatg 225  Q
    ||||||||||||||||||||| ||||||||||| |||| ||||    
T  22872462 caattcaatatattccactttgcatttatgataatggagaatg 22872420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 225
Target Start/End: Original strand, 27977180 - 27977222
Alignment:
Q  183 caattcaatatattccactttacatttatgatagtggataatg 225  Q
    ||||||||||||||||||||| ||||||| |||||||| ||||    
T  27977180 caattcaatatattccactttgcatttataatagtggagaatg 27977222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 217
Target Start/End: Original strand, 29644388 - 29644422
Alignment:
Q  183 caattcaatatattccactttacatttatgatagt 217  Q
    ||||||||||||||| |||||||||||||||||||    
T  29644388 caattcaatatattctactttacatttatgatagt 29644422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 215
Target Start/End: Complemental strand, 29550802 - 29550769
Alignment:
Q  182 ccaattcaatatattccactttacatttatgata 215  Q
    |||||||||||||||| |||||||||||||||||    
T  29550802 ccaattcaatatattctactttacatttatgata 29550769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 43421330 - 43421375
Alignment:
Q  180 ttccaattcaatatattccactttacatttatgatagtggataatg 225  Q
    ||||||||||||||||| || ||| |||||||||||||||| ||||    
T  43421330 ttccaattcaatatatttcattttgcatttatgatagtggagaatg 43421375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 211
Target Start/End: Original strand, 49401684 - 49401717
Alignment:
Q  178 atttccaattcaatatattccactttacatttat 211  Q
    |||||||||||||||||||| |||||||||||||    
T  49401684 atttccaattcaatatattctactttacatttat 49401717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Original strand, 3505755 - 3505787
Alignment:
Q  183 caattcaatatattccactttacatttatgata 215  Q
    ||||||||||||||| |||||||||||||||||    
T  3505755 caattcaatatattctactttacatttatgata 3505787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 32949923 - 32949891
Alignment:
Q  183 caattcaatatattccactttacatttatgata 215  Q
    ||||||||||||||| |||||||||||||||||    
T  32949923 caattcaatatattctactttacatttatgata 32949891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 39052975 - 39052943
Alignment:
Q  183 caattcaatatattccactttacatttatgata 215  Q
    ||||||||||||||| |||||||||||||||||    
T  39052975 caattcaatatattctactttacatttatgata 39052943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 48400705 - 48400673
Alignment:
Q  183 caattcaatatattccactttacatttatgata 215  Q
    ||||||||||||||| |||||||||||||||||    
T  48400705 caattcaatatattctactttacatttatgata 48400673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 216
Target Start/End: Original strand, 49306621 - 49306653
Alignment:
Q  184 aattcaatatattccactttacatttatgatag 216  Q
    |||||||||||||||||||| ||||||||||||    
T  49306621 aattcaatatattccactttgcatttatgatag 49306653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 219
Target Start/End: Complemental strand, 50328145 - 50328109
Alignment:
Q  183 caattcaatatattccactttacatttatgatagtgg 219  Q
    |||||||||||||| |||||| |||||||||||||||    
T  50328145 caattcaatatatttcactttgcatttatgatagtgg 50328109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 178 - 224
Target Start/End: Original strand, 48981684 - 48981730
Alignment:
Q  178 atttccaattcaatatattccactttacatttatgatagtggataat 224  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||    
T  48981684 atttccaatttaatatattccactttacatttatgatagtggataat 48981730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 178 - 220
Target Start/End: Complemental strand, 49100581 - 49100539
Alignment:
Q  178 atttccaattcaatatattccactttacatttatgatagtgga 220  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  49100581 atttccaattcaatatattccactttacatttatgatagtgga 49100539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 178 - 225
Target Start/End: Complemental strand, 21387559 - 21387512
Alignment:
Q  178 atttccaattcaatatattccactttacatttatgatagtggataatg 225  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||    
T  21387559 attttcaattcaatatattccactttacatttatgatagtggagaatg 21387512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 180 - 225
Target Start/End: Complemental strand, 7425955 - 7425910
Alignment:
Q  180 ttccaattcaatatattccactttacatttatgatagtggataatg 225  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||    
T  7425955 ttccaattcaatatattccactttgcatttatgatagtggagaatg 7425910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 225
Target Start/End: Complemental strand, 5724786 - 5724739
Alignment:
Q  178 atttccaattcaatatattccactttacatttatgatagtggataatg 225  Q
    ||||| ||||||||||||| ||||||||||||||||||||||| ||||    
T  5724786 atttctaattcaatatatttcactttacatttatgatagtggagaatg 5724739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 18235218 - 18235265
Alignment:
Q  178 atttccaattcaatatattccactttacatttatgatagtggataatg 225  Q
    ||||||||||  ||||||||||||||||||||||||||||||| ||||    
T  18235218 atttccaatttcatatattccactttacatttatgatagtggagaatg 18235265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 29257579 - 29257617
Alignment:
Q  182 ccaattcaatatattccactttacatttatgatagtgga 220  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  29257579 ccaattcaatatattccactttgcatttatgatagtgga 29257617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 183 - 225
Target Start/End: Complemental strand, 37490692 - 37490650
Alignment:
Q  183 caattcaatatattccactttacatttatgatagtggataatg 225  Q
    ||||||||||||||||||||| |||||||||||||||| ||||    
T  37490692 caattcaatatattccactttgcatttatgatagtggagaatg 37490650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 220
Target Start/End: Complemental strand, 2846753 - 2846713
Alignment:
Q  180 ttccaattcaatatattccactttacatttatgatagtgga 220  Q
    ||||||||||||||||||||||||  |||||||||||||||    
