View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10865A_low_409 (Length: 223)
Name: NF10865A_low_409
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865A_low_409 |
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Alignment Details
Target: chr3 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 19 - 203
Target Start/End: Complemental strand, 32894692 - 32894508
Alignment:
| Q |
19 |
tatatacttaactcaattcattgcattcatgtaataaagaacttagtaagtgctcatacaatataacaattaagtaactttaatcaattagttcacactt |
118 |
Q |
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| T |
32894692 |
tatatacttaactcaattcattgcattcatgtgataaagaacttagtaagtgctcatacaatataacaattaagtaactttaatcaatcagttcacactt |
32894593 |
T |
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| Q |
119 |
tataagagagtttgcaaagattgtctcaatgaagaattatttatatctaactaacaagagaatattatatcatgcttacgtatgc |
203 |
Q |
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| T |
32894592 |
tataagagagtttgcaaagattgtctcagtgaagaattatttatatctaactaacaagagaatattatatcctgcttacatatgc |
32894508 |
T |
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Target: chr6 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 19 - 203
Target Start/End: Complemental strand, 27076825 - 27076641
Alignment:
| Q |
19 |
tatatacttaactcaattcattgcattcatgtaataaagaacttagtaagtgctcatacaatataacaattaagtaactttaatcaattagttcacactt |
118 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
27076825 |
tatatacttaactaaattcattgcattcatgtaataaagaacttagtaagtgctcatacaatataacaattaagtaactttaatcaatcagttcacactt |
27076726 |
T |
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| Q |
119 |
tataagagagtttgcaaagattgtctcaatgaagaattatttatatctaactaacaagagaatattatatcatgcttacgtatgc |
203 |
Q |
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| T |
27076725 |
tataacagagtttgcaaagattgtctcagtgaagaattatttatatctaactaacaagagaatattatatcctgcttacatatgc |
27076641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 19 - 203
Target Start/End: Complemental strand, 26051922 - 26051738
Alignment:
| Q |
19 |
tatatacttaactcaattcattgcattcatgtaataaagaacttagtaagtgctcatacaatataacaattaagtaactttaatcaattagttcacactt |
118 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||| |
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| T |
26051922 |
tatatacttaacttaattcattgcattcatgtaataaagaacttagtaagtactcatacaatataaaaattaagtaactttaatcaatcagttcacactt |
26051823 |
T |
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| Q |
119 |
tataagagagtttgcaaagattgtctcaatgaagaattatttatatctaactaacaagagaatattatatcatgcttacgtatgc |
203 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
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| T |
26051822 |
tataagagagtttgcaaagattgtctcagtgaagaattatttatatctaactaacaagagaatattatatcctgcttacatatgc |
26051738 |
T |
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