View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10865A_low_451 (Length: 207)
Name: NF10865A_low_451
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865A_low_451 |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 10265537 - 10265368
Alignment:
| Q |
1 |
aagcaaatcgaaaattaaatatgatgcatcgcgatttattcaaccaacacaacatcaagatcatagaatttttattcataatttggagaacaaaaacact |
100 |
Q |
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| T |
10265537 |
aagcaaatcgaaaattaaatatgatgcatcacgatttattcaaccaacacaacatcaagatcatagaatttttattcataatttggagaacaaaaacact |
10265438 |
T |
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| Q |
101 |
atttcattctccgtttttcacttacattcttatcataccaagagcattgtaaacaacttattgaaatgaa |
170 |
Q |
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| T |
10265437 |
atttcattctccgtttttcactcacattcttatcataccaagagcattgtaaacaacttattgaaatgaa |
10265368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 10284543 - 10284374
Alignment:
| Q |
1 |
aagcaaatcgaaaattaaatatgatgcatcgcgatttattcaaccaacacaacatcaagatcatagaatttttattcataatttggagaacaaaaacact |
100 |
Q |
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| T |
10284543 |
aagcaaatcgaaacttaaatatgatgcatcacgatttattcaaccaacaaaacatcaagatcatagaatttttattcataatttggagaacaaaaacact |
10284444 |
T |
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| Q |
101 |
atttcattctccgtttttcacttacattcttatcataccaagagcattgtaaacaacttattgaaatgaa |
170 |
Q |
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| T |
10284443 |
atttcattctccgtttttcactcacattcttatcataccaagagcattgtaaacaacttattgaaatgaa |
10284374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 23 - 188
Target Start/End: Complemental strand, 10255195 - 10255027
Alignment:
| Q |
23 |
gatgcatcgcgatttattcaaccaacacaacatcaagatcatagaatttttattcataatttggagaacaaaa--acactattt-cattctccgtttttc |
119 |
Q |
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|||| ||| ||||||| ||||||||||||||||| | ||||||||| | ||||||||||||| || | |||| ||||||||| | ||||| ||||||| |
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| T |
10255195 |
gatgtatcacgatttagtcaaccaacacaacatctaaatcatagaaatcttattcataatttcgaatagaaaagcacactattttctttctctgtttttc |
10255096 |
T |
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| Q |
120 |
acttacattcttatcataccaagagcattgtaaacaacttattgaaatgaaaattacaagaatatatat |
188 |
Q |
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||| | |||||||||||| |||||| ||||||||||| |||||||||||| |||||| |||||||||| |
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| T |
10255095 |
actcatattcttatcatagcaagagtattgtaaacaaagtattgaaatgaagattacatgaatatatat |
10255027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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