T  2846753 ttccaattcaatatattccactttgaatttatgatagtgga 2846713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 36117689 - 36117737
Alignment:
Q  178 atttccaattcaatatattccactttacatttatg-atagtggataatg 225  Q
    |||| |||||||||||||||||||||||||||||| |||||||| ||||    
T  36117689 attttcaattcaatatattccactttacatttatgaatagtggagaatg 36117737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 215
Target Start/End: Original strand, 18731469 - 18731504
Alignment:
Q  180 ttccaattcaatatattccactttacatttatgata 215  Q
    |||||||||||||||||| |||||||||||||||||    
T  18731469 ttccaattcaatatattctactttacatttatgata 18731504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 23703944 - 23703991
Alignment:
Q  178 atttccaattcaatatattccactttacatttatgatagtggataatg 225  Q
    |||| |||||||||||||| || |||||||||||||||||||| ||||    
T  23703944 attttcaattcaatatatttcattttacatttatgatagtggagaatg 23703991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 30463044 - 30463091
Alignment:
Q  178 atttccaattcaatatattccactttacatttatgatagtggataatg 225  Q
    |||| ||||||||||||||||| |||||||||||||| ||||| ||||    
T  30463044 attttcaattcaatatattccattttacatttatgattgtggagaatg 30463091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 225
Target Start/End: Complemental strand, 31581522 - 31581475
Alignment:
Q  178 atttccaattcaatatattccactttacatttatgatagtggataatg 225  Q
    |||| ||||||||||||||||| ||||||||||||||| |||| ||||    
T  31581522 attttcaattcaatatattccattttacatttatgatattggagaatg 31581475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 222
Target Start/End: Complemental strand, 34001933 - 34001894
Alignment:
Q  183 caattcaatatattccactttacatttatgatagtggata 222  Q
    ||||||||||||||||||||| ||||||||||| ||||||    
T  34001933 caattcaatatattccactttgcatttatgataatggata 34001894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 47454032 - 47454079
Alignment:
Q  178 atttccaattcaatatattccactttacatttatgatagtggataatg 225  Q
    |||| ||| |||||||||| ||||||||||||||||||||||| ||||    
T  47454032 atttacaaatcaatatatttcactttacatttatgatagtggagaatg 47454079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 220
Target Start/End: Original strand, 37157198 - 37157240
Alignment:
Q  178 atttccaattcaatatattccactttacatttatgatagtgga 220  Q
    |||| ||||| ||||||||| ||||||||||||||||||||||    
T  37157198 attttcaatttaatatattctactttacatttatgatagtgga 37157240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 225
Target Start/End: Complemental strand, 2842125 - 2842084
Alignment:
Q  184 aattcaatatattccactttacatttatgatagtggataatg 225  Q
    ||||||||||||| |||||| |||||||||||||||| ||||    
T  2842125 aattcaatatatttcactttgcatttatgatagtggagaatg 2842084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 215
Target Start/End: Original strand, 28333203 - 28333236
Alignment:
Q  182 ccaattcaatatattccactttacatttatgata 215  Q
    |||||||||||||||| |||||||||||||||||    
T  28333203 ccaattcaatatattctactttacatttatgata 28333236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 220
Target Start/End: Complemental strand, 29434654 - 29434617
Alignment:
Q  183 caattcaatatattccactttacatttatgatagtgga 220  Q
    ||||||||||||||||||||| ||||||||| ||||||    
T  29434654 caattcaatatattccactttgcatttatgaaagtgga 29434617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 215
Target Start/End: Original strand, 32776015 - 32776048
Alignment:
Q  182 ccaattcaatatattccactttacatttatgata 215  Q
    |||||||||||||||| |||||||||||||||||    
T  32776015 ccaattcaatatattctactttacatttatgata 32776048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 225
Target Start/End: Complemental strand, 38181951 - 38181906
Alignment:
Q  180 ttccaattcaatatattccactttacatttatgatagtggataatg 225  Q
    |||||||||||||||||| | ||| |||||||||||||||| ||||    
T  38181951 ttccaattcaatatattctattttgcatttatgatagtggaaaatg 38181906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 215
Target Start/End: Original strand, 38589766 - 38589799
Alignment:
Q  182 ccaattcaatatattccactttacatttatgata 215  Q
    |||||||||||||||| |||||||||||||||||    
T  38589766 ccaattcaatatattctactttacatttatgata 38589799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 215
Target Start/End: Complemental strand, 45218233 - 45218200
Alignment:
Q  182 ccaattcaatatattccactttacatttatgata 215  Q
    |||||||||||||||| |||||||||||||||||    
T  45218233 ccaattcaatatattctactttacatttatgata 45218200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Original strand, 2849288 - 2849320
Alignment:
Q  183 caattcaatatattccactttacatttatgata 215  Q
    ||||||||||||||| |||||||||||||||||    
T  2849288 caattcaatatattctactttacatttatgata 2849320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 3667951 - 3667919
Alignment:
Q  183 caattcaatatattccactttacatttatgata 215  Q
    ||||||||||||||| |||||||||||||||||    
T  3667951 caattcaatatattctactttacatttatgata 3667919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 7456657 - 7456621
Alignment:
Q  184 aattcaatatattccactttacatttatgatagtgga 220  Q
    |||| |||||||||||||||| |||||||||||||||    
T  7456657 aatttaatatattccactttatatttatgatagtgga 7456621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Original strand, 24288456 - 24288488
Alignment:
Q  183 caattcaatatattccactttacatttatgata 215  Q
    ||||||||||||||| |||||||||||||||||    
T  24288456 caattcaatatattctactttacatttatgata 24288488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Original strand, 34064248 - 34064280
Alignment:
Q  183 caattcaatatattccactttacatttatgata 215  Q
    ||||||||||||||| |||||||||||||||||    
T  34064248 caattcaatatattctactttacatttatgata 34064280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 37496471 - 37496439
Alignment:
