View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10865A_low_450 (Length: 208)
Name: NF10865A_low_450
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865A_low_450 |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 22 - 194
Target Start/End: Original strand, 7839615 - 7839787
Alignment:
| Q |
22 |
ctaagagcacaaactctttccaaagcagacctccatttcttcaccttctccgattcctttccaaatctcttttcatgttgaatcattgcaatttcatagc |
121 |
Q |
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| T |
7839615 |
ctaagagcacaaactcttttcaaagcagacctccatttcttcaccttctccgattcctttccaaatctcttttcatgttgaatcattgcaatttcatagc |
7839714 |
T |
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| Q |
122 |
tctttctttgatgtctaacatcagaagcttccaccttataaaatataacaaaaacagttttccctttcatctc |
194 |
Q |
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| T |
7839715 |
tctttctctgatgtctaacatcagaagcttccaccttataaaatataacaaaaacagttttccctttcatctc |
7839787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 25 - 173
Target Start/End: Original strand, 7762949 - 7763098
Alignment:
| Q |
25 |
agagcacaaactctttccaaagcagacctccatttcttcaccttctccgattcctttccaaatctcttttcatgttgaatcattgcaatttcatagctct |
124 |
Q |
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| T |
7762949 |
agagcacaaacacgattcaaagccaacctccatgctttcaccttctccgattcctttccaaatctattttcatgtttcatcattgcaatttcataactat |
7763048 |
T |
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| Q |
125 |
ttctttga-tgtctaacatcagaagcttccaccttataaaatataacaaa |
173 |
Q |
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| T |
7763049 |
tcctctgactacctaacatctgaaggttctatcttataaaaaataacaaa |
7763098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 100
Target Start/End: Original strand, 7755532 - 7755571
Alignment:
| Q |
61 |
ttcaccttctccgattcctttccaaatctcttttcatgtt |
100 |
Q |
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| T |
7755532 |
ttcaccttctccgattcccttccaaatctcttttcatgtt |
7755571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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