View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10865A_low_380 (Length: 229)

Name: NF10865A_low_380
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10865A_low_380
NF10865A_low_380
[»] chr2 (9 HSPs)
chr2 (3-224)||(41569122-41569330)
chr2 (3-49)||(670360-670406)
chr2 (3-49)||(17779519-17779565)
chr2 (3-45)||(28679453-28679495)
chr2 (3-49)||(29051543-29051589)
chr2 (3-49)||(31389684-31389730)
chr2 (2-49)||(7552693-7552740)
chr2 (3-46)||(18177077-18177120)
chr2 (3-49)||(433987-434033)
[»] chr8 (19 HSPs)
chr8 (3-49)||(13971257-13971303)
chr8 (3-49)||(1633778-1633824)
chr8 (3-49)||(32843830-32843876)
chr8 (3-49)||(36110275-36110321)
chr8 (3-52)||(1871500-1871549)
chr8 (3-50)||(7955894-7955941)
chr8 (3-49)||(16966922-16966968)
chr8 (3-49)||(34591401-34591447)
chr8 (3-52)||(7586048-7586097)
chr8 (8-49)||(30135902-30135943)
chr8 (3-48)||(37783860-37783905)
chr8 (2-46)||(29867191-29867235)
chr8 (2-49)||(33589119-33589166)
chr8 (2-52)||(7592986-7593036)
chr8 (3-49)||(11017942-11017988)
chr8 (3-45)||(18651497-18651539)
chr8 (3-49)||(32847574-32847620)
chr8 (2-43)||(11657895-11657936)
chr8 (11-51)||(6968119-6968159)
[»] chr4 (27 HSPs)
chr4 (3-52)||(14451530-14451579)
chr4 (3-51)||(53152207-53152255)
chr4 (2-49)||(37066123-37066170)
chr4 (3-49)||(5932046-5932092)
chr4 (3-49)||(9118752-9118798)
chr4 (2-52)||(17476012-17476062)
chr4 (3-49)||(41486031-41486077)
chr4 (3-49)||(47965874-47965920)
chr4 (3-50)||(30079983-30080030)
chr4 (3-50)||(33899213-33899260)
chr4 (3-50)||(50272960-50273007)
chr4 (3-49)||(12112764-12112810)
chr4 (3-49)||(23822136-23822182)
chr4 (3-49)||(51194406-51194452)
chr4 (3-49)||(54669472-54669518)
chr4 (2-51)||(21260434-21260483)
chr4 (1-50)||(43326230-43326279)
chr4 (3-51)||(51746357-51746405)
chr4 (2-49)||(2256219-2256266)
chr4 (3-46)||(25317957-25318000)
chr4 (3-46)||(26206868-26206911)
chr4 (2-49)||(42959408-42959455)
chr4 (3-45)||(624203-624245)
chr4 (3-45)||(13389342-13389384)
chr4 (3-45)||(31076190-31076232)
chr4 (1-46)||(41082452-41082497)
chr4 (1-49)||(6141666-6141714)
[»] chr3 (19 HSPs)
chr3 (3-55)||(54195477-54195529)
chr3 (3-54)||(36121958-36122009)
chr3 (3-49)||(10206861-10206907)
chr3 (3-49)||(39670985-39671031)
chr3 (3-49)||(44677372-44677418)
chr3 (3-51)||(37508384-37508432)
chr3 (2-49)||(35201428-35201475)
chr3 (2-52)||(22371327-22371377)
chr3 (3-49)||(54773641-54773687)
chr3 (3-52)||(51973253-51973302)
chr3 (3-51)||(26996452-26996500)
chr3 (1-49)||(33376000-33376048)
chr3 (3-46)||(28419105-28419148)
chr3 (3-46)||(32767813-32767856)
chr3 (2-45)||(55013138-55013181)
chr3 (3-49)||(11633750-11633796)
chr3 (3-49)||(43905110-43905156)
chr3 (3-52)||(54028079-54028128)
chr3 (2-50)||(390945-390993)
[»] chr1 (22 HSPs)
chr1 (3-51)||(20565004-20565052)
chr1 (3-49)||(26837589-26837635)
chr1 (3-52)||(3603248-3603297)
chr1 (3-51)||(26585765-26585813)
chr1 (2-45)||(36494587-36494630)
chr1 (3-50)||(51191925-51191972)
chr1 (3-49)||(1852839-1852885)
chr1 (3-49)||(7128255-7128301)
chr1 (3-49)||(9008362-9008408)
chr1 (3-49)||(21340658-21340704)
chr1 (3-52)||(37178841-37178890)
chr1 (3-43)||(756993-757033)
chr1 (1-49)||(16987072-16987120)
chr1 (3-46)||(1790645-1790688)
chr1 (3-46)||(33024462-33024505)
chr1 (3-46)||(38303579-38303622)
chr1 (3-49)||(4514342-4514388)
chr1 (3-49)||(8411606-8411652)
chr1 (3-57)||(47214344-47214398)
chr1 (3-45)||(51286260-51286302)
chr1 (2-43)||(3024644-3024685)
chr1 (2-50)||(36779156-36779204)
[»] chr7 (13 HSPs)
chr7 (1-52)||(29162861-29162912)
chr7 (3-49)||(32815305-32815351)
chr7 (3-57)||(47078132-47078186)
chr7 (3-50)||(23048287-23048334)
chr7 (3-50)||(39231615-39231662)
chr7 (3-49)||(37808652-37808698)
chr7 (3-46)||(13163056-13163099)
chr7 (3-49)||(19785967-19786013)
chr7 (3-49)||(26041208-26041254)
chr7 (3-45)||(29002743-29002785)
chr7 (3-49)||(41026182-41026228)
chr7 (3-49)||(41666810-41666856)
chr7 (3-52)||(41402645-41402694)
[»] chr5 (13 HSPs)
chr5 (2-49)||(35098893-35098940)
chr5 (2-46)||(8267711-8267755)
chr5 (2-49)||(16437452-16437499)
chr5 (4-51)||(21064112-21064159)
chr5 (3-49)||(4430824-4430870)
chr5 (5-45)||(17402814-17402854)
chr5 (3-50)||(39088756-39088803)
chr5 (3-45)||(2224928-2224970)
chr5 (3-49)||(2688874-2688920)
chr5 (1-51)||(23126227-23126277)
chr5 (3-45)||(42267482-42267524)
chr5 (3-51)||(5042385-5042433)
chr5 (3-51)||(33620745-33620793)
[»] scaffold0471 (1 HSPs)
scaffold0471 (3-49)||(144-190)
[»] chr6 (9 HSPs)
chr6 (3-49)||(5327479-5327525)
chr6 (2-48)||(14986633-14986679)
chr6 (2-46)||(34504156-34504200)
chr6 (6-49)||(3610849-3610892)
chr6 (3-45)||(2075343-2075385)
chr6 (3-45)||(22341067-22341109)
chr6 (2-45)||(30036686-30036729)
chr6 (4-49)||(11547417-11547462)
chr6 (1-45)||(2777209-2777253)
[»] scaffold0449 (1 HSPs)
scaffold0449 (3-51)||(9340-9388)
[»] scaffold0687 (1 HSPs)
scaffold0687 (2-52)||(2334-2384)


Alignment Details
Target: chr2 (Bit Score: 128; Significance: 3e-66; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 3 - 224
Target Start/End: Complemental strand, 41569330 - 41569122
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacactcctcattcaattcaatatctactactcaaccatcgaataatcgtgtcaaagaagtaa 102  Q
    |||||||||||||| | | |||||||||| ||||||||| |||| ||      ||||||||||||||||||| |||   |||||||||||||||||||||    
T  41569330 ttgtcaaataagttatcatcaaattggttgttcaaataatactcatc-----tttcaatatctactactcaatcat---ataatcgtgtcaaagaagtaa 41569239  T
