View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10865A_low_4 (Length: 568)
Name: NF10865A_low_4
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865A_low_4 |
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| [»] scaffold0191 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 229 - 549
Target Start/End: Complemental strand, 31859928 - 31859608
Alignment:
| Q |
229 |
gttcactgaaaagataataagcacaccctggaataagaagtgtcatatcaatgcaggtacttcttgcactgcatggcaacatgagtagattaattacatc |
328 |
Q |
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| T |
31859928 |
gttcactgaaaagataataagcacaccctgaaataagaagtgtcatatcaatgcaggtacttcttgcactgcatggcaacatgagtagattaattacatc |
31859829 |
T |
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| Q |
329 |
taagtggttacagaaaaacggcgtgctcactatggaagcatctgaatggaatggattaacacaaattctaaaagaactatttgaagcaaaaacttcaact |
428 |
Q |
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| T |
31859828 |
taagtggttacagaaaaacggcgtgctcactatggaagcatctgaatggaatggattaacacaaattctaaaagaactatttgaagcaaaaacttcaact |
31859729 |
T |
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| Q |
429 |
caaagcaacgactttgatgctcactttccagctccggagggtctgaattctaaatttattagcatacaggaattgccaaacccaacatttgtctttgttg |
528 |
Q |
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| T |
31859728 |
cataacaacgactttgatactcactttccagctccggagggtctgaattctaaatttattagcatacaggaattgccaaacccaacatttgtcattgttg |
31859629 |
T |
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| Q |
529 |
ttgatattgatctactagact |
549 |
Q |
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| T |
31859628 |
tggatattgatctactagact |
31859608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 172; Significance: 4e-92; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 42 - 225
Target Start/End: Original strand, 929746 - 929929
Alignment:
| Q |
42 |
aaccattttaatatgcgacactatgccgcttacattcattgagtttccttcaaagataatttgatttctacctagcaaaatgcattagattgtatccatc |
141 |
Q |
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| T |
929746 |
aaccattttaatatgcgacactatgccgcttacattcattgagtttccttcaaagataatttgatttctacctagaaaaatgcattagattgtatccatc |
929845 |
T |
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| Q |
142 |
catacacgataaatgtgagaatttcctacctttcttcccacctttgataccacaatgttgcaaaaattgagagcacaggttctg |
225 |
Q |
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| T |
929846 |
catacacgataaatgtgagaatttcctacctttcttaccacctttgataccacaatgttgcaaaaattgagagcacgggttctg |
929929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 278 - 395
Target Start/End: Original strand, 8869428 - 8869545
Alignment:
| Q |
278 |
aatgcaggtacttcttgcactgcatggcaacatgagtagattaattacatctaagtggttacagaaaaacggcgtgctcactatggaagcatctgaatgg |
377 |
Q |
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|||||||||| | |||||||| || || |||||| ||||| |||| ||||| ||||||||| ||||| || ||| ||| |||||||||||||||||| |
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| T |
8869428 |
aatgcaggtattgcttgcactacaaggaaacatgggtagaataataacatcaaagtggttaaccaaaaaaggggtgtgcacaatggaagcatctgaatgg |
8869527 |
T |
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| Q |
378 |
aatggattaacacaaatt |
395 |
Q |
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| T |
8869528 |
aatggactaacacaaatt |
8869545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0191 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0191
Description:
Target: scaffold0191; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 151 - 213
Target Start/End: Complemental strand, 24981 - 24919
Alignment:
| Q |
151 |
taaatgtgagaatttcctacctttcttcccacctttgataccacaatgttgcaaaaattgaga |
213 |
Q |
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| T |
24981 |
taaatgtgagcatttcctatctttcttaccacctttgataccacagtgttgcaataaatgaga |
24919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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