View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10865A_low_441 (Length: 211)
Name: NF10865A_low_441
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865A_low_441 |
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Alignment Details
Target: chr4 (Bit Score: 154; Significance: 7e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 21 - 185
Target Start/End: Original strand, 54912876 - 54913041
Alignment:
| Q |
21 |
ctgttgtattaataaaagcatgcaaaattgtatataagg-attaagaaaagaaacctcatgatattgacacgaagatgagctctaagctcaatgaagagg |
119 |
Q |
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| T |
54912876 |
ctgttgtattaataaaagcatgcaaaattgtatataagggattaagaaaagaaacctcatgatattgacacgaagatgagctctaagctcaatgaagagg |
54912975 |
T |
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| Q |
120 |
tcacgcatctgacccaaatcagcagcattaccatgagagtacaatacagtaaaccttgcaaaaggg |
185 |
Q |
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| T |
54912976 |
tcacgcatctgacccaaatcagcagcattaccatgagagtacaatatagtaaaccttgcaaaaggg |
54913041 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 160
Target Start/End: Original strand, 11464684 - 11464742
Alignment:
| Q |
102 |
ctaagctcaatgaagaggtcacgcatctgacccaaatcagcagcattaccatgagagta |
160 |
Q |
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| T |
11464684 |
ctaagctcaatgaaaagctcatacatctgacccagatcagcagcgttgccatgagagta |
11464742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 157
Target Start/End: Original strand, 7338061 - 7338093
Alignment:
| Q |
125 |
catctgacccaaatcagcagcattaccatgaga |
157 |
Q |
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| T |
7338061 |
catctgacccaaatcagcagcatttccatgaga |
7338093 |
T |
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