View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10865A_low_397 (Length: 226)
Name: NF10865A_low_397
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865A_low_397 |
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Alignment Details
Target: chr5 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 19 - 190
Target Start/End: Complemental strand, 37498042 - 37497871
Alignment:
| Q |
19 |
actacttcaaagagatttgtattaatacaccaatattactttctgttcttaattttatagtcaagatttctagatatacatttagagataaattttgctt |
118 |
Q |
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| T |
37498042 |
actacttcaaagagatttgtattaatacaccaatattactttctgttcttaattttatagtcaagatttctagatatacatttgaagataaattttgctt |
37497943 |
T |
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| Q |
119 |
gattatttcgttctttatgtattcattttcaagttcttgtactatttatagttgaaggtgaaatgaaattct |
190 |
Q |
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| T |
37497942 |
gattatttcattctttttgtattcattttcaagtttttgtactatttatatttgaaggtgaaatgaaattct |
37497871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 142 - 208
Target Start/End: Complemental strand, 37497855 - 37497789
Alignment:
| Q |
142 |
cattttcaagttcttgtactatttatagttgaaggtgaaatgaaattctctactattcattattcat |
208 |
Q |
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| T |
37497855 |
cattctcaagtccttgtactatttatagttgaaggtgaaatgaaattctctactattcattactcat |
37497789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 35 - 202
Target Start/End: Complemental strand, 31321833 - 31321667
Alignment:
| Q |
35 |
ttgtattaatacaccaatattactttc-tgttcttaattttatagtcaagatttctagatatacatttagagataaattttgcttgattatttcgttctt |
133 |
Q |
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| T |
31321833 |
ttgtattaatacatcaatattacttttatgttcttaattttatagtcaagatttc-atatatacatttgaagtccatttctgcttcattatt-cattctt |
31321736 |
T |
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| Q |
134 |
tatgtattcattttcaagttcttgtactatttatagttgaaggtgaaatgaaattctctactattcatt |
202 |
Q |
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| T |
31321735 |
tatatatttattttcaagttattgtactatttgtatttgaaggtgaaatgaaattctttacaattcatt |
31321667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 139 - 205
Target Start/End: Complemental strand, 31321673 - 31321607
Alignment:
| Q |
139 |
attcattttcaagttcttgtactatttatagttgaaggtgaaatgaaattctctactattcattatt |
205 |
Q |
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| T |
31321673 |
attcattctcaagtccttgtactatctgtagttgaaggtgaaatgacattctctactattcattatt |
31321607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 33 - 202
Target Start/End: Complemental strand, 42601864 - 42601699
Alignment:
| Q |
33 |
atttgtattaatacaccaatattactttctgttcttaattttatagtcaag-----atttctagatatacatttagagataaattttgcttgattatttc |
127 |
Q |
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| T |
42601864 |
atttgtattaatacatcaatatt---ttctgttcttaattttatagtcaagtcaagatttccagatatacatttgaagtcaaattctgcttcactatttc |
42601768 |
T |
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| Q |
128 |
gttctttatgtattcattttcaagttcttgtactatttatagttgaaggtgaaatgaaattctctactattcatt |
202 |
Q |
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| T |
42601767 |
attttttatgtattcattatcaagtcgttgtactat------ttgaaggtgaaatgaaattcattacaattcatt |
42601699 |
T |
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