Q  183 caattcaatatattccactttacatttatgata 215  Q
    ||||||||||||||| |||||||||||||||||    
T  37496471 caattcaatatattctactttacatttatgata 37496439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 31265809 - 31265854
Alignment:
Q  180 ttccaattcaatatattccactttacatttatgatagtggataatg 225  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||    
T  31265809 ttccaattcaatatattccactttacatttatgatagtggagaatg 31265854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 15081451 - 15081498
Alignment:
Q  178 atttccaattcaatatattccactttacatttatgatagtggataatg 225  Q
    |||||||||||||||||||||||||||| |||||||||||||| ||||    
T  15081451 atttccaattcaatatattccactttacgtttatgatagtggagaatg 15081498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 225
Target Start/End: Complemental strand, 7301159 - 7301112
Alignment:
Q  178 atttccaattcaatatattccactttacatttatgatagtggataatg 225  Q
    |||| ||||||||||||||||||||||||||||||||| |||| ||||    
T  7301159 attttcaattcaatatattccactttacatttatgataatggagaatg 7301112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 225
Target Start/End: Complemental strand, 9755226 - 9755179
Alignment:
Q  178 atttccaattcaatatattccactttacatttatgatagtggataatg 225  Q
    |||| ||||||||||||||| ||| |||||||||||||||||| ||||    
T  9755226 attttcaattcaatatattctactctacatttatgatagtggagaatg 9755179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 220
Target Start/End: Complemental strand, 30064024 - 30063986
Alignment:
Q  182 ccaattcaatatattccactttacatttatgatagtgga 220  Q
    |||||||||||||||||||||| ||||||| ||||||||    
T  30064024 ccaattcaatatattccactttgcatttataatagtgga 30063986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 215
Target Start/End: Complemental strand, 33018019 - 33017986
Alignment:
Q  182 ccaattcaatatattccactttacatttatgata 215  Q
    |||||||||||||||| |||||||||||||||||    
T  33018019 ccaattcaatatattctactttacatttatgata 33017986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 215
Target Start/End: Complemental strand, 33921544 - 33921511
Alignment:
Q  182 ccaattcaatatattccactttacatttatgata 215  Q
    |||||||||||||||| |||||||||||||||||    
T  33921544 ccaattcaatatattctactttacatttatgata 33921511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 225
Target Start/End: Complemental strand, 34915886 - 34915845
Alignment:
Q  184 aattcaatatattccactttacatttatgatagtggataatg 225  Q
    |||||||||||||||||||| ||||||||||| |||| ||||    
T  34915886 aattcaatatattccactttgcatttatgataatggagaatg 34915845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 2349378 - 2349425
Alignment:
Q  178 atttccaattcaatatattccactttacatttatgatagtggataatg 225  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||||    
T  2349378 atttccaattcaatatattccaatttacatttatgatagtggagaatg 2349425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 178 - 225
Target Start/End: Complemental strand, 22325034 - 22324987
Alignment:
Q  178 atttccaattcaatatattccactttacatttatgatagtggataatg 225  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||    
T  22325034 attttcaattcaatatattccactttacatttatgatagtggaaaatg 22324987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 178 - 225
Target Start/End: Complemental strand, 38252517 - 38252470
Alignment:
Q  178 atttccaattcaatatattccactttacatttatgatagtggataatg 225  Q
    |||||||||||||||||||||||||||||||||||| |||||| ||||    
T  38252517 atttccaattcaatatattccactttacatttatgacagtggagaatg 38252470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 182 - 225
Target Start/End: Complemental strand, 44790497 - 44790454
Alignment:
Q  182 ccaattcaatatattccactttacatttatgatagtggataatg 225  Q
    ||||||||||||||||||||||||||||||||||||||| ||||    
T  44790497 ccaattcaatatattccactttacatttatgatagtggagaatg 44790454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 183 - 225
Target Start/End: Original strand, 12653720 - 12653762
Alignment:
Q  183 caattcaatatattccactttacatttatgatagtggataatg 225  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  12653720 caattcaatatattccactttacatttataatagtggataatg 12653762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 225
Target Start/End: Original strand, 5392081 - 5392124
Alignment:
Q  182 ccaattcaatatattccactttacatttatgatagtggataatg 225  Q
    |||||||||||||||||||||| |||||||||||||||| ||||    
T  5392081 ccaattcaatatattccactttgcatttatgatagtggagaatg 5392124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 29615830 - 29615868
Alignment:
Q  182 ccaattcaatatattccactttacatttatgatagtgga 220  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  29615830 ccaattcaatatattccactttacatttatgacagtgga 29615868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 183 - 225
Target Start/End: Complemental strand, 32967351 - 32967309
Alignment:
Q  183 caattcaatatattccactttacatttatgatagtggataatg 225  Q
    |||||||||||||||||||||| ||||||||||||||| ||||    
T  32967351 caattcaatatattccactttaaatttatgatagtggagaatg 32967309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 183 - 225
Target Start/End: Original strand, 39171576 - 39171618
Alignment:
Q  183 caattcaatatattccactttacatttatgatagtggataatg 225  Q
    ||||||||||||||||||||| ||||||||||||| |||||||    
T  39171576 caattcaatatattccactttgcatttatgatagtagataatg 39171618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 183 - 220
Target Start/End: Original strand, 28802800 - 28802837
Alignment:
Q  183 caattcaatatattccactttacatttatgatagtgga 220  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  28802800 caattcaatatattccactttgcatttatgatagtgga 28802837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 184 - 225
Target Start/End: Complemental strand, 31410681 - 31410640
Alignment:
Q  184 aattcaatatattccactttacatttatgatagtggataatg 225  Q
