View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10865A_low_407 (Length: 223)
Name: NF10865A_low_407
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865A_low_407 |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 20 - 210
Target Start/End: Complemental strand, 42849909 - 42849719
Alignment:
| Q |
20 |
attggcggagagtttcaattgaaagaagtggaaattgcaattgaggcattggattctgatggcgatggattattgagtttggaggatttgataaagctta |
119 |
Q |
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| T |
42849909 |
attggcggagagtttcaattgaaagaagtggaaattgcaattgaggcattggattctgatggtgatggattattgagtttggaggatttgataaagctta |
42849810 |
T |
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| Q |
120 |
tggaatcagggggagaggaagaaaaattgaaggatttgagggaagcttttgaaatgtatgataatgaaggatgtggattcataacaccaaa |
210 |
Q |
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| T |
42849809 |
tggaatcagggggagaggaagaaaaattgaaggatttgagggaagcttttgaaatgtatgataatgaaggatgtggattcataacaccaaa |
42849719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 24 - 210
Target Start/End: Complemental strand, 42840110 - 42839924
Alignment:
| Q |
24 |
gcggagagtttcaattgaaagaagtggaaattgcaattgaggcattggattctgatggcgatggattattgagtttggaggatttgataaagcttatgga |
123 |
Q |
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| T |
42840110 |
gcggagagtttcaattgaaagaagtggagattgctattgaggcattggattctgatggtgatgggttattgagtttggaggatttgatagcgctaatgga |
42840011 |
T |
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| Q |
124 |
atcagggggagaggaagaaaaattgaaggatttgagggaagcttttgaaatgtatgataatgaaggatgtggattcataacaccaaa |
210 |
Q |
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| T |
42840010 |
atcagggggagaggaagaaaaattgaaggatttgagggaagcttttgaaatgtatgatgatgaagggtgtgggtacataacaccaaa |
42839924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 20 - 210
Target Start/End: Complemental strand, 42846922 - 42846732
Alignment:
| Q |
20 |
attggcggagagtttcaattgaaagaagtggaaattgcaattgaggcattggattctgatggcgatggattattgagtttggaggatttgataaagctta |
119 |
Q |
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| T |
42846922 |
attggcggagagtttcaattgaaagaagttgaaattgctattgaggcattggattctgatggtgatgggttattgagtttgggagatttgattacgttaa |
42846823 |
T |
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| Q |
120 |
tggaatcagggggagaggaagaaaaattgaaggatttgagggaagcttttgaaatgtatgataatgaaggatgtggattcataacaccaaa |
210 |
Q |
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| T |
42846822 |
tggaatcagggggagaggaggaaaaattgaaggatttgagggaagcttttgaaatgtatgataatgaaggatgtggattcataacgccaaa |
42846732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 182
Target Start/End: Complemental strand, 33931679 - 33931534
Alignment:
| Q |
37 |
attgaaagaagtggaaattgcaattgaggcattggattctgatggcgatggattattgagtttggaggatttgataaagcttatggaatcagggggagag |
136 |
Q |
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||||||||||| ||||| || ||||| ||| ||||||| ||||| ||||| | |||||||||||||| || || | |||||| ||| |||||| |
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| T |
33931679 |
attgaaagaagctgaaatggctattgaagcaatggattcagatggtgatggttatttgagtttggaggaattaattgctttgatggaagaaggtggagag |
33931580 |
T |
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| Q |
137 |
gaagaaaaattgaaggatttgagggaagcttttgaaatgtatgata |
182 |
Q |
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| T |
33931579 |
gaacaaaagttgaaggatttgagagaagcatttgagatgtatgata |
33931534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 182
Target Start/End: Complemental strand, 33938484 - 33938339
Alignment:
| Q |
37 |
attgaaagaagtggaaattgcaattgaggcattggattctgatggcgatggattattgagtttggaggatttgataaagcttatggaatcagggggagag |
136 |
Q |
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| T |
33938484 |
attgaaagaagctgaaatggctattgaagcaatggattcagatggtgatggttatttgagtttggaggaattaattgctttgatggaagaaggtggagag |
33938385 |
T |
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| Q |
137 |
gaagaaaaattgaaggatttgagggaagcttttgaaatgtatgata |
182 |
Q |
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| T |
33938384 |
gaacaaaagttgaaggatttgagagaagcatttgagatgtatgata |
33938339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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