View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10865A_low_459 (Length: 203)

Name: NF10865A_low_459
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10865A_low_459
NF10865A_low_459
[»] chr3 (8 HSPs)
chr3 (15-184)||(41985680-41985852)
chr3 (15-182)||(41980906-41981073)
chr3 (16-79)||(9695616-9695679)
chr3 (16-76)||(9646367-9646427)
chr3 (16-76)||(9655360-9655420)
chr3 (31-79)||(9686751-9686799)
chr3 (16-79)||(9416626-9416689)
chr3 (17-79)||(9329890-9329952)
[»] chr8 (2 HSPs)
chr8 (19-184)||(13170579-13170744)
chr8 (15-184)||(44688680-44688849)
[»] chr1 (2 HSPs)
chr1 (97-184)||(18991335-18991422)
chr1 (15-56)||(8814385-8814426)
[»] chr5 (1 HSPs)
chr5 (17-65)||(18571165-18571213)
[»] chr6 (4 HSPs)
chr6 (16-79)||(7041549-7041612)
chr6 (16-61)||(7025809-7025854)
chr6 (16-61)||(7029866-7029911)
chr6 (17-61)||(7046893-7046937)
[»] chr7 (1 HSPs)
chr7 (33-79)||(450111-450157)
[»] chr2 (1 HSPs)
chr2 (40-76)||(20694304-20694340)


Alignment Details
Target: chr3 (Bit Score: 151; Significance: 4e-80; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 15 - 184
Target Start/End: Original strand, 41985680 - 41985852
Alignment:
Q  15 tctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaagctttaaaccatcttcaccagggaaaccaaaacaa 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  41985680 tctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaagctttaaaccatcttcaccggggaaaccaaaacaa 41985779  T
Q  115 tgagagtcatatatgtctactagcaacaac---tcacgctcactctctaccaggaatttcatgtcccctccat 184  Q
    ||||||||||||||||||||||||||||||   |||| |||||||||||||||||||||||||||||||||||    
T  41985780 tgagagtcatatatgtctactagcaacaactgatcaccctcactctctaccaggaatttcatgtcccctccat 41985852  T

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Target: chr3; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 15 - 182
Target Start/End: Original strand, 41980906 - 41981073
Alignment:
Q  15 tctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaagctttaaaccatcttcaccagggaaaccaaaacaa 114  Q
    ||||||||||||||||| ||||||||||||||||||||| |||| | |||| || ||||||||||| || |||||||||||||||||||| |||| ||||    
T  41980906 tctatcccctaaactcgtcaacttgacccatttcttctctttcttagcaagcctaaacacatcaagattgaaaccatcttcaccagggaacccaacacaa 41981005  T
Q  115 tgagagtcatatatgtctactagcaacaactcacgctcactctctaccaggaatttcatgtcccctcc 182  Q
    ||||||| ||| ||||| |||||||| || |||| |||||||||||||||||||||||  ||||||||    
T  41981006 tgagagtgataaatgtccactagcaataattcaccctcactctctaccaggaatttcacatcccctcc 41981073  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 9695679 - 9695616
Alignment:
Q  16 ctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 79  Q
    |||||||||||| | | |||||||||||| |||||||||||||||||||| ||||| |||||||    
T  9695679 ctatcccctaaattggtcaacttgacccacttcttctccttctcatcaagcctgaatacatcaa 9695616  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 9646427 - 9646367
Alignment:
Q  16 ctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacat 76  Q
    |||||||||||| ||  |||||| |||||||||||||||||||||| || |||||| ||||    
T  9646427 ctatcccctaaattcatcaacttcacccatttcttctccttctcatgaaatctgaaaacat 9646367  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 9655420 - 9655360
Alignment:
Q  16 ctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacat 76  Q
    |||||||||||| ||  |||||| |||||||||||||||||||||| || |||||| ||||    
T  9655420 ctatcccctaaattcatcaacttcacccatttcttctccttctcatgaaatctgaaaacat 9655360  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 79
Target Start/End: Original strand, 9686751 - 9686799
Alignment:
Q  31 gccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 79  Q
    |||||||||||||| |||||||| ||||||||||| ||||| |||||||    
T  9686751 gccaacttgacccacttcttctcgttctcatcaagcctgaatacatcaa 9686799  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 9416626 - 9416689
Alignment:
Q  16 ctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 79  Q
    |||||||||||||||| |||||| |||||||| || | |||||| ||||| | |||||||||||    
T  9416626 ctatcccctaaactcgtcaacttcacccattttttattcttctcgtcaagacagaacacatcaa 9416689  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 9329890 - 9329952
Alignment:
Q  17 tatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 79  Q
    |||| |||||| ||||||||||||||||  | ||||| ||||||||||| || ||||||||||    
T  9329890 tatctcctaaattcgccaacttgacccaccttttctctttctcatcaagcctaaacacatcaa 9329952  T