Q  103 tcttaaatcttttgctcatttgacaacactttgcatatggactcaataaatcattatcataaattacaacatatattattggctattgctgcactgcaat 202  Q
    |||||||||||||||||||||||||||     |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  41569238 tcttaaatcttttgctcatttgacaac-----gcatatggactcaaaaaatcattatcataaactacaacatatattattggctattgctgcactgcaat 41569144  T
Q  203 aaacaaaaaacttcatccttgt 224  Q
    ||||||||||||||||||||||    
T  41569143 aaacaaaaaacttcatccttgt 41569122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 670406 - 670360
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacactcctc 49  Q
    |||||||||||||||| | |||||||||| |||||||||||||||||    
T  670406 ttgtcaaataagttgtcatcaaattggttgttcaaataacactcctc 670360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 17779519 - 17779565
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacactcctc 49  Q
    |||||||||||||||| |||||||||||| |||||||||||| ||||    
T  17779519 ttgtcaaataagttgtcaccaaattggttgttcaaataacacccctc 17779565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 28679453 - 28679495
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacact 45  Q
    |||||||||||||||| |||||||||||| |||||||||||||    
T  28679453 ttgtcaaataagttgtgaccaaattggttgttcaaataacact 28679495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 29051589 - 29051543
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacactcctc 49  Q
    |||||||||||||| | |||||||||||| |||||||||||||||||    
T  29051589 ttgtcaaataagttatcaccaaattggttgttcaaataacactcctc 29051543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 31389684 - 31389730
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacactcctc 49  Q
    |||||||||||||||| | |||||||||| |||||||||||||||||    
T  31389684 ttgtcaaataagttgtcatcaaattggttgttcaaataacactcctc 31389730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 49
Target Start/End: Original strand, 7552693 - 7552740
Alignment:
Q  2 attgtcaaataagttgttaccaaattggtttttcaaataacactcctc 49  Q
    |||||||||||| |||| ||||||||| || |||||||||||||||||    
T  7552693 attgtcaaataaattgtcaccaaattgattgttcaaataacactcctc 7552740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 18177077 - 18177120
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacactc 46  Q
    |||||||||||||||| ||||||||| || ||||||||||||||    
T  18177077 ttgtcaaataagttgtcaccaaattgattgttcaaataacactc 18177120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 433987 - 434033
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacactcctc 49  Q
    |||||||||||||||| || |||||| || |||||||||||||||||    
T  433987 ttgtcaaataagttgtcacaaaattgattgttcaaataacactcctc 434033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 13971257 - 13971303
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacactcctc 49  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||    
T  13971257 ttgtcaaataagttgttaccaaattggttgttcaaataacactcctc 13971303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 1633824 - 1633778
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacactcctc 49  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||    
T  1633824 ttgtcaaataagttgtcaccaaattggttgttcaaataacactcctc 1633778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 32843876 - 32843830
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacactcctc 49  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||    
T  32843876 ttgtcaaataagttgtcaccaaattggttgttcaaataacactcctc 32843830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 36110275 - 36110321
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacactcctc 49  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||    
T  36110275 ttgtcaaataagttgtcaccaaattggttgttcaaataacactcctc 36110321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 1871549 - 1871500
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacactcctcatt 52  Q
    |||||||||||||||| | |||||||||| ||||||||||||||||||||    
T  1871549 ttgtcaaataagttgtaatcaaattggttgttcaaataacactcctcatt 1871500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 50
Target Start/End: Complemental strand, 7955941 - 7955894
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacactcctca 50  Q
    |||||||||||||||| ||||||||| || ||||||||||||||||||    
T  7955941 ttgtcaaataagttgtcaccaaattgattgttcaaataacactcctca 7955894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 16966922 - 16966968
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacactcctc 49  Q
    |||||||||||||| | |||||||||||| |||||||||||||||||    
T  16966922 ttgtcaaataagttttcaccaaattggttgttcaaataacactcctc 16966968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 34591401 - 34591447
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacactcctc 49  Q
    |||||||||||||||| ||||||||| || |||||||||||||||||    
T  34591401 ttgtcaaataagttgtcaccaaattgattgttcaaataacactcctc 34591447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 7586097 - 7586048
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacactcctcatt 52  Q
    |||||||||||||||| |  ||||||||| ||||||||||||||||||||    
T  7586097 ttgtcaaataagttgtcatgaaattggttgttcaaataacactcctcatt 7586048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 30135943 - 30135902
Alignment:
Q  8 aaataagttgttaccaaattggtttttcaaataacactcctc 49  Q
    ||||||||||| |||||||||||| |||||||||||||||||    
T  30135943 aaataagttgtcaccaaattggttgttcaaataacactcctc 30135902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 37783905 - 37783860
