View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10865A_low_383 (Length: 228)
Name: NF10865A_low_383
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865A_low_383 |
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| [»] chr4 (2 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 1e-95; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 40 - 228
Target Start/End: Original strand, 34924673 - 34924861
Alignment:
| Q |
40 |
tgagaaagatcaaggtgaatgagattttgacagagggagatttgaagaggaaaagtttggttaatggagttgttaaagaggttaatggaggagagattag |
139 |
Q |
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| T |
34924673 |
tgagagagatcaaggtgaatgagattttgacagagggagatttgaagaggaaaagtttggttaatggagttgttaaagaggttaatggaggagagattag |
34924772 |
T |
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| Q |
140 |
ggagacgacagagaattgaggctgtgaatggaccttgaatgttggtgttggagagattaagttcggttacggtggtgtttgtggagtca |
228 |
Q |
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| T |
34924773 |
ggagacgacagaggattgaggctgtgaatggaccttgaatgttggtgttggagagattaagttcagttacggtggtgtttgtggagtca |
34924861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 34922902 - 34922856
Alignment:
| Q |
1 |
atggggaggggctaggaaggaagtggagagtggagatgttgagaaag |
47 |
Q |
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| T |
34922902 |
atggggaggggctaggaaggaagtggagagtggagatgttgagaaag |
34922856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 153 - 228
Target Start/End: Original strand, 10893060 - 10893135
Alignment:
| Q |
153 |
aattgaggctgtgaatggaccttgaatgttggtgttggagagattaagttcggttacggtggtgtttgtggagtca |
228 |
Q |
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| T |
10893060 |
aattgatgttgtgaatggaccttgaatgtttgcgttggagaggttaagttcagttacggtggtgttggtggagtca |
10893135 |
T |
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