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Target: chr8 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 19 - 184
Target Start/End: Complemental strand, 13170744 - 13170579
Alignment:
Q  19 tcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaagctttaaaccatcttcaccagggaaaccaaaacaatgag 118  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||  ||| |||||    
T  13170744 tcccctaaactcgccaacttgacccatttcttctccttttcatcaagtctgaacacatcaagctttaaaccatattcaccagggaaaccgtaacgatgag 13170645  T
Q  119 agtcatatatgtctactagcaacaactcacgctcactctctaccaggaatttcatgtcccctccat 184  Q
     |||||| ||||| |||||||||||||||| ||| ||||| |||| ||||||||||||||||||||    
T  13170644 ggtcatagatgtccactagcaacaactcaccctcgctctcgaccaagaatttcatgtcccctccat 13170579  T

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Target: chr8; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 15 - 184
Target Start/End: Complemental strand, 44688849 - 44688680
Alignment:
Q  15 tctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaagctttaaaccatcttcaccagggaaaccaaaacaa 114  Q
    ||||| |||||||||||  ||||| ||||||||||| | ||||||||  ||  ||||||||||||||  || |||||||||||| ||||| ||||||| |    
T  44688849 tctattccctaaactcgttaactttacccatttcttatgcttctcattgagcgtgaacacatcaagccgtagaccatcttcacccgggaacccaaaacca 44688750  T
Q  115 tgagagtcatatatgtctactagcaacaactcacgctcactctctaccaggaatttcatgtcccctccat 184  Q
    ||||||||||| ||||| ||||||||||||||||  |||||||||||||||||||| |||||||||||||    
T  44688749 tgagagtcatagatgtccactagcaacaactcaccttcactctctaccaggaattttatgtcccctccat 44688680  T

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Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 97 - 184
Target Start/End: Original strand, 18991335 - 18991422
Alignment:
Q  97 ccagggaaaccaaaacaatgagagtcatatatgtctactagcaacaactcacgctcactctctaccaggaatttcatgtcccctccat 184  Q
    |||||||| ||||||||||| |||||| | ||||| ||||||||||||||||  |||| |||||||| ||||||||| ||||||||||    
T  18991335 ccagggaacccaaaacaatgcgagtcacagatgtccactagcaacaactcaccttcacactctaccaagaatttcatatcccctccat 18991422  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 8814426 - 8814385
Alignment:
Q  15 tctatcccctaaactcgccaacttgacccatttcttctcctt 56  Q
    ||||||||||||| |||||||||| ||||| |||||||||||    
T  8814426 tctatcccctaaattcgccaacttcacccacttcttctcctt 8814385  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 18571165 - 18571213
Alignment:
Q  17 tatcccctaaactcgccaacttgacccatttcttctccttctcatcaag 65  Q
    ||||||||||||||| ||| || ||||| ||||||||||||||||||||    
T  18571165 tatcccctaaactcgtcaatttcacccacttcttctccttctcatcaag 18571213  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 7041549 - 7041612
Alignment:
Q  16 ctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 79  Q
    |||||||||||||| | |||||| ||||| |||||||||||||||| |||| | |||| |||||    
T  7041549 ctatcccctaaactagtcaacttcacccacttcttctccttctcattaagtttaaacaaatcaa 7041612  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 7025809 - 7025854
Alignment:
Q  16 ctatcccctaaactcgccaacttgacccatttcttctccttctcat 61  Q
    ||||| |||||||||| |||||| ||||| ||||||||||||||||    
T  7025809 ctatctcctaaactcgtcaacttcacccacttcttctccttctcat 7025854  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 7029866 - 7029911
Alignment:
Q  16 ctatcccctaaactcgccaacttgacccatttcttctccttctcat 61  Q
    |||||||| ||||||| |||||| ||||| ||||||||||||||||    
T  7029866 ctatccccgaaactcgtcaacttcacccacttcttctccttctcat 7029911  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 7046893 - 7046937
Alignment:
Q  17 tatcccctaaactcgccaacttgacccatttcttctccttctcat 61  Q
    |||||||||||||||  ||||| ||||| ||||||||||||||||    
T  7046893 tatcccctaaactcgttaacttcacccacttcttctccttctcat 7046937  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 79
Target Start/End: Complemental strand, 450157 - 450111
Alignment:
Q  33 caacttgacccatttcttctccttctcatcaagtctgaacacatcaa 79  Q
    |||||||||||| || ||||||||||||||||| || ||||||||||    
T  450157 caacttgacccactttttctccttctcatcaagcctaaacacatcaa 450111  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 76
Target Start/End: Complemental strand, 20694340 - 20694304
Alignment:
Q  40 acccatttcttctccttctcatcaagtctgaacacat 76  Q
    ||||||||||||||||| |||||||| ||||||||||    
T  20694340 acccatttcttctccttttcatcaagcctgaacacat 20694304  T

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