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacactcct 48  Q
    |||||||||||||||| ||||||||||||  |||||||||||||||    
T  37783905 ttgtcaaataagttgtcaccaaattggttgatcaaataacactcct 37783860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 29867235 - 29867191
Alignment:
Q  2 attgtcaaataagttgttaccaaattggtttttcaaataacactc 46  Q
    |||||||||||||||||||||||||| ||| |||| |||||||||    
T  29867235 attgtcaaataagttgttaccaaattagttgttcatataacactc 29867191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 49
Target Start/End: Complemental strand, 33589166 - 33589119
Alignment:
Q  2 attgtcaaataagttgttaccaaattggtttttcaaataacactcctc 49  Q
    ||||||||||||||||| ||||||||| || ||||||||||| |||||    
T  33589166 attgtcaaataagttgtcaccaaattgattgttcaaataacaatcctc 33589119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 7592986 - 7593036
Alignment:
Q  2 attgtcaaataagttgttaccaaattggtttttcaaataacactcctcatt 52  Q
    ||||||||||||||||| |||| |||| || |||||||||||||| |||||    
T  7592986 attgtcaaataagttgtcaccatattgattgttcaaataacactcatcatt 7593036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 11017942 - 11017988
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacactcctc 49  Q
    |||||||||||||||| ||||||||  || |||||||||||||||||    
T  11017942 ttgtcaaataagttgtcaccaaattaattgttcaaataacactcctc 11017988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 18651497 - 18651539
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacact 45  Q
    ||||||||||||||||||| ||||||||| || ||||||||||    
T  18651497 ttgtcaaataagttgttactaaattggttgtttaaataacact 18651539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 32847620 - 32847574
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacactcctc 49  Q
    |||||||||||||| | ||||||||| || |||||||||||||||||    
T  32847620 ttgtcaaataagttatcaccaaattgattgttcaaataacactcctc 32847574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 43
Target Start/End: Complemental strand, 11657936 - 11657895
Alignment:
Q  2 attgtcaaataagttgttaccaaattggtttttcaaataaca 43  Q
    ||||||||||||||||| | |||||||||| |||||||||||    
T  11657936 attgtcaaataagttgtcagcaaattggttgttcaaataaca 11657895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 6968159 - 6968119
Alignment:
Q  11 taagttgttaccaaattggtttttcaaataacactcctcat 51  Q
    |||||||| ||||||||| || |||||||||||||||||||    
T  6968159 taagttgtcaccaaattgattgttcaaataacactcctcat 6968119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 14451530 - 14451579
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacactcctcatt 52  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  14451530 ttgtcaaataagttgtcaccaaattggttgttcaaataacactcctcatt 14451579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 53152255 - 53152207
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacactcctcat 51  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||||    
T  53152255 ttgtcaaataagttgtcaccaaattggttgttcaaataacactcctcat 53152207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 2 - 49
Target Start/End: Original strand, 37066123 - 37066170
Alignment:
Q  2 attgtcaaataagttgttaccaaattggtttttcaaataacactcctc 49  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||||    
T  37066123 attgtcaaataagttgtcaccaaattggttgttcaaataacactcctc 37066170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 5932092 - 5932046
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacactcctc 49  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||    
T  5932092 ttgtcaaataagttgtcaccaaattggttgttcaaataacactcctc 5932046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 9118798 - 9118752
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacactcctc 49  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||    
T  9118798 ttgtcaaataagttgtcaccaaattggttgttcaaataacactcctc 9118752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 17476012 - 17476062
Alignment:
Q  2 attgtcaaataagttgttaccaaattggtttttcaaataacactcctcatt 52  Q
    ||||||||||||||||| ||||||||| || ||||||||||||||||||||    
T  17476012 attgtcaaataagttgtcaccaaattgattgttcaaataacactcctcatt 17476062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 41486077 - 41486031
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacactcctc 49  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||    
T  41486077 ttgtcaaataagttgtcaccaaattggttgttcaaataacactcctc 41486031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 47965874 - 47965920
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacactcctc 49  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||    
T  47965874 ttgtcaaataagttgtcaccaaattggttgttcaaataacactcctc 47965920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 30079983 - 30080030
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacactcctca 50  Q
    |||||||||||||| | |||||||||||| ||||||||||||||||||    
T  30079983 ttgtcaaataagttttcaccaaattggttgttcaaataacactcctca 30080030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 50
Target Start/End: Complemental strand, 33899260 - 33899213
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacactcctca 50  Q
    |||||||||||||||| |||||||||||| ||||||||||||| ||||    
T  33899260 ttgtcaaataagttgtcaccaaattggttgttcaaataacacttctca 33899213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 50
Target Start/End: Complemental strand, 50273007 - 50272960