    |||||||||||||||||||| |||||||||||||| ||||||    
T  31410681 aattcaatatattccactttgcatttatgatagtgtataatg 31410640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 180 - 225
Target Start/End: Complemental strand, 33190986 - 33190941
Alignment:
Q  180 ttccaattcaatatattccactttacatttatgatagtggataatg 225  Q
    |||||||||||||||||||||| | |||||||||||||||| ||||    
T  33190986 ttccaattcaatatattccactatgcatttatgatagtggagaatg 33190941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 225
Target Start/End: Original strand, 34133158 - 34133202
Alignment:
Q  181 tccaattcaatatattccactttacatttatgatagtggataatg 225  Q
    |||||||||||||||| || |||||||||||||||||||| ||||    
T  34133158 tccaattcaatatatttcattttacatttatgatagtggagaatg 34133202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 42558654 - 42558618
Alignment:
Q  184 aattcaatatattccactttacatttatgatagtgga 220  Q
    |||||||||||||||||||| ||||||||||||||||    
T  42558654 aattcaatatattccactttgcatttatgatagtgga 42558618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 225
Target Start/End: Complemental strand, 5962548 - 5962505
Alignment:
Q  182 ccaattcaatatattccactttacatttatgatagtggataatg 225  Q
    |||||||||||||||||||||| ||||||| |||||||| ||||    
T  5962548 ccaattcaatatattccactttgcatttataatagtggagaatg 5962505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 225
Target Start/End: Complemental strand, 42412458 - 42412415
Alignment:
Q  182 ccaattcaatatattccactttacatttatgatagtggataatg 225  Q
    |||||||||||||||||||||| ||||||||||| |||| ||||    
T  42412458 ccaattcaatatattccactttgcatttatgataatggagaatg 42412415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 218
Target Start/End: Complemental strand, 32241501 - 32241463
Alignment:
Q  180 ttccaattcaatatattccactttacatttatgatagtg 218  Q
    |||||||||| ||||||||||||| ||||||||||||||    
T  32241501 ttccaattcattatattccactttgcatttatgatagtg 32241463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 215
Target Start/End: Complemental strand, 10728997 - 10728964
Alignment:
Q  182 ccaattcaatatattccactttacatttatgata 215  Q
    |||||||||||||||||||||| |||||||||||    
T  10728997 ccaattcaatatattccactttgcatttatgata 10728964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 215
Target Start/End: Complemental strand, 34287158 - 34287121
Alignment:
Q  178 atttccaattcaatatattccactttacatttatgata 215  Q
    ||||| ||||||||||||||||||||||||||| ||||    
T  34287158 atttctaattcaatatattccactttacatttacgata 34287121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 215
Target Start/End: Original strand, 41726553 - 41726586
Alignment:
Q  182 ccaattcaatatattccactttacatttatgata 215  Q
    |||||||||||||||| |||||||||||||||||    
T  41726553 ccaattcaatatattctactttacatttatgata 41726586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 225
Target Start/End: Original strand, 45425519 - 45425560
Alignment:
Q  184 aattcaatatattccactttacatttatgatagtggataatg 225  Q
    |||| ||||||||||||||| |||||||||||||||| ||||    
T  45425519 aatttaatatattccactttgcatttatgatagtggaaaatg 45425560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 216
Target Start/End: Complemental strand, 138772 - 138740
Alignment:
Q  184 aattcaatatattccactttacatttatgatag 216  Q
    |||||||||||||||||||| ||||||||||||    
T  138772 aattcaatatattccactttgcatttatgatag 138740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 325190 - 325158
Alignment:
Q  183 caattcaatatattccactttacatttatgata 215  Q
    |||||||||||||||||||||| ||||||||||    
T  325190 caattcaatatattccactttatatttatgata 325158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 5878300 - 5878268
Alignment:
Q  183 caattcaatatattccactttacatttatgata 215  Q
    ||||||||||||||| |||||||||||||||||    
T  5878300 caattcaatatattctactttacatttatgata 5878268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Original strand, 11637173 - 11637205
Alignment:
Q  183 caattcaatatattccactttacatttatgata 215  Q
    ||||||||||||||| |||||||||||||||||    
T  11637173 caattcaatatattctactttacatttatgata 11637205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Original strand, 14117495 - 14117527
Alignment:
Q  183 caattcaatatattccactttacatttatgata 215  Q
    ||||||||||||||| |||||||||||||||||    
T  14117495 caattcaatatattcaactttacatttatgata 14117527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Original strand, 39998196 - 39998228
Alignment:
Q  183 caattcaatatattccactttacatttatgata 215  Q
    ||||||||||||||| |||||||||||||||||    
T  39998196 caattcaatatattctactttacatttatgata 39998228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 178 - 220
Target Start/End: Complemental strand, 49494243 - 49494201
Alignment:
Q  178 atttccaattcaatatattccactttacatttatgatagtgga 220  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  49494243 atttctaattcaatatattccactttacatttatgatagtgga 49494201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 178 - 220
Target Start/End: Complemental strand, 51848774 - 51848732
Alignment:
Q  178 atttccaattcaatatattccactttacatttatgatagtgga 220  Q
    ||||||||||||||||||||||||||| |||||||||||||||    
T  51848774 atttccaattcaatatattccactttatatttatgatagtgga 51848732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 5442370 - 5442415
Alignment:
Q  180 ttccaattcaatatattccactttacatttatgatagtggataatg 225  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||    
T  5442370 ttccaattcaatatattccactttgcatttatgatagtggagaatg 5442415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 183 - 220
Target Start/End: Complemental strand, 48242665 - 48242628
Alignment:
Q  183 caattcaatatattccactttacatttatgatagtgga 220  Q
    ||||||||||||||||||||||||||||||||||||||    
T  48242665 caattcaatatattccactttacatttatgatagtgga 48242628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 180 - 225
