View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10865A_low_416 (Length: 221)
Name: NF10865A_low_416
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865A_low_416 |
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Alignment Details
Target: chr7 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 17 - 170
Target Start/End: Original strand, 11647117 - 11647270
Alignment:
| Q |
17 |
gaacacatgaaaataagagagttgtaaagttttgtccataaaagaatgcatttgtatatcagacaaaaatattgcatttgtagaatgcatttgtaaagaa |
116 |
Q |
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| T |
11647117 |
gaacacatgaaaataagagagttttaaagttttgtgcataaaagaatgcatttgtataccagacaaaaagattgcatttgtagaatgcatttgtaaagaa |
11647216 |
T |
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| Q |
117 |
aatgaataactataatctaaataataaataggttgcaaaaaggatatggcaggg |
170 |
Q |
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| T |
11647217 |
aatgaataactataatctaaataataaataggttgcaaaaaggatatggcaggg |
11647270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 17 - 175
Target Start/End: Original strand, 2040567 - 2040724
Alignment:
| Q |
17 |
gaacacatgaaaataagagagttgtaaagttttgtccataaaagaatgcatttgtatatcagacaaaaatattgcatttgtagaatgcatttgtaaagaa |
116 |
Q |
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| T |
2040567 |
gaacacatgaaaataa-agagttgtaaagttttgtccataaaataatgcatttgtataccagacaaaaagattgcatttgcagaatgcatttgtaaagaa |
2040665 |
T |
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| Q |
117 |
aatgaataactataatctaaataataaataggttgcaaaaaggatatggcagggcaact |
175 |
Q |
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| T |
2040666 |
aatgaataactataatctaaataataaataggttgcaaaaaggatatggcagggcaact |
2040724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 2040827 - 2040875
Alignment:
| Q |
173 |
actctgctaatcacttgtgcaaagagcagatgtttcgtttgaaaactaa |
221 |
Q |
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| T |
2040827 |
actctgctactcacttgtgcaaagtgcagatgctccgtttgaaaactaa |
2040875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 117 - 173
Target Start/End: Original strand, 32075121 - 32075177
Alignment:
| Q |
117 |
aatgaataactataatctaaataataaataggttgcaaaaaggatatggcagggcaa |
173 |
Q |
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||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||| |
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| T |
32075121 |
aatgagtaactatactctaaataataaataggttgcaaaaaggatatggaagggcaa |
32075177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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