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacactcctca 50  Q
    |||||||||||||||| |||||||||||| ||||||||| ||||||||    
T  50273007 ttgtcaaataagttgtcaccaaattggttgttcaaataatactcctca 50272960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 12112764 - 12112810
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacactcctc 49  Q
    |||||||||||||||| |||||||||||| |||||||| ||||||||    
T  12112764 ttgtcaaataagttgtcaccaaattggttgttcaaatatcactcctc 12112810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 23822182 - 23822136
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacactcctc 49  Q
    |||||||||||||||| |||||||||||| |||||||||||| ||||    
T  23822182 ttgtcaaataagttgtcaccaaattggttgttcaaataacacccctc 23822136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 51194406 - 51194452
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacactcctc 49  Q
    |||||||||||||||| | |||||||||| |||||||||||||||||    
T  51194406 ttgtcaaataagttgtcatcaaattggttgttcaaataacactcctc 51194452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 54669518 - 54669472
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacactcctc 49  Q
    |||||||||||||||| | |||||||||| |||||||||||||||||    
T  54669518 ttgtcaaataagttgtcatcaaattggttgttcaaataacactcctc 54669472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 21260434 - 21260483
Alignment:
Q  2 attgtcaaataagttgttaccaaattggtttttcaaataacactcctcat 51  Q
    |||||||||||| |||| |||||||||||| |||||| ||||||||||||    
T  21260434 attgtcaaataaattgtcaccaaattggttgttcaaaaaacactcctcat 21260483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 43326279 - 43326230
Alignment:
Q  1 aattgtcaaataagttgttaccaaattggtttttcaaataacactcctca 50  Q
    |||||||||||||||| | ||||||||| || ||||||||||||||||||    
T  43326279 aattgtcaaataagttatcaccaaattgtttattcaaataacactcctca 43326230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 51746357 - 51746405
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacactcctcat 51  Q
    |||||||||||||||| ||||||||  || |||||||||||||||||||    
T  51746357 ttgtcaaataagttgtcaccaaattaattgttcaaataacactcctcat 51746405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 49
Target Start/End: Complemental strand, 2256266 - 2256219
Alignment:
Q  2 attgtcaaataagttgttaccaaattggtttttcaaataacactcctc 49  Q
    ||||| ||||||||||| |||||||| ||| |||||||||||||||||    
T  2256266 attgtaaaataagttgtcaccaaattagttgttcaaataacactcctc 2256219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 25318000 - 25317957
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacactc 46  Q
    |||||||||||||| | |||||||||||| ||||||||||||||    
T  25318000 ttgtcaaataagttatcaccaaattggttgttcaaataacactc 25317957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 26206911 - 26206868
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacactc 46  Q
    |||||||||||||||| |||||||| ||| ||||||||||||||    
T  26206911 ttgtcaaataagttgtcaccaaattagttgttcaaataacactc 26206868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 49
Target Start/End: Original strand, 42959408 - 42959455
Alignment:
Q  2 attgtcaaataagttgttaccaaattggtttttcaaataacactcctc 49  Q
    ||||||||||||||| | || ||||||||| |||||||||||||||||    
T  42959408 attgtcaaataagttatcactaaattggttgttcaaataacactcctc 42959455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 624245 - 624203
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacact 45  Q
    |||||||||||||||| |||||||| ||| |||||||||||||    
T  624245 ttgtcaaataagttgtcaccaaattagttgttcaaataacact 624203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 13389384 - 13389342
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacact 45  Q
    |||||||||||||||| ||||||||| || |||||||||||||    
T  13389384 ttgtcaaataagttgtgaccaaattgattgttcaaataacact 13389342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 31076190 - 31076232
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacact 45  Q
    |||||||||||||||| |||||||||||| || ||||||||||    
T  31076190 ttgtcaaataagttgtcaccaaattggttgtttaaataacact 31076232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 41082452 - 41082497
Alignment:
Q  1 aattgtcaaataagttgttaccaaattggtttttcaaataacactc 46  Q
    |||||||||||||||||  | |||||||||| ||||||||||||||    
T  41082452 aattgtcaaataagttgccatcaaattggttgttcaaataacactc 41082497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 6141714 - 6141666
Alignment:
Q  1 aattgtcaaataagttgttaccaaattggtttttcaaataacactcctc 49  Q
    ||||||||||||| | || || ||||||||| |||||||||||||||||    
T  6141714 aattgtcaaataaatagtcactaaattggttgttcaaataacactcctc 6141666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 54195477 - 54195529
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacactcctcattcaa 55  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||| ||||    
T  54195477 ttgtcaaataagttgtcaccaaattggttgttcaaataacactcctcaatcaa 54195529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 36121958 - 36122009
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacactcctcattca 54  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||| ||||    
T  36121958 ttgtcaaataagttgtcaccaaattggttgttcaaataacactcctctttca 36122009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 10206907 - 10206861
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacactcctc 49  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||    