Target Start/End: Complemental strand, 52830492 - 52830447
Alignment:
Q  180 ttccaattcaatatattccactttacatttatgatagtggataatg 225  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||    
T  52830492 ttccaattgaatatattccactttacatttatgatagtggaaaatg 52830447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 948661 - 948619
Alignment:
Q  184 aattcaatatattccactttacatttatgatagtggataatga 226  Q
    |||||||||||||||||||| |||||||||||||||| |||||    
T  948661 aattcaatatattccactttgcatttatgatagtggagaatga 948619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 182 - 220
Target Start/End: Complemental strand, 3555631 - 3555593
Alignment:
Q  182 ccaattcaatatattccactttacatttatgatagtgga 220  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  3555631 ccaattcaatatattccactttgcatttatgatagtgga 3555593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 191 - 225
Target Start/End: Original strand, 6787288 - 6787322
Alignment:
Q  191 tatattccactttacatttatgatagtggataatg 225  Q
    |||||||||||||||||||||||||||||||||||    
T  6787288 tatattccactttacatttatgatagtggataatg 6787322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 183 - 225
Target Start/End: Complemental strand, 7785349 - 7785307
Alignment:
Q  183 caattcaatatattccactttacatttatgatagtggataatg 225  Q
    |||||||||||||| ||||||||||||||||||||||| ||||    
T  7785349 caattcaatatatttcactttacatttatgatagtggagaatg 7785307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 28839371 - 28839409
Alignment:
Q  182 ccaattcaatatattccactttacatttatgatagtgga 220  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  28839371 ccaattcaatatattccactttgcatttatgatagtgga 28839409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 178 - 220
Target Start/End: Complemental strand, 36467275 - 36467233
Alignment:
Q  178 atttccaattcaatatattccactttacatttatgatagtgga 220  Q
    ||||||||||||||||||| |||||||||||||| ||||||||    
T  36467275 atttccaattcaatatatttcactttacatttatcatagtgga 36467233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 215
Target Start/End: Original strand, 5563042 - 5563079
Alignment:
Q  178 atttccaattcaatatattccactttacatttatgata 215  Q
    |||||||||||||||| |||||||||||||||||||||    
T  5563042 atttccaattcaatatgttccactttacatttatgata 5563079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 226
Target Start/End: Complemental strand, 19532991 - 19532951
Alignment:
Q  186 ttcaatatattccactttacatttatgatagtggataatga 226  Q
    ||||||||||| ||||||||||||||||||||||| |||||    
T  19532991 ttcaatatatttcactttacatttatgatagtggagaatga 19532951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 26756004 - 26756051
Alignment:
Q  178 atttccaattcaatatattccactttacatttatgatagtggataatg 225  Q
    |||| |||||||||||||| ||||||| ||||||||||||||| ||||    
T  26756004 attttcaattcaatatattacactttatatttatgatagtggagaatg 26756051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 225
Target Start/End: Complemental strand, 28277118 - 28277071
Alignment:
Q  178 atttccaattcaatatattccactttacatttatgatagtggataatg 225  Q
    |||| |||||||||||||| |||||||||||||||||| |||| ||||    
T  28277118 attttcaattcaatatatttcactttacatttatgatactggagaatg 28277071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 225
Target Start/End: Complemental strand, 50267514 - 50267471
Alignment:
Q  182 ccaattcaatatattccactttacatttatgatagtggataatg 225  Q
    ||||||||||||||| |||||||||||||||||| |||| ||||    
T  50267514 ccaattcaatatatttcactttacatttatgataatggagaatg 50267471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 32348250 - 32348288
Alignment:
Q  182 ccaattcaatatattccactttacatttatgatagtgga 220  Q
    |||||||||||||||||||||| ||||| ||||||||||    
T  32348250 ccaattcaatatattccactttgcatttgtgatagtgga 32348288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 220
Target Start/End: Complemental strand, 51749259 - 51749221
Alignment:
Q  182 ccaattcaatatattccactttacatttatgatagtgga 220  Q
    |||||||||||||||||||||| ||||||||||| ||||    
T  51749259 ccaattcaatatattccactttgcatttatgataatgga 51749221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 215
Target Start/End: Complemental strand, 12267707 - 12267674
Alignment:
Q  182 ccaattcaatatattccactttacatttatgata 215  Q
    |||||||||||||||| |||||||||||||||||    
T  12267707 ccaattcaatatattctactttacatttatgata 12267674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 215
Target Start/End: Original strand, 27391375 - 27391412
Alignment:
Q  178 atttccaattcaatatattccactttacatttatgata 215  Q
    |||| ||||||||||||||||||||| |||||||||||    
T  27391375 attttcaattcaatatattccactttgcatttatgata 27391412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 215
Target Start/End: Complemental strand, 36232869 - 36232832
Alignment:
Q  178 atttccaattcaatatattccactttacatttatgata 215  Q
    |||||||||||||||||||| |||||| ||||||||||    
T  36232869 atttccaattcaatatattctactttatatttatgata 36232832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 225
Target Start/End: Original strand, 36784348 - 36784389
Alignment:
Q  184 aattcaatatattccactttacatttatgatagtggataatg 225  Q
    ||||||||||||| |||||| |||||||||||||||| ||||    
T  36784348 aattcaatatatttcactttgcatttatgatagtggaaaatg 36784389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 215
Target Start/End: Complemental strand, 37281073 - 37281040
Alignment:
Q  182 ccaattcaatatattccactttacatttatgata 215  Q
    |||||||||||||||| |||||||||||||||||    
T  37281073 ccaattcaatatattctactttacatttatgata 37281040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 220
Target Start/End: Original strand, 43895880 - 43895917
Alignment:
Q  183 caattcaatatattccactttacatttatgatagtgga 220  Q
    ||||||||||||||| ||||| ||||||||||||||||    
