View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10865A_low_400 (Length: 225)
Name: NF10865A_low_400
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865A_low_400 |
 | |
|
| [»] scaffold0009 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 4301505 - 4301726
Alignment:
| Q |
1 |
aatatcatacatagtttttcatacattaatttatcacccaatttgtgtttgattatgaaacattgctgattccttgctagctgtctagctaaggtatctc |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4301505 |
aatatcatatatagtttttcatacattaatttatcacccaatttgtgtttgattatgaaacattgctgattccttgctagctgtctagctaaggtatctc |
4301604 |
T |
|
| Q |
101 |
ttcataagttaagttgttttttgccatctgaaacttgccaccctgagatctagaaggatgcaaatgcaatggccttgaatttgagtcaagaagataatga |
200 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4301605 |
ttcataagttaagttattttttgccatctgaaacttgacaccctgagatctagcaggatgcaaatgcaatggccttgaatttgagtcaagaagataatga |
4301704 |
T |
|
| Q |
201 |
agaacaagaaccataaccaatg |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
4301705 |
agaacaagaaccataaccaatg |
4301726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 86944 - 87167
Alignment:
| Q |
1 |
aatatcatacatagtttttcatacattaatttat----caccc-aatttgtgtttgattatgaaacattgctgattccttgctagctgtctagctaaggt |
95 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
86944 |
aatatcatacatagtttttcacacattaatttatttatcacttgaatttgtgtttcattatgaaacattgctgattccttgctagctgtctagctaaggt |
87043 |
T |
|
| Q |
96 |
atctcttcataagttaagttgttttttgccatctgaaacttgccaccctgagatctagaaggatgcaaatgcaatggccttgaatttgagtcaagaagat |
195 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| | ||||| |||||||||| |||| ||||||||||| ||||| |
|
|
| T |
87044 |
atctcttcataagttaagttgtttttttccatctgaaacttgccaccctgatatcttgtaggattcaaatgcaatagcctcgaatttgagtc---aagat |
87140 |
T |
|
| Q |
196 |
aatgaagaacaagaaccataaccaatg |
222 |
Q |
| |
|
||||||||||| ||||||||||||||| |
|
|
| T |
87141 |
aatgaagaacatgaaccataaccaatg |
87167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 92; Significance: 8e-45; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 97 - 222
Target Start/End: Original strand, 33101057 - 33101179
Alignment:
| Q |
97 |
tctcttcataagttaagttgttttttgccatctgaaacttgccaccctgagatctagaaggatgcaaatgcaatggccttgaatttgagtcaagaagata |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||| |||||||||||||||| |||||| |
|
|
| T |
33101057 |
tctcttcataagttaagttgttttttgccatctgaaacttgccaccctgagatcttgtaggattcaaatgcaatagccttgaatttgagtc---aagata |
33101153 |
T |
|
| Q |
197 |
atgaagaacaagaaccataaccaatg |
222 |
Q |
| |
|
|||||||||| ||||||||||||||| |
|
|
| T |
33101154 |
atgaagaacatgaaccataaccaatg |
33101179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 33099376 - 33099485
Alignment:
| Q |
1 |
aatatcatacatagtttttcatacattaatttat----caccc-aatttgtgtttgattatgaaacattgctgattccttgctagctgtctagctaaggt |
95 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33099376 |
aatatcatacatagtttttcacacattaatttatttatcacttgaatttgtgtttcattatgaaacattgctgattccttgctagctgtctagctaaggt |
33099475 |
T |
|
| Q |
96 |
atctcttcat |
105 |
Q |
| |
|
|||||||||| |
|
|
| T |
33099476 |
atctcttcat |
33099485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University