View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10865A_low_421 (Length: 220)
Name: NF10865A_low_421
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865A_low_421 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 20 - 185
Target Start/End: Complemental strand, 49124390 - 49124225
Alignment:
| Q |
20 |
cttggaatgtagttatggctttttcaatcacaacattaaccaagtatacaaaattcaaaattacaactgttaacaaattaatgaacaattccgattggag |
119 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49124390 |
cttggaatgtagttaaggctttttcaatcacaacattaaccaagtatacaaaattcaaaattacaactgttaacaaattaatgaacaattccgattggag |
49124291 |
T |
|
| Q |
120 |
aagttatagatcgttttcattctgcatcttaaaagttttgtccccttaacaaagtttattatgaat |
185 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49124290 |
aagttatagatcgttttcattctgcatcttaaaagttttgtccccttaacaaagtttattatgaat |
49124225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 178 - 220
Target Start/End: Complemental strand, 49124171 - 49124129
Alignment:
| Q |
178 |
ttatgaatattaaaatctatgttaacacacttaacatatttac |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49124171 |
ttatgaatattaaaatctatgttaacacacttaacatatttac |
49124129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 84
Target Start/End: Complemental strand, 11683266 - 11683218
Alignment:
| Q |
36 |
ggctttttcaatcacaacattaaccaagtatacaaaattcaaaattaca |
84 |
Q |
| |
|
|||| ||||||||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
11683266 |
ggctatttcaatcacaactttaacctagtatacaaaattcaaaattaca |
11683218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 84
Target Start/End: Complemental strand, 18988475 - 18988416
Alignment:
| Q |
25 |
aatgtagttatggctttttcaatcacaacattaaccaagtatacaaaattcaaaattaca |
84 |
Q |
| |
|
|||||||||| |||| ||||||| ||||| |||||||||| | |||| |||||||||||| |
|
|
| T |
18988475 |
aatgtagttaaggctatttcaattacaactttaaccaagtttgcaaagttcaaaattaca |
18988416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 84
Target Start/End: Original strand, 30341290 - 30341349
Alignment:
| Q |
25 |
aatgtagttatggctttttcaatcacaacattaaccaagtatacaaaattcaaaattaca |
84 |
Q |
| |
|
|||||||||| |||| ||||||| ||||| |||||||||| |||||| |||||||||||| |
|
|
| T |
30341290 |
aatgtagttaaggctatttcaattacaactttaaccaagtttacaaagttcaaaattaca |
30341349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 84
Target Start/End: Original strand, 23917049 - 23917108
Alignment:
| Q |
25 |
aatgtagttatggctttttcaatcacaacattaaccaagtatacaaaattcaaaattaca |
84 |
Q |
| |
|
|||||||||| |||| ||||||| ||||| |||||||||| | |||| |||||||||||| |
|
|
| T |
23917049 |
aatgtagttaaggctatttcaattacaactttaaccaagtttgcaaagttcaaaattaca |
23917108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University