T  43895880 caattcaatatattcaactttgcatttatgatagtgga 43895917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 220
Target Start/End: Original strand, 46880448 - 46880485
Alignment:
Q  183 caattcaatatattccactttacatttatgatagtgga 220  Q
    ||||| ||||||||| ||||||||||||||||||||||    
T  46880448 caatttaatatattcaactttacatttatgatagtgga 46880485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 218
Target Start/End: Complemental strand, 13500805 - 13500769
Alignment:
Q  182 ccaattcaatatattccactttacatttatgatagtg 218  Q
    |||||||||||| ||||||||| ||||||||||||||    
T  13500805 ccaattcaatattttccactttgcatttatgatagtg 13500769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 45889322 - 45889286
Alignment:
Q  184 aattcaatatattccactttacatttatgatagtgga 220  Q
    |||||||||||||||||||| ||||||||||| ||||    
T  45889322 aattcaatatattccactttgcatttatgataatgga 45889286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 46496052 - 46496088
Alignment:
Q  184 aattcaatatattccactttacatttatgatagtgga 220  Q
    |||||||||||||||||||| ||||||||||| ||||    
T  46496052 aattcaatatattccactttgcatttatgataatgga 46496088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 180 - 225
Target Start/End: Complemental strand, 44534560 - 44534515
Alignment:
Q  180 ttccaattcaatatattccactttacatttatgatagtggataatg 225  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||    
T  44534560 ttccaattcaatatattccactttgcatttatgatagtggagaatg 44534515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 225
Target Start/End: Complemental strand, 7650054 - 7650007
Alignment:
Q  178 atttccaattcaatatattccactttacatttatgatagtggataatg 225  Q
    |||| ||||||||||||||||||||| |||||||||||||||| ||||    
T  7650054 attttcaattcaatatattccactttgcatttatgatagtggagaatg 7650007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 225
Target Start/End: Complemental strand, 30757643 - 30757600
Alignment:
Q  182 ccaattcaatatattccactttacatttatgatagtggataatg 225  Q
    |||||||||||||||||| |||||||||||||||||||| ||||    
T  30757643 ccaattcaatatattccaatttacatttatgatagtggaaaatg 30757600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 183 - 225
Target Start/End: Complemental strand, 435152 - 435110
Alignment:
Q  183 caattcaatatattccactttacatttatgatagtggataatg 225  Q
    |||||||||||||| ||||||||||||||||||||||| ||||    
T  435152 caattcaatatatttcactttacatttatgatagtggagaatg 435110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 183 - 225
Target Start/End: Complemental strand, 5212032 - 5211990
Alignment:
Q  183 caattcaatatattccactttacatttatgatagtggataatg 225  Q
    ||||||||||||||||||||| ||||||||||||| |||||||    
T  5212032 caattcaatatattccactttgcatttatgatagttgataatg 5211990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 183 - 225
Target Start/End: Complemental strand, 28108449 - 28108407
Alignment:
Q  183 caattcaatatattccactttacatttatgatagtggataatg 225  Q
    ||||||||||||||||||||||||| |||||||||||| ||||    
T  28108449 caattcaatatattccactttacatgtatgatagtggagaatg 28108407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 3100430 - 3100475
Alignment:
Q  180 ttccaattcaatatattccactttacatttatgatagtggataatg 225  Q
    |||||||| ||||||||||||||| |||||||||||||||| ||||    
T  3100430 ttccaatttaatatattccactttgcatttatgatagtggagaatg 3100475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 24775881 - 24775845
Alignment:
Q  184 aattcaatatattccactttacatttatgatagtgga 220  Q
    ||||||||||||| |||||||||||||||||||||||    
T  24775881 aattcaatatatttcactttacatttatgatagtgga 24775845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 215
Target Start/End: Complemental strand, 1908571 - 1908536
Alignment:
Q  180 ttccaattcaatatattccactttacatttatgata 215  Q
    |||||||||||||||||| |||||||||||||||||    
T  1908571 ttccaattcaatatattctactttacatttatgata 1908536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 225
Target Start/End: Complemental strand, 28925923 - 28925880
Alignment:
Q  182 ccaattcaatatattccactttacatttatgatagtggataatg 225  Q
    ||||||||||||||| ||||||||| ||||||||||||| ||||    
T  28925923 ccaattcaatatatttcactttacaattatgatagtggagaatg 28925880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 218
Target Start/End: Original strand, 41436112 - 41436147
Alignment:
Q  183 caattcaatatattccactttacatttatgatagtg 218  Q
    ||||||||||||||||||||| ||||||||||||||    
T  41436112 caattcaatatattccactttgcatttatgatagtg 41436147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 225
Target Start/End: Complemental strand, 43077805 - 43077758
Alignment:
Q  178 atttccaattcaatatattccactttacatttatgatagtggataatg 225  Q
    |||| |||||||||||||| |||||||||||||||| |||||| ||||    
T  43077805 attttcaattcaatatatttcactttacatttatgacagtggaaaatg 43077758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 214
Target Start/End: Complemental strand, 6685740 - 6685706
Alignment:
Q  180 ttccaattcaatatattccactttacatttatgat 214  Q
    |||||||||||||||||| ||||||||||||||||    
T  6685740 ttccaattcaatatattctactttacatttatgat 6685706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 225
Target Start/End: Original strand, 23684992 - 23685034
Alignment:
Q  183 caattcaatatattccactttacatttatgatagtggataatg 225  Q
    |||||||||||||| |||||| |||||||||||||||| ||||    
T  23684992 caattcaatatatttcactttgcatttatgatagtggagaatg 23685034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 225
Target Start/End: Original strand, 39095664 - 39095706
Alignment:
Q  183 caattcaatatattccactttacatttatgatagtggataatg 225  Q
    ||||||||||||||||||||| ||||||||||| |||| ||||    
T  39095664 caattcaatatattccactttgcatttatgataatggagaatg 39095706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 215
Target Start/End: Original strand, 9724910 - 9724943
Alignment:
Q  182 ccaattcaatatattccactttacatttatgata 215  Q
    |||||||||||||||| |||||||||||||||||    
T  9724910 ccaattcaatatattctactttacatttatgata 9724943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 216
Target Start/End: Complemental strand, 13538343 - 13538310
Alignment:
Q  183 caattcaatatattccactttacatttatgatag 216  Q
    ||||||||||| ||||||||||||||||||||||    
T  13538343 caattcaatatcttccactttacatttatgatag 13538310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 220
Target Start/End: Original strand, 28301467 - 28301504
Alignment:
Q  183 caattcaatatattccactttacatttatgatagtgga 220  Q
    |||||||||||||| |||||| ||||||||||||||||    
T  28301467 caattcaatatatttcactttgcatttatgatagtgga 28301504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 28572238 - 28572283
Alignment:
Q  180 ttccaattcaatatattccactttacatttatgatagtggataatg 225  Q
    ||||||||||||||||| || ||| |||||||||||||||| ||||    
T  28572238 ttccaattcaatatatttcattttgcatttatgatagtggagaatg 28572283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 220
Target Start/End: Complemental strand, 37247958 - 37247921
Alignment:
Q  183 caattcaatatattccactttacatttatgatagtgga 220  Q
    |||||||||||||| |||||| ||||||||||||||||    
T  37247958 caattcaatatatttcactttgcatttatgatagtgga 37247921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Original strand, 4794606 - 4794638
Alignment:
Q  183 caattcaatatattccactttacatttatgata 215  Q
    ||||||||||||||||||||| |||||||||||    
T  4794606 caattcaatatattccactttgcatttatgata 4794638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 211
Target Start/End: Original strand, 7213508 - 7213536
Alignment:
Q  183 caattcaatatattccactttacatttat 211  Q
    |||||||||||||||||||||||||||||    
T  7213508 caattcaatatattccactttacatttat 7213536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 14484 - 14531
Alignment:
Q  178 atttccaattcaatatattccactttacatttatgatagtggataatg 225  Q
    |||| ||||||||||||||||||||||||||||||| |||||| ||||    
T  14484 attttcaattcaatatattccactttacatttatgacagtggagaatg 14531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 225
Target Start/End: Complemental strand, 32827383 - 32827336
Alignment:
Q  178 atttccaattcaatatattccactttacatttatgatagtggataatg 225  Q
    ||||| ||||||||||||| ||||||||||||||||||||||| ||||    
T  32827383 atttctaattcaatatatttcactttacatttatgatagtggagaatg 32827336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 225
Target Start/End: Original strand, 33994693 - 33994732
Alignment:
Q  186 ttcaatatattccactttacatttatgatagtggataatg 225  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  33994693 ttcaatatattccactttacatttatgatagtggagaatg 33994732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 45392118 - 45392165
Alignment:
Q  178 atttccaattcaatatattccactttacatttatgatagtggataatg 225  Q
    ||||||||||||||||||| ||||||||||||| |||||| |||||||    
T  45392118 atttccaattcaatatatttcactttacatttacgatagtagataatg 45392165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 48744287 - 48744334
Alignment:
Q  178 atttccaattcaatatattccactttacatttatgatagtggataatg 225  Q
    |||| |||||||||||||| ||||||||||||||||||||||| ||||    
T  48744287 attttcaattcaatatatttcactttacatttatgatagtggagaatg 48744334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 54782991 - 54783038
Alignment:
Q  178 atttccaattcaatatattccactttacatttatgatagtggataatg 225  Q
    ||||||||||||||||||| ||||||||||||||||||| | ||||||    
T  54782991 atttccaattcaatatatttcactttacatttatgatagcgcataatg 54783038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 183 - 225
Target Start/End: Original strand, 10855027 - 10855069
Alignment:
Q  183 caattcaatatattccactttacatttatgatagtggataatg 225  Q
    ||||||||||||||||||||| ||||||||| |||||||||||    
T  10855027 caattcaatatattccactttgcatttatgagagtggataatg 10855069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 15280637 - 15280675
Alignment:
Q  182 ccaattcaatatattccactttacatttatgatagtgga 220  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  15280637 ccaattcaatatattccactttccatttatgatagtgga 15280675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 178 - 220
Target Start/End: Complemental strand, 37041952 - 37041910
Alignment:
Q  178 atttccaattcaatatattccactttacatttatgatagtgga 220  Q
    ||||||||||||||||||| ||||||| |||||||||||||||    
T  37041952 atttccaattcaatatatttcactttatatttatgatagtgga 37041910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 183 - 225
Target Start/End: Complemental strand, 53876510 - 53876468
Alignment:
Q  183 caattcaatatattccactttacatttatgatagtggataatg 225  Q
    |||||||||||||| ||||||||||||||||||||||| ||||    
T  53876510 caattcaatatatttcactttacatttatgatagtggaaaatg 53876468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 183 - 225
Target Start/End: Complemental strand, 54458383 - 54458341
Alignment:
Q  183 caattcaatatattccactttacatttatgatagtggataatg 225  Q
    ||||||||||||||||||||||||||||||||| |||| ||||    
T  54458383 caattcaatatattccactttacatttatgataatggagaatg 54458341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 178 - 220
Target Start/End: Original strand, 54493936 - 54493978
Alignment:
Q  178 atttccaattcaatatattccactttacatttatgatagtgga 220  Q
    |||||||||| |||||||| |||||||||||||||||||||||    
T  54493936 atttccaatttaatatatttcactttacatttatgatagtgga 54493978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 180 - 225
Target Start/End: Complemental strand, 43639593 - 43639548
Alignment:
Q  180 ttccaattcaatatattccactttacatttatgatagtggataatg 225  Q
    ||||||||||||||||| |||||| |||||||||||||||| ||||    
T  43639593 ttccaattcaatatatttcactttgcatttatgatagtggaaaatg 43639548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 180 - 225