T  10206907 ttgtcaaataagttgtcaccaaattggttgttcaaataacactcctc 10206861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 39671031 - 39670985
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacactcctc 49  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||    
T  39671031 ttgtcaaataagttgtcaccaaattggttgttcaaataacactcctc 39670985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 44677418 - 44677372
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacactcctc 49  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||    
T  44677418 ttgtcaaataagttgtcaccaaattggttgttcaaataacactcctc 44677372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 37508432 - 37508384
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacactcctcat 51  Q
    |||||||||||||||| | |||||||||| |||||||||||||||||||    
T  37508432 ttgtcaaataagttgtcatcaaattggttgttcaaataacactcctcat 37508384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 49
Target Start/End: Complemental strand, 35201475 - 35201428
Alignment:
Q  2 attgtcaaataagttgttaccaaattggtttttcaaataacactcctc 49  Q
    ||||||||||||||||| ||||||||| || |||||||||||||||||    
T  35201475 attgtcaaataagttgtcaccaaattgattgttcaaataacactcctc 35201428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 22371327 - 22371377
Alignment:
Q  2 attgtcaaataagttgttaccaaattggtttttcaaataacactcctcatt 52  Q
    |||||||||||| |||| |||||||| ||| ||||||||||||||||||||    
T  22371327 attgtcaaataaattgtcaccaaattagttgttcaaataacactcctcatt 22371377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 54773687 - 54773641
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacactcctc 49  Q
    |||||||||||||||| |||||||||||| |||| ||||||||||||    
T  54773687 ttgtcaaataagttgtcaccaaattggttattcatataacactcctc 54773641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 51973302 - 51973253
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacactcctcatt 52  Q
    ||||||||||| |||| |||||||| ||| ||||||||||||||||||||    
T  51973302 ttgtcaaataaattgtcaccaaattagttgttcaaataacactcctcatt 51973253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 26996452 - 26996500
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacactcctcat 51  Q
    ||||||||||| |||| |||||||| ||| |||||||||||||||||||    
T  26996452 ttgtcaaataaattgtcaccaaatttgttgttcaaataacactcctcat 26996500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 33376000 - 33376048
Alignment:
Q  1 aattgtcaaataagttgttaccaaattggtttttcaaataacactcctc 49  Q
    |||| ||||||||||||| ||||||||| || |||||||||||||||||    
T  33376000 aattttcaaataagttgtcaccaaattgattgttcaaataacactcctc 33376048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 28419148 - 28419105
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacactc 46  Q
    ||||||| |||||||| |||||||||||| ||||||||||||||    
T  28419148 ttgtcaagtaagttgtcaccaaattggttgttcaaataacactc 28419105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 32767813 - 32767856
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacactc 46  Q
    |||||||||||||||| ||||||||| || ||||||||||||||    
T  32767813 ttgtcaaataagttgtcaccaaattgattgttcaaataacactc 32767856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 55013138 - 55013181
Alignment:
Q  2 attgtcaaataagttgttaccaaattggtttttcaaataacact 45  Q
    |||||||||||| |||| |||||||||||| |||||||||||||    
T  55013138 attgtcaaataaattgtcaccaaattggttgttcaaataacact 55013181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 11633750 - 11633796
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacactcctc 49  Q
    ||||||||||| || | |||||||||||| |||||||||||||||||    
T  11633750 ttgtcaaataaattatcaccaaattggttgttcaaataacactcctc 11633796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 43905110 - 43905156
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacactcctc 49  Q
    |||||||||||||| | || ||||||||| |||||||||||||||||    
T  43905110 ttgtcaaataagttttcactaaattggttgttcaaataacactcctc 43905156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 54028079 - 54028128
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacactcctcatt 52  Q
    ||||| |||||||||| || |||||| || ||||||||||||||||||||    
T  54028079 ttgtccaataagttgtcactaaattgattcttcaaataacactcctcatt 54028128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 390945 - 390993
Alignment:
Q  2 attgtcaaataagttgttaccaaattggtttttcaaataacactcctca 50  Q
    ||||||||||||||||| | ||| |||||| ||||||||||| ||||||    
T  390945 attgtcaaataagttgtcatcaacttggttgttcaaataacattcctca 390993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 20565052 - 20565004
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacactcctcat 51  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||||    
T  20565052 ttgtcaaataagttgtcaccaaattggttgttcaaataacactcctcat 20565004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 26837589 - 26837635
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacactcctc 49  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||    
T  26837589 ttgtcaaataagttgtcaccaaattggttgttcaaataacactcctc 26837635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 3603248 - 3603297
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacactcctcatt 52  Q
    |||||||||||||||| | |||||||||| ||||||||||||||||||||    
T  3603248 ttgtcaaataagttgtcatcaaattggttgttcaaataacactcctcatt 3603297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 26585813 - 26585765
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacactcctcat 51  Q
