View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10865A_low_429 (Length: 217)
Name: NF10865A_low_429
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865A_low_429 |
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| [»] chr6 (10 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 172; Significance: 1e-92; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 22 - 217
Target Start/End: Complemental strand, 26975725 - 26975530
Alignment:
| Q |
22 |
agtgttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgag |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||| |
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| T |
26975725 |
agtgttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagtagtgagttcacttttaatattcgag |
26975626 |
T |
|
| Q |
122 |
atttgagtccaactaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcgcgttcat |
217 |
Q |
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||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
26975625 |
atttgagtccaacaaggtaatcagcaacatgtaaaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcacgttcat |
26975530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 26 - 217
Target Start/End: Complemental strand, 26636416 - 26636225
Alignment:
| Q |
26 |
ttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgagattt |
125 |
Q |
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||||||| |||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26636416 |
ttgtcttgcccattccttcggttccaaggattcctattatgcagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgagattt |
26636317 |
T |
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| Q |
126 |
gagtccaactaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcgcgttcat |
217 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
26636316 |
gagtccaacaaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcacgttcat |
26636225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 26 - 217
Target Start/End: Complemental strand, 26742382 - 26742191
Alignment:
| Q |
26 |
ttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgagattt |
125 |
Q |
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||||||| |||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26742382 |
ttgtcttgcccattccttcggttccaaggattcctattatgcagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgagattt |
26742283 |
T |
|
| Q |
126 |
gagtccaactaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcgcgttcat |
217 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
26742282 |
gagtccaacaaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcacgttcat |
26742191 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 22 - 217
Target Start/End: Complemental strand, 26950517 - 26950322
Alignment:
| Q |
22 |
agtgttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgag |
121 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||| | || ||||| ||| |||||| ||||||||||||||||||| |
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| T |
26950517 |
agtgttgtctttcccattcccccagttccaaggattcctatcatgcagactccatcgtttgatcccaactctgaaagtgaattcacttctgatattcgag |
26950418 |
T |
|
| Q |
122 |
atttgagtccaactaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcgcgttcat |
217 |
Q |
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|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26950417 |
atttgagtccaacaaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcgcgttcat |
26950322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 22 - 217
Target Start/End: Complemental strand, 26959900 - 26959705
Alignment:
| Q |
22 |
agtgttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgag |
121 |
Q |
| |
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||||||||||| |||||||| |||||||||||||||||||| ||| |||||||||| | || ||||| ||| |||||| ||||||| ||||||||||| |
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| T |
26959900 |
agtgttgtctttcccattcctccagttccaaggattcctatcatgcagactccatcgtttgatcccaactctgaaagtgaattcacttttgatattcgag |
26959801 |
T |
|
| Q |
122 |
atttgagtccaactaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcgcgttcat |
217 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||| |||||| ||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||| |
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| T |
26959800 |
atttgagaccaacaaggtaatcagcaacatgtaaaggaacatggttaatcttgttggagacgtctgtaactattttttcaataaaatcacgttcat |
26959705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 22 - 206
Target Start/End: Original strand, 27664613 - 27664797
Alignment:
| Q |
22 |
agtgttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgag |
121 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||||||| |||||||||| ||| | ||||||||||||||||| ||||||||||||||||||| |
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| T |
27664613 |
agtgttgtcttacccagacctccagttccaaggattcctattatgtagactccatcggtacatcccaagtctagaagtgaattcacttctgatattcgag |
27664712 |
T |
|
| Q |
122 |
atttgagtccaactaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaa |
206 |
Q |
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|
||| ||||||||| ||||| ||||||||||||| | || |||||||||||| |||||||||||||||||||| ||||||||| |
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| T |
27664713 |
attcgagtccaacaaggtactcagcaacatgtaaatgacaacggttgatcttgttggagacgtctgtaactatttcttcaataaa |
27664797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 22 - 217
Target Start/End: Complemental strand, 26849486 - 26849291
Alignment:
| Q |
22 |
agtgttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgag |
121 |
Q |
| |
|
|||||||| || |||||||| ||||||||||||||||||||| | ||||||||||| |||| |||| ||||||||||| ||||||||||||||||||| |
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| T |
26849486 |
agtgttgtttttcccattcctccagttccaaggattcctattttccagactccatcattagattccaattctagaagtgaattcacttctgatattcgag |
26849387 |
T |
|
| Q |
122 |
atttgagtccaactaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcgcgttcat |
217 |
Q |
| |
|
|||| |||||||| ||||||||||||||||| | |||||| ||||||||||||| |||||| || |||||||||| ||||||||| | |||||| |
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| T |
26849386 |
atttaagtccaacaaggtaatcagcaacatgcaaaggaacatggttgatcttgttggagacatccttaactattttcccaataaaatggtgttcat |
26849291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 25 - 217
Target Start/End: Complemental strand, 25074638 - 25074449
Alignment:
| Q |
25 |
gttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgagatt |
124 |
Q |
| |
|
|||||||| |||||||| |||||||||| ||||||||||||| | ||||||| || | ||||||||||||||||| ||||||||||| ||||||||| |
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| T |
25074638 |
gttgtcttgcccattccaccagttccaacgattcctattatgcatactccat---tatatcccaagtctagaagtgaattcacttctgaaattcgagatc |
25074542 |
T |
|
| Q |
125 |
tgagtccaactaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcgcgttcat |
217 |
Q |
| |
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|| ||||| |||||||||| |||||||| ||||| ||||| ||||||| |||||||||| |||||||||||||||||||||| ||||||| |
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| T |
25074541 |
gaagaccaacaaggtaatcagtaacatgtaaaggaatttggttaatcttgttggagacgtctctaactattttttcaataaaatcacgttcat |
25074449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 115 - 217
Target Start/End: Complemental strand, 31288986 - 31288884
Alignment:
| Q |
115 |
attcgagatttgagtccaactaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcgcgtt |
214 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||||| |||||| ||||| ||||||| |||||| |||||||||||||||||||||||||| |||| |
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| T |
31288986 |
attcgagatttgagaccaacaaggtaatcagcaacatgtaaaggaacatggttaatcttgttggagacatctgtaactattttttcaataaaatctcgtt |
31288887 |
T |
|
| Q |
215 |
cat |
217 |
Q |
| |
|
||| |
|
|
| T |
31288886 |
cat |
31288884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 31289042 - 31288986
Alignment:
| Q |
22 |
agtgttgtcttacccattcccccagttccaaggattcctattatgaagactccatca |
78 |
Q |
| |
|
|||||||| |||||| |||| ||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
31289042 |
agtgttgttttaccccttcctccagttccaagtattcctattatgcagactccatca |
31288986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 25 - 217
Target Start/End: Original strand, 17992626 - 17992818
Alignment:
| Q |
25 |
gttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgagatt |
124 |
Q |
| |
|
|||||||| |||||||| ||||| |||||||||||||||||| |||| |||||| || | |||||||||||||||| |||||||||||||||||||||| |
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| T |
17992626 |
gttgtcttgcccattccaccagtaccaaggattcctattatgcagacaccatcattatattccaagtctagaagtgaattcacttctgatattcgagatt |
17992725 |
T |
|
| Q |
125 |
tgagtccaactaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcgcgttcat |
217 |
Q |
| |
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|||| |||| |||||||| |||||||||| ||||||||||| ||||||| ||| ||||||||||||||||||||||||||| ||||||| |
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| T |
17992726 |
tgagaccaataaggtaatcggcaacatgtaatggaacgtggttaatcttgttggaagtgtctgtaactattttttcaataaaatcacgttcat |
17992818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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