View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10865A_low_398 (Length: 226)
Name: NF10865A_low_398
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865A_low_398 |
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Alignment Details
Target: chr5 (Bit Score: 157; Significance: 1e-83; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 22 - 202
Target Start/End: Original strand, 11860146 - 11860326
Alignment:
| Q |
22 |
agcaaagaaactaaggaccattcttttgccatacaacattaacaaccctcagcttccgcatgaggtaaaggtgacaacatcaacttgtgaaaagatcttc |
121 |
Q |
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| T |
11860146 |
agcaaagaaactaaggacctttcttttgccatacaacattaacaaccctcggcttccgtacgaggtaaaggtgacaacatcaacttgtgataagatcttc |
11860245 |
T |
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| Q |
122 |
gacaccttcaagtgctcgctacgcgtgttggatctacatgatttggggatcaaaacggttccgagctctattgaggatgtg |
202 |
Q |
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| T |
11860246 |
gacaccttcaagtgctcgctacgcgtgttggatctacatgatttggggatcaagacggttccgagctctattgaggatgtg |
11860326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 22 - 202
Target Start/End: Original strand, 11828011 - 11828191
Alignment:
| Q |
22 |
agcaaagaaactaaggaccattcttttgccatacaacattaacaaccctcagcttccgcatgaggtaaaggtgacaacatcaacttgtgaaaagatcttc |
121 |
Q |
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| T |
11828011 |
agcaaagaaactaaggaccattcttttgccatacaacattaacaaccctcgtcttccgcacgaggtaaagatgacaacgtcaacttgtgataagatcttc |
11828110 |
T |
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| Q |
122 |
gacaccttcaagtgctcgctacgcgtgttggatctacatgatttggggatcaaaacggttccgagctctattgaggatgtg |
202 |
Q |
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| T |
11828111 |
gacaccttcaagtactcgctacgcgtgttggatctacatgacttggggatcaagacagttccaagctctattgaggatgtg |
11828191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 22 - 198
Target Start/End: Complemental strand, 11902408 - 11902235
Alignment:
| Q |
22 |
agcaaagaaactaaggaccattcttttgccatacaacattaacaaccctcagcttccgcatgaggtaaaggtgacaacatcaacttgtgaaaagatcttc |
121 |
Q |
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| T |
11902408 |
agcaaagaaactgagaaccattcttttgccgtacagcactaacaaccctcgccttccacacgaggtgaagatgacaacatcaacatgcgataagatcttc |
11902309 |
T |
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| Q |
122 |
gacaccttcaagtgctcgctacgcgtgttggatctacatgatttggggatcaaaacggttccgagctctattgagga |
198 |
Q |
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| T |
11902308 |
aacaccttcaag---tccctacgtgtgctggatctacatgacttggggattaagatggttccaacatctattgagga |
11902235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 29 - 195
Target Start/End: Original strand, 12038921 - 12039084
Alignment:
| Q |
29 |
aaactaaggaccattcttttgccatacaacattaacaaccctcagcttccgcatgaggtaaaggtgacaacatcaacttgtgaaaagatcttcgacacct |
128 |
Q |
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| T |
12038921 |
aaactgaggaccattcttttgccatacaacactgacaaccctcggcttcctgacgaggtacagatgacaacatcaacctgtgataagatctttaacacct |
12039020 |
T |
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| Q |
129 |
tcaagtgctcgctacgcgtgttggatctacatgatttggggatcaaaacggttccgagctctattga |
195 |
Q |
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| T |
12039021 |
tcaa-agct--atgcgcgtgttagatatgcatgacttggggatcaagacgattccgagctctattga |
12039084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 21 - 174
Target Start/End: Original strand, 11731790 - 11731943
Alignment:
| Q |
21 |
tagcaaagaaactaaggaccattcttttgccatacaa---cattaacaaccctcagcttccgcatgaggtaaaggtgacaacatcaacttgtgaaaagat |
117 |
Q |
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| T |
11731790 |
tagcaaagaaactgaggaccattttattgccatacaaaaacattaacaaccctcggcttccacacgaggtgaagatgacgacgccaacctgtgataagat |
11731889 |
T |
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| Q |
118 |
cttcgacaccttcaagtgctcgctacgcgtgttggatctacatgatttggggatcaa |
174 |
Q |
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| T |
11731890 |
cttcaacaccttcaag---tccatgcacgtgttggatctacatgacttggggatcaa |
11731943 |
T |
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