    |||||||||||||||| | |||||||||| |||||||||||||||||||    
T  26585813 ttgtcaaataagttgtcatcaaattggttgttcaaataacactcctcat 26585765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 36494587 - 36494630
Alignment:
Q  2 attgtcaaataagttgttaccaaattggtttttcaaataacact 45  Q
    ||||||||||||||||| |||||||||||| |||||||||||||    
T  36494587 attgtcaaataagttgtcaccaaattggttgttcaaataacact 36494630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 51191925 - 51191972
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacactcctca 50  Q
    |||||||||||||||| |||||||||||| |||||||||||| |||||    
T  51191925 ttgtcaaataagttgtcaccaaattggttgttcaaataacacccctca 51191972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 1852885 - 1852839
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacactcctc 49  Q
    |||||||||||||||| | |||||||||| |||||||||||||||||    
T  1852885 ttgtcaaataagttgtcatcaaattggttattcaaataacactcctc 1852839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 7128255 - 7128301
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacactcctc 49  Q
    |||||||||||||||| ||||||||| || |||||||||||||||||    
T  7128255 ttgtcaaataagttgtcaccaaattgattgttcaaataacactcctc 7128301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 9008362 - 9008408
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacactcctc 49  Q
    |||||||||||||||| ||||||||| || |||||||||||||||||    
T  9008362 ttgtcaaataagttgtcaccaaattgattgttcaaataacactcctc 9008408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 21340658 - 21340704
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacactcctc 49  Q
    |||||||||||||||| ||||||||| || |||||||||||||||||    
T  21340658 ttgtcaaataagttgtcaccaaattgattgttcaaataacactcctc 21340704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 37178841 - 37178890
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacactcctcatt 52  Q
    |||||||||||||||| ||||||||| || ||||||||| ||||||||||    
T  37178841 ttgtcaaataagttgtcaccaaattgattgttcaaataaaactcctcatt 37178890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 756993 - 757033
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataaca 43  Q
    |||||||||||||||| |||||||||||| |||||||||||    
T  756993 ttgtcaaataagttgtcaccaaattggttgttcaaataaca 757033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 16987072 - 16987120
Alignment:
Q  1 aattgtcaaataagttgttaccaaattggtttttcaaataacactcctc 49  Q
    |||||||||||||||||| ||||||||  || |||||||||||||||||    
T  16987072 aattgtcaaataagttgtcaccaaattaattcttcaaataacactcctc 16987120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 1790645 - 1790688
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacactc 46  Q
    |||||||||||||||| |||||||| ||| ||||||||||||||    
T  1790645 ttgtcaaataagttgtcaccaaattagttattcaaataacactc 1790688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 33024505 - 33024462
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacactc 46  Q
    |||||||||||||||| ||||||||| || ||||||||||||||    
T  33024505 ttgtcaaataagttgtcaccaaattgattgttcaaataacactc 33024462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 38303622 - 38303579
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacactc 46  Q
    |||||||||||||| | |||||||||||| ||||||||||||||    
T  38303622 ttgtcaaataagttatcaccaaattggttgttcaaataacactc 38303579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 4514388 - 4514342
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacactcctc 49  Q
    |||||||||||||||| || |||||| || |||||||||||||||||    
T  4514388 ttgtcaaataagttgtcactaaattgattgttcaaataacactcctc 4514342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 8411652 - 8411606
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacactcctc 49  Q
    |||| ||||||||||| |||||||||||| |||||||||||| ||||    
T  8411652 ttgttaaataagttgtcaccaaattggttgttcaaataacacacctc 8411606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 47214344 - 47214398
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacactcctcattcaatt 57  Q
    |||||||||||||||| || ||||||||| ||||||||||||  ||| |||||||    
T  47214344 ttgtcaaataagttgtcacaaaattggttgttcaaataacaccactctttcaatt 47214398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 51286302 - 51286260
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacact 45  Q
    |||||||||||||||| || ||||||||| |||||||||||||    
T  51286302 ttgtcaaataagttgtcacaaaattggttgttcaaataacact 51286260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 43
Target Start/End: Complemental strand, 3024685 - 3024644
Alignment:
Q  2 attgtcaaataagttgttaccaaattggtttttcaaataaca 43  Q
    ||||||||||||||||| |||||||| ||| |||||||||||    
T  3024685 attgtcaaataagttgtcaccaaattagttgttcaaataaca 3024644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 36779204 - 36779156
Alignment:
Q  2 attgtcaaataagttgttaccaaattggtttttcaaataacactcctca 50  Q
    |||||||||||| || | ||||||||| || ||||||||||||||||||    
T  36779204 attgtcaaataaattatcaccaaattgattgttcaaataacactcctca 36779156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 29162912 - 29162861
Alignment:
Q  1 aattgtcaaataagttgttaccaaattggtttttcaaataacactcctcatt 52  Q
    |||||||||||||||||| |||||||||||| |||||||||||||| |||||    
T  29162912 aattgtcaaataagttgtcaccaaattggttgttcaaataacactcatcatt 29162861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 32815305 - 32815351
