View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10865A_low_44 (Length: 408)
Name: NF10865A_low_44
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865A_low_44 |
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Alignment Details
Target: chr1 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 7 - 396
Target Start/End: Complemental strand, 28754380 - 28753991
Alignment:
| Q |
7 |
atttcaatgtgaaagacttgttatcgaaaaattgtcatggtcgtgaaacttcgtgtgagttgaaacagccagtctttctatcagatgcacaagtaaatgt |
106 |
Q |
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| T |
28754380 |
atttcaatgtgaaagacttgttatcgaaaaattgtcatggtcgtgaaacttcgtgtgagttgaaacagccagtctttctatcagatgcacaagtaaatgt |
28754281 |
T |
|
| Q |
107 |
gattcagaatcaaaccacatgcatcaatatgtctggagcagctatatccgagaatattcaatatgattgtcgcggttttgatcttgttggtcttaattct |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
28754280 |
gattcagaatcaaaccacatgcatcaatatgtctggagcagctatatctgagaatattcaatatgattgttgcggttttgatcttgttggtcttaattct |
28754181 |
T |
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| Q |
207 |
tgcaaaaacgctcaggaggatagtgtgcttagggaatcagagtcatctgaagctaattaccgtgtatctgatttagtatggggaaaggttaggagccatc |
306 |
Q |
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||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28754180 |
tgcaaaaacgctcaggaggatagcgtgcctagggaatcagagtcatctgaagctaattaccgtgtatctgatttagtatggggaaaggttaggagccatc |
28754081 |
T |
|
| Q |
307 |
cttggtggcctggtcagatctatgatccctcggttgcatcggagaaagcaaagaagcagcgtaaggaaaactgttacctgatagcatatt |
396 |
Q |
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| T |
28754080 |
cttggtggcctggtcagatctatgatcccttggttgcatcggagaaagcaaagaagcagcgtaaggaaaactgttacctgatagcatatt |
28753991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 108; Significance: 4e-54; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 66 - 396
Target Start/End: Original strand, 44864477 - 44864810
Alignment:
| Q |
66 |
ttgaaacagccagtctttctatcagatgcacaagtaaatgtgattcagaatcaaaccacatgcatcaatatgtctggagcagctatatccgagaatattc |
165 |
Q |
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| T |
44864477 |
ttgaaacagccagactttatgtcagttgatcaagtaaatgtgattcaagacaaaaccacatacatcaatatttctggagcaggtatcccgcataatagtc |
44864576 |
T |
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| Q |
166 |
aatatgattgtcgcggttttgatcttgttgg---tcttaattcttgcaaaaacgctcaggaggatagtgtgcttagggaatcagagtcatctgaagctaa |
262 |
Q |
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|||| ||||| || ||| |||||||||||| |||||||||| ||||||| | ||||||||| |||||| | | |||| | || || || | ||| |
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| T |
44864577 |
aatacgattgccgtggtattgatcttgttgtagatcttaattctaacaaaaacccacaggaggatggtgtgcccacgaaatctgtgttttccgatgttaa |
44864676 |
T |
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| Q |
263 |
ttaccgtgtatctgatttagtatggggaaaggttaggagccatccttggtggcctggtcagatctatgatccctcggttgcatcggagaaagcaaagaag |
362 |
Q |
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||| ||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||| || | |
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| T |
44864677 |
ttatcgtgtatctgatttagtttggggaaaggttcggggccatccttggtggcctggtcagatctatgatccctccgttgcatcagagaaggcaaggatg |
44864776 |
T |
|
| Q |
363 |
cagcgtaaggaaaactgttacctgatagcatatt |
396 |
Q |
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|| ||||||||| ||||||||||||||||||| |
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| T |
44864777 |
cactttaaggaaaattgttacctgatagcatatt |
44864810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 66 - 396
Target Start/End: Complemental strand, 45248082 - 45247761
Alignment:
| Q |
66 |
ttgaaacagccagtctttctatcagatgcacaagtaaatgtgattcagaatcaaaccacatgcatcaatatgtctggagcagctatatccgag-aatatt |
164 |
Q |
| |
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||||||||| || |||||| |||||||||||| ||||||||||||| | ||||||||| ||||| ||| |||||||||| ||| ||||| |||||| |
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| T |
45248082 |
ttgaaacagtcaagctttctgtcagatgcacaactaaatgtgattcaagaccaaaccacaaacatcagtatttctggagcaggtat-tccgaataatatt |
45247984 |
T |
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| Q |
165 |
caatatgattgtcgcggttttgatcttgttggtcttaattcttgcaaaaacgctcaggaggatagtgtgcttagggaatcagagtcatctgaagctaatt |
264 |
Q |
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|||||||||||||| |||||||||||| ||||| ||||||| | || |||||||| |||| |||||||||| || || || | ||||| |
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| T |
45247983 |
caatatgattgtcgaggttttgatctt---------aattcaaacaaaaacacacaagaggatagggtgcctagggaatcaatgttttcagatgttaatt |
45247893 |
T |
|
| Q |
265 |
accgtgtatctgatttagtatggggaaaggttaggagccatccttggtggcctggtcagatctatgatccctcggttgcatcggagaaagcaaagaagca |
364 |
Q |
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||||||||||||||||||| ||||||||||||||| | ||| ||||||||||||||||||| |||| |||||| |||||||| | ||| || |||| ||| |
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| T |
45247892 |
accgtgtatctgatttagtctggggaaaggttaggggacattcttggtggcctggtcagatatatgttccctcagttgcatcagtgaaggcgaagaggca |
45247793 |
T |
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| Q |
365 |
gcgtaaggaaaactgttacctgatagcatatt |
396 |
Q |
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|||||| ||||||||||||||||||||||| |
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| T |
45247792 |
ctgtaagggaaactgttacctgatagcatatt |
45247761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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