View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10865A_low_413 (Length: 221)
Name: NF10865A_low_413
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865A_low_413 |
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| [»] scaffold0150 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 120; Significance: 1e-61; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 31 - 194
Target Start/End: Original strand, 52142045 - 52142208
Alignment:
| Q |
31 |
atttcagtcgacgagctttgagctcttgggtttaacagaacatccttagtttggtcgtgtagcatgtaattctggttgaggttttcaacactctcatata |
130 |
Q |
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| T |
52142045 |
atttcagttgacgagctttgagctcttgggtttaagagtacatccttagtttgatctggtagcatgtaattctggttgaggttttcaacactctcataca |
52142144 |
T |
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| Q |
131 |
gatttcctaagctaccaaccatgcaattcgcgcttagcagcttcacaacagtaccgattggcaa |
194 |
Q |
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| T |
52142145 |
gattccctaagctaccaaccatgccattagcgcttagcagcttcacaacagtgccgattggcaa |
52142208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 28 - 197
Target Start/End: Original strand, 52145560 - 52145729
Alignment:
| Q |
28 |
gagatttcagtcgacgagctttgagctcttgggtttaacagaacatccttagtttggtcgtgtagcatgtaattctggttgaggttttcaacactctcat |
127 |
Q |
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| T |
52145560 |
gagatttcagttgaaaagctttgagctcttgggtttagcaagacatccttcgtttgaaatggttgcatgcaattttggttgaggttttcaacactctgat |
52145659 |
T |
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| Q |
128 |
atagatttcctaagctaccaaccatgcaattcgcgcttagcagcttcacaacagtaccgattggcaagca |
197 |
Q |
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| T |
52145660 |
acagatttcctaaactaccaatcatgccatttgtgcttaggagcttaaccacggtgccaattggcaagca |
52145729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 112; Significance: 9e-57; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 30 - 197
Target Start/End: Complemental strand, 17522543 - 17522376
Alignment:
| Q |
30 |
gatttcagtcgacgagctttgagctcttgggtttaacagaacatccttagtttggtcgtgtagcatgtaattctggttgaggttttcaacactctcatat |
129 |
Q |
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| T |
17522543 |
gatttcagttgacgagctttgagctcttgggtttaagagaacatccttcgtttgttctggtagcatgcaattctgattgaggttttcaacactctcatac |
17522444 |
T |
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| Q |
130 |
agatttcctaagctaccaaccatgcaattcgcgcttagcagcttcacaacagtaccgattggcaagca |
197 |
Q |
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| T |
17522443 |
agattccctaagctaccaaccatgccatttgcgcttagtagcttcacaacagtgccgattggcaagca |
17522376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 152
Target Start/End: Original strand, 17016902 - 17016962
Alignment:
| Q |
92 |
gcatgtaattctggttgaggttttcaacactctcatatagatttcctaagctaccaaccat |
152 |
Q |
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| T |
17016902 |
gcatgtaattgtggttgaggttttctacactctggtagaggttgcctaagctcccaaccat |
17016962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 152
Target Start/End: Original strand, 17547339 - 17547399
Alignment:
| Q |
92 |
gcatgtaattctggttgaggttttcaacactctcatatagatttcctaagctaccaaccat |
152 |
Q |
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| T |
17547339 |
gcatgtaattgtggttgaggttttctacactctggtagaggttgcctaagctcccaaccat |
17547399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0150 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0150
Description:
Target: scaffold0150; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 152
Target Start/End: Complemental strand, 18171 - 18111
Alignment:
| Q |
92 |
gcatgtaattctggttgaggttttcaacactctcatatagatttcctaagctaccaaccat |
152 |
Q |
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| T |
18171 |
gcatgtaattgtggttgaggttttctacactctggtagaggttgcctaagctcccaaccat |
18111 |
T |
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