View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10865A_low_411 (Length: 222)
Name: NF10865A_low_411
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865A_low_411 |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 19 - 203
Target Start/End: Original strand, 6073565 - 6073749
Alignment:
| Q |
19 |
ggagttcatttgcggaggagtcacggaggcgacagaggtaaacggtgcctatgtcgccggcgcctatacggcggaggagatggaagtcacggaaggtgag |
118 |
Q |
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| T |
6073565 |
ggagttcatttgaggaggagtcacggaggcgacagaggtaaacggtgcctatgtcgccggcgcctatacggcggaggagatggaagtcacggaaggtgag |
6073664 |
T |
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| Q |
119 |
gccggatttgcggatggcggtgtaggcaaagtcggacgaacggtgaggtttgatggagagagattccggcgaggaggagggaagt |
203 |
Q |
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| T |
6073665 |
gccggatttgcggatggcggtgtaggcgaagtcggaggaacgatgaggtttgatggagagagattccggcgaggaggatggaagt |
6073749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 45 - 179
Target Start/End: Complemental strand, 37170181 - 37170044
Alignment:
| Q |
45 |
aggcgacagaggtaaacggtgcctatgtcgccggcgcctatacggcggaggagatggaagtcacggaaggtgaggccggatttg---cggatggcggtgt |
141 |
Q |
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| T |
37170181 |
aggcggcataggtaaacagtaccgatatctccggcgccgatacggcggaggaggtggaagtcacgaaatgtgagagcggacttgcgacggatggcggagt |
37170082 |
T |
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| Q |
142 |
aggcaaagtcggacgaacggtgaggtttgatggagaga |
179 |
Q |
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| T |
37170081 |
aagcgaagtcggaggagcggtgaggtttgagggagaga |
37170044 |
T |
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