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacactcctc 49  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||    
T  32815305 ttgtcaaataagttgtcaccaaattggttgttcaaataacactcctc 32815351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 47078186 - 47078132
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacactcctcattcaatt 57  Q
    ||||||||||||||||||| ||||||||| ||||||||||||| ||| |||||||    
T  47078186 ttgtcaaataagttgttacaaaattggttgttcaaataacactactctttcaatt 47078132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 50
Target Start/End: Complemental strand, 23048334 - 23048287
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacactcctca 50  Q
    |||| ||||||||||| |||||||||||| ||||||||||||||||||    
T  23048334 ttgtaaaataagttgtcaccaaattggttgttcaaataacactcctca 23048287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 50
Target Start/End: Complemental strand, 39231662 - 39231615
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacactcctca 50  Q
    |||||||||||||||| |||||||| ||| ||||||||||||||||||    
T  39231662 ttgtcaaataagttgtcaccaaattagttgttcaaataacactcctca 39231615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 37808698 - 37808652
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacactcctc 49  Q
    |||||||||| ||||| |||||||||||| |||||||||||||||||    
T  37808698 ttgtcaaatacgttgtcaccaaattggttgttcaaataacactcctc 37808652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 13163056 - 13163099
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacactc 46  Q
    |||||||||||||||| ||||||||| || ||||||||||||||    
T  13163056 ttgtcaaataagttgtcaccaaattgattgttcaaataacactc 13163099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 19786013 - 19785967
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacactcctc 49  Q
    |||||||||||||||| | ||||||| || |||||||||||||||||    
T  19786013 ttgtcaaataagttgtcatcaaattgattgttcaaataacactcctc 19785967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 26041254 - 26041208
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacactcctc 49  Q
    |||||||||||||||| ||||||||| || ||||||||| |||||||    
T  26041254 ttgtcaaataagttgtcaccaaattgattgttcaaataatactcctc 26041208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 29002743 - 29002785
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacact 45  Q
    |||||||||||| ||| |||||||||||| |||||||||||||    
T  29002743 ttgtcaaataagctgtcaccaaattggttgttcaaataacact 29002785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 41026182 - 41026228
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacactcctc 49  Q
    ||||||||||| |||| |||||||| ||| |||||||||||||||||    
T  41026182 ttgtcaaataaattgtcaccaaattagttgttcaaataacactcctc 41026228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 41666856 - 41666810
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacactcctc 49  Q
    ||||||||||| || | |||||||||||| |||||||||||||||||    
T  41666856 ttgtcaaataaattatcaccaaattggttgttcaaataacactcctc 41666810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 41402645 - 41402694
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacactcctcatt 52  Q
    |||| ||||||||||| |||||||| ||| ||||||||||||| ||||||    
T  41402645 ttgttaaataagttgtcaccaaattagttgttcaaataacacttctcatt 41402694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 2 - 49
Target Start/End: Complemental strand, 35098940 - 35098893
Alignment:
Q  2 attgtcaaataagttgttaccaaattggtttttcaaataacactcctc 49  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||||    
T  35098940 attgtcaaataagttgtcaccaaattggttgttcaaataacactcctc 35098893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 8267755 - 8267711
Alignment:
Q  2 attgtcaaataagttgttaccaaattggtttttcaaataacactc 46  Q
    ||||||||||||||||| |||||||||||| ||||||||||||||    
T  8267755 attgtcaaataagttgtcaccaaattggttgttcaaataacactc 8267711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 49
Target Start/End: Complemental strand, 16437499 - 16437452
Alignment:
Q  2 attgtcaaataagttgttaccaaattggtttttcaaataacactcctc 49  Q
    |||||||||||| |||| |||||||||||| |||||||||||||||||    
T  16437499 attgtcaaataaattgtcaccaaattggttgttcaaataacactcctc 16437452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 51
Target Start/End: Complemental strand, 21064159 - 21064112
Alignment:
Q  4 tgtcaaataagttgttaccaaattggtttttcaaataacactcctcat 51  Q
    ||||||||||||||| ||||||||| || |||||||||||||||||||    
T  21064159 tgtcaaataagttgtcaccaaattgattgttcaaataacactcctcat 21064112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 4430870 - 4430824
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacactcctc 49  Q
    |||||||||||||||| |||||||||||| |||||||| ||||||||    
T  4430870 ttgtcaaataagttgtcaccaaattggttgttcaaatagcactcctc 4430824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 17402854 - 17402814
Alignment:
Q  5 gtcaaataagttgttaccaaattggtttttcaaataacact 45  Q
    |||||||||||||| |||||||||||| |||||||||||||    
T  17402854 gtcaaataagttgtcaccaaattggttgttcaaataacact 17402814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 50
Target Start/End: Complemental strand, 39088803 - 39088756
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacactcctca 50  Q
    |||||||||||||||| || ||||||||| ||||||||||||| ||||    
T  39088803 ttgtcaaataagttgtcactaaattggttgttcaaataacactactca 39088756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 2224928 - 2224970