Target Start/End: Complemental strand, 54122301 - 54122256
Alignment:
Q  180 ttccaattcaatatattccactttacatttatgatagtggataatg 225  Q
    ||||||||||||||||| |||||| |||||||||||||||| ||||    
T  54122301 ttccaattcaatatatttcactttgcatttatgatagtggagaatg 54122256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 215
Target Start/End: Complemental strand, 30261574 - 30261543
Alignment:
Q  184 aattcaatatattccactttacatttatgata 215  Q
    ||||||||||||||||||||||||||||||||    
T  30261574 aattcaatatattccactttacatttatgata 30261543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 218
Target Start/End: Original strand, 49003303 - 49003338
Alignment:
Q  183 caattcaatatattccactttacatttatgatagtg 218  Q
    |||||||||||||||||| |||||||||||||||||    
T  49003303 caattcaatatattccaccttacatttatgatagtg 49003338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 218
Target Start/End: Complemental strand, 21296580 - 21296542
Alignment:
Q  180 ttccaattcaatatattccactttacatttatgatagtg 218  Q
    |||||||||||||||||| ||||| ||||||||||||||    
T  21296580 ttccaattcaatatattctactttgcatttatgatagtg 21296542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 225
Target Start/End: Complemental strand, 22202463 - 22202421
Alignment:
Q  183 caattcaatatattccactttacatttatgatagtggataatg 225  Q
    ||||| ||||||||| ||||| |||||||||||||||||||||    
T  22202463 caatttaatatattcaactttgcatttatgatagtggataatg 22202421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 220
Target Start/End: Complemental strand, 26134778 - 26134740
Alignment:
Q  182 ccaattcaatatattccactttacatttatgatagtgga 220  Q
    ||||||||||||||| |||||| ||||||||||||||||    
T  26134778 ccaattcaatatatttcactttgcatttatgatagtgga 26134740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 220
Target Start/End: Complemental strand, 46786056 - 46786018
Alignment:
Q  182 ccaattcaatatattccactttacatttatgatagtgga 220  Q
    ||||||||||||||| |||||| ||||||||||||||||    
T  46786056 ccaattcaatatatttcactttgcatttatgatagtgga 46786018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 215
Target Start/End: Complemental strand, 1334856 - 1334823
Alignment:
Q  182 ccaattcaatatattccactttacatttatgata 215  Q
    |||||||||||||||| |||||||||||||||||    
T  1334856 ccaattcaatatattctactttacatttatgata 1334823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 9017831 - 9017876
Alignment:
Q  180 ttccaattcaatatattccactttacatttatgatagtggataatg 225  Q
    ||||||||||||||||| |||||| ||||||| |||||||| ||||    
T  9017831 ttccaattcaatatatttcactttgcatttataatagtggagaatg 9017876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 211
Target Start/End: Original strand, 41031600 - 41031633
Alignment:
Q  178 atttccaattcaatatattccactttacatttat 211  Q
    ||||||||||||||||||| ||||||||||||||    
T  41031600 atttccaattcaatatatttcactttacatttat 41031633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 216
Target Start/End: Original strand, 52325210 - 52325243
Alignment:
Q  183 caattcaatatattccactttacatttatgatag 216  Q
    ||||||||||||||||||||| ||||||||||||    
T  52325210 caattcaatatattccactttgcatttatgatag 52325243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 225
Target Start/End: Complemental strand, 17777066 - 17777026
Alignment:
Q  185 attcaatatattccactttacatttatgatagtggataatg 225  Q
    ||||||||||||||||||| |||||||| ||||||| ||||    
T  17777066 attcaatatattccactttgcatttatggtagtggagaatg 17777026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 225
Target Start/End: Complemental strand, 19078367 - 19078327
Alignment:
Q  185 attcaatatattccactttacatttatgatagtggataatg 225  Q
    ||||||||||||||||||| |||||||| ||||||| ||||    
T  19078367 attcaatatattccactttgcatttatggtagtggagaatg 19078327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Original strand, 41287295 - 41287327
Alignment:
Q  183 caattcaatatattccactttacatttatgata 215  Q
    ||||||||||||||| |||||||||||||||||    
T  41287295 caattcaatatattctactttacatttatgata 41287327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 183 - 220
Target Start/End: Original strand, 26646 - 26683
Alignment:
Q  183 caattcaatatattccactttacatttatgatagtgga 220  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  26646 caattcaatatattccactttgcatttatgatagtgga 26683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0221 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 225
Target Start/End: Original strand, 8920 - 8962
Alignment:
Q  183 caattcaatatattccactttacatttatgatagtggataatg 225  Q
    ||||||||||||||||||||| ||||||| |||||||| ||||    
T  8920 caattcaatatattccactttgcatttataatagtggagaatg 8962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 225
Target Start/End: Original strand, 98858 - 98900
Alignment:
Q  183 caattcaatatattccactttacatttatgatagtggataatg 225  Q
    |||||||||||||||||||||| |||||| || ||||||||||    
T  98858 caattcaatatattccactttatatttattatggtggataatg 98900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 229853 - 229898
Alignment:
Q  180 ttccaattcaatatattccactttacatttatgatagtggataatg 225  Q
    |||||||||||||||| ||||||| ||||||||||| |||| ||||    
T  229853 ttccaattcaatatataccactttgcatttatgataatggagaatg 229898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 215
Target Start/End: Complemental strand, 352536 - 352503
Alignment:
Q  182 ccaattcaatatattccactttacatttatgata 215  Q
    |||||||||||||||| |||||||||||||||||    
T  352536 ccaattcaatatattctactttacatttatgata 352503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Original strand, 5851 - 5883
Alignment:
Q  183 caattcaatatattccactttacatttatgata 215  Q
    ||||||||||||||| |||||||||||||||||    
T  5851 caattcaatatattctactttacatttatgata 5883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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