View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10865A_low_408 (Length: 223)
Name: NF10865A_low_408
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865A_low_408 |
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Alignment Details
Target: chr8 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 20 - 195
Target Start/End: Original strand, 38124647 - 38124822
Alignment:
| Q |
20 |
ctatggaatttaaataaattgctattggttcgtgatacgctgtttagaacaaagtgatgtcaaatagtagctatgaaactctgtagcttaatagagtttg |
119 |
Q |
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| T |
38124647 |
ctatggaatttaaataaattgctattggttcgtgatacgctgtttagaacaaagtgatgtcaaatagtagctatgaaactctgtaacttaatagagtttg |
38124746 |
T |
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| Q |
120 |
aacaaactgctatattccacgatctacagttgaaaacacttttttctacttacacagctgaatttgtttttgtgtg |
195 |
Q |
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| T |
38124747 |
aacaaactgctatattccacgatctacacttgaaaacacttttttctacttacacagctgaatttgtttttgtgtg |
38124822 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 85
Target Start/End: Complemental strand, 13510345 - 13510301
Alignment:
| Q |
41 |
ctattggttcgtgatacgctgtttagaacaaagtgatgtcaaata |
85 |
Q |
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| T |
13510345 |
ctattgtttcgtgaaacgctatttagtacaaagtgatgtcaaata |
13510301 |
T |
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