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacact 45  Q
    |||||||||||||||| | |||||||||| |||||||||||||    
T  2224928 ttgtcaaataagttgtcatcaaattggttgttcaaataacact 2224970  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 2688920 - 2688874
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacactcctc 49  Q
    ||||||||||| |||| |||||||||||| ||||||||||| |||||    
T  2688920 ttgtcaaataatttgtcaccaaattggttgttcaaataacaatcctc 2688874  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 23126277 - 23126227
Alignment:
Q  1 aattgtcaaataagttgttaccaaattggtttttcaaataacactcctcat 51  Q
    |||||||||||||||||| | |||||| ||| |||||||||||||| ||||    
T  23126277 aattgtcaaataagttgtcatcaaattagttgttcaaataacactcatcat 23126227  T

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Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 42267482 - 42267524
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacact 45  Q
    |||||||||||||||| | |||||||||| |||||||||||||    
T  42267482 ttgtcaaataagttgtcatcaaattggttgttcaaataacact 42267524  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 5042385 - 5042433
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacactcctcat 51  Q
    |||||||||||||| | ||||||||| || ||||||||||||| |||||    
T  5042385 ttgtcaaataagttatcaccaaattgattgttcaaataacacttctcat 5042433  T

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Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 33620745 - 33620793
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacactcctcat 51  Q
    |||| ||||||||||| || ||||||||| ||||||||||| |||||||    
T  33620745 ttgttaaataagttgtcactaaattggttgttcaaataacattcctcat 33620793  T

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Target: scaffold0471 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 144 - 190
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacactcctc 49  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||    
T  144 ttgtcaaataagttgtcaccaaattggttgttcaaataacactcctc 190  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 5327525 - 5327479
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacactcctc 49  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||    
T  5327525 ttgtcaaataagttgtcaccaaattggttgttcaaataacactcctc 5327479  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 48
Target Start/End: Complemental strand, 14986679 - 14986633
Alignment:
Q  2 attgtcaaataagttgttaccaaattggtttttcaaataacactcct 48  Q
    ||||||||||||||||| |||||||||||| ||||||||||||||||    
T  14986679 attgtcaaataagttgtcaccaaattggttgttcaaataacactcct 14986633  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 34504156 - 34504200
Alignment:
Q  2 attgtcaaataagttgttaccaaattggtttttcaaataacactc 46  Q
    ||||||||||||||||| |||||||||||| ||||||||||||||    
T  34504156 attgtcaaataagttgtcaccaaattggttgttcaaataacactc 34504200  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 49
Target Start/End: Complemental strand, 3610892 - 3610849
Alignment:
Q  6 tcaaataagttgttaccaaattggtttttcaaataacactcctc 49  Q
    ||||||||||||| |||||||||||| |||||||||||||||||    
T  3610892 tcaaataagttgtcaccaaattggttgttcaaataacactcctc 3610849  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 2075385 - 2075343
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacact 45  Q
    |||||||||||||||| |||||||||||| |||||||||||||    
T  2075385 ttgtcaaataagttgtcaccaaattggttgttcaaataacact 2075343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 22341109 - 22341067
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacact 45  Q
    |||||||||||||||| |||||||||||| |||||||||||||    
T  22341109 ttgtcaaataagttgtcaccaaattggttgttcaaataacact 22341067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 30036729 - 30036686
Alignment:
Q  2 attgtcaaataagttgttaccaaattggtttttcaaataacact 45  Q
    ||||||||||||||||| ||||||||| || |||||||||||||    
T  30036729 attgtcaaataagttgtcaccaaattgattgttcaaataacact 30036686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 11547462 - 11547417
Alignment:
Q  4 tgtcaaataagttgttaccaaattggtttttcaaataacactcctc 49  Q
    |||||||||| |||| ||||||||| || |||||||||||||||||    
T  11547462 tgtcaaataaattgtcaccaaattgattgttcaaataacactcctc 11547417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 2777253 - 2777209
Alignment:
Q  1 aattgtcaaataagttgttaccaaattggtttttcaaataacact 45  Q
    |||||||||||||||| | ||||||||| || |||||||||||||    
T  2777253 aattgtcaaataagttatcaccaaattgattgttcaaataacact 2777209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0449 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0449
Description:

Target: scaffold0449; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 9340 - 9388
Alignment:
Q  3 ttgtcaaataagttgttaccaaattggtttttcaaataacactcctcat 51  Q
    |||||||||||||||| | |||||||||| |||||||||||||| ||||    
T  9340 ttgtcaaataagttgtgatcaaattggttgttcaaataacactcttcat 9388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0687 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0687
Description:

Target: scaffold0687; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 2334 - 2384
Alignment:
Q  2 attgtcaaataagttgttaccaaattggtttttcaaataacactcctcatt 52  Q
    ||||||||||||||||| |||| |||| || |||||||||||||| |||||    
T  2334 attgtcaaataagttgtcaccatattgattgttcaaataacactcatcatt 2384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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