View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10865A_low_41 (Length: 415)
Name: NF10865A_low_41
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865A_low_41 |
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Alignment Details
Target: chr7 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 13 - 409
Target Start/End: Original strand, 45945532 - 45945928
Alignment:
| Q |
13 |
ggaccataactacgtgtaacacatgcaaaagcaaagatataataaaaaagacattttactcaaagacatgtacctcaaagatacgtagtttggagtaatt |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
45945532 |
ggaccataactacgtgtaacacatgcaaaagcaaagatataataaaaaagacattttactcaaagacatgtacctcgaagatacgtagtttggagtaatt |
45945631 |
T |
|
| Q |
113 |
gatgacataatatgccatagcaaattcggtttggttggctggagggtacacaggatcaatctccttaacaatgcaaccttgtgaaacaaggatcttacga |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45945632 |
gatgacataatatgccatagcaaattcggtttggttggctggagggtacacaggagcaatctccttaacaatgcaaccttgtgaaacaaggatcttacga |
45945731 |
T |
|
| Q |
213 |
tgttcttcgggaacatcaggtaagatagcaacaaccaaagggtacatggttttggtttttctcaatcctttggctaaaccaacaacacctttgatgtaat |
312 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45945732 |
tgttcttcaggaacatcaggtaagatagcaacaaccaaagggtacatggttttggtttttctcaatcctttggctaaaccaacaacacctttgatgtaat |
45945831 |
T |
|
| Q |
313 |
cagcgtttccagcaaggaaagtcacaaaggcacggcctttaccaccgtcgagttttggtttctcaacggtagcattgacggcggtggtggtgattgc |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
45945832 |
cagcgtttccagcaaggaaagtcacaaaggcacggcctttaccaccgtcgagttttggtttctcaacggtagcattcacggcggtggtggtgattgc |
45945928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 93 - 343
Target Start/End: Complemental strand, 55221583 - 55221333
Alignment:
| Q |
93 |
atacgtagtttggagtaattgatgacataatatgccatagcaaattcggtttggttggctggagggtacacaggatcaatctccttaacaatgcaacctt |
192 |
Q |
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| T |
55221583 |
atacgtagtttggagtagttgatgacataataagccatagcaaattgggtttgattcttaggagggtaaacaggtgcaatctctctaacaatgcaacctt |
55221484 |
T |
|
| Q |
193 |
gtgaaacaaggatcttacgatgttcttcgggaacatcaggtaagatagcaacaaccaaagggtacatggttttggtttttctcaatcctttggctaaacc |
292 |
Q |
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| T |
55221483 |
gagcgatgagaatattcctatgttgctcaggaacatcaggcaacactgcaaccactagagggtacatggttttgaccttacgaagacctttggctaaacc |
55221384 |
T |
|
| Q |
293 |
aacaacacctttgatgtaatcagcgtttccagcaaggaaagtcacaaaggc |
343 |
Q |
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| T |
55221383 |
aaccacacctttgacatagtcaccatttccaacaaggaaggtcacaaaggc |
55221333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 93 - 346
Target Start/End: Complemental strand, 37697720 - 37697467
Alignment:
| Q |
93 |
atacgtagtttggagtaattgatgacataatatgccatagcaaattcggtttggttggctggagggtacacaggatcaatctccttaacaatgcaacctt |
192 |
Q |
| |
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||||||| ||||||||| |||||||||||||| ||||| ||||| | |||||||| ||||||| || ||||| ||||| || ||||||||||||||| |
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| T |
37697720 |
atacgtaatttggagtagttgatgacataataagccatggcaaactgagtttggttttctggaggataaacaggttcaatttctctaacaatgcaacctt |
37697621 |
T |
|
| Q |
193 |
gtgaaacaaggatcttacgatgttcttcgggaacatcaggtaagatagcaacaaccaaagggtacatggttttggtttttctcaatcctttggctaaacc |
292 |
Q |
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| || || || || | |||||||| |||||||||||||| | ||||| || ||||| |||||||||||| ||| | | ||||| |||||||| |
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| T |
37697620 |
gagaggtgagaatattcctatgttcttgaggaacatcaggtaacactgcaaccactaaaggatacatggttttgactttacgaagacctttagctaaacc |
37697521 |
T |
|
| Q |
293 |
aacaacacctttgatgtaatcagcgtttccagcaaggaaagtcacaaaggcacg |
346 |
Q |
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||||||||| || | |||||| | |||||||||||||| || || |||||||| |
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| T |
37697520 |
aacaacacccttcacataatcaccatttccagcaaggaaggtgacgaaggcacg |
37697467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 93 - 346
Target Start/End: Original strand, 37687798 - 37688052
Alignment:
| Q |
93 |
atacgtagtttggagtaattgatgacataatatgccatagcaaattcggtttggttggc-tggagggtacacaggatcaatctccttaacaatgcaacct |
191 |
Q |
| |
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||||||| ||||||||| |||||||||||||| ||||| ||||| | |||||||| | |||||| || ||||| ||||| || |||||||||||||| |
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| T |
37687798 |
atacgtaatttggagtagttgatgacataataagccatggcaaactgagtttggttttcttggaggataaacaggttcaatttctctaacaatgcaacct |
37687897 |
T |
|
| Q |
192 |
tgtgaaacaaggatcttacgatgttcttcgggaacatcaggtaagatagcaacaaccaaagggtacatggttttggtttttctcaatcctttggctaaac |
291 |
Q |
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|| || || || || | |||||||| |||||||||||||| | ||||| || ||||| |||||||||||| ||| | | ||||| ||||||| |
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| T |
37687898 |
tgagaggtgagaatattcctatgttcttgaggaacatcaggtaacactgcaaccactaaaggatacatggttttgactttacgaagacctttagctaaac |
37687997 |
T |
|
| Q |
292 |
caacaacacctttgatgtaatcagcgtttccagcaaggaaagtcacaaaggcacg |
346 |
Q |
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|||||||||| || | |||||| | |||||||||||||| || || |||||||| |
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| T |
37687998 |
caacaacacccttcacataatcaccatttccagcaaggaaggtgacgaaggcacg |
37688052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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