View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10865A_low_49 (Length: 401)
Name: NF10865A_low_49
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865A_low_49 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 20 - 384
Target Start/End: Original strand, 3819114 - 3819478
Alignment:
| Q |
20 |
ctatgaacagaccaactcacaccttctttcttccctgtttcttcaaacaaaacatcttcaagtgtataatagaaattatgataatccaaacgcggcatat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3819114 |
ctatgaacagaccaactcacaccttctttcttacctgtttcttcaaacaaaacatcttcaagtgtataatagaaattatgataatccaaacgcggcatat |
3819213 |
T |
|
| Q |
120 |
cctctgtgtatggtggttcatggtacttgatcttgccaaatgattcaaagggtcctacatagtgcttaccgccggtttggattgacacatgtcggagatt |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
3819214 |
cctctgtgtatggtggttcatggtacttgatcttgccgaatgattcaaagggtcctacatagtgcttaccgccggtttgaattgacacatgacggagatt |
3819313 |
T |
|
| Q |
220 |
gggagcgtttggaatgactgcagtgaggacgtttttgagcatagtgccgttgatttcacagttttcagcttcggtgggacggctggcccaacagacgtag |
319 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3819314 |
gggagcgtttggaatgactgcagtgagggcgtttttgagcatagtgccgttgatttcacagttttcagcttcggtgggacggctggcccaacagacgtag |
3819413 |
T |
|
| Q |
320 |
aagacatgggtaacgtcagtgaggacggagagtttggtggtggcgtcgtttggatcggtgatgtc |
384 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3819414 |
aagacatgggtaacgtcagtgaggacggagagtttggtggtggcgtcgtttggatcggtgatgtc |
3819478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 20 - 384
Target Start/End: Complemental strand, 47338763 - 47338399
Alignment:
| Q |
20 |
ctatgaacagaccaactcacaccttctttcttccctgtttcttcaaacaaaacatcttcaagtgtataatagaaattatgataatccaaacgcggcatat |
119 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47338763 |
ctatgaacagaccaactcacgccttctttcttccctgtttcttcaaacaaaacatcttcaagtgtataatagaaattatgataatccaaacgcggcatat |
47338664 |
T |
|
| Q |
120 |
cctctgtgtatggtggttcatggtacttgatcttgccaaatgattcaaagggtcctacatagtgcttaccgccggtttggattgacacatgtcggagatt |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
47338663 |
cctctgtgtatggtggttcatggtacttgatcttgccgaatgattcaaagggtcctacatagtgcttaccgccggtttgaattgacacatgacggagatt |
47338564 |
T |
|
| Q |
220 |
gggagcgtttggaatgactgcagtgaggacgtttttgagcatagtgccgttgatttcacagttttcagcttcggtgggacggctggcccaacagacgtag |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47338563 |
gggagcgtttggaatgactgcagtgaggacgtttttgagcatagcgccgttgatttcacagttttcagcttcggtgggacggctggcccaacagacgtag |
47338464 |
T |
|
| Q |
320 |
aagacatgggtaacgtcagtgaggacggagagtttggtggtggcgtcgtttggatcggtgatgtc |
384 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47338463 |
aagacatgtgtaacgtcagtgaggacggagagtttggtggtggcgtcgtttggatcggtgatgtc |
47338399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 20 - 384
Target Start/End: Complemental strand, 47347233 - 47346869
Alignment:
| Q |
20 |
ctatgaacagaccaactcacaccttctttcttccctgtttcttcaaacaaaacatcttcaagtgtataatagaaattatgataatccaaacgcggcatat |
119 |
Q |
| |
|
||||||||||||||||||| ||| |||||||| |||||||||||||||| |||||| | || ||||||||||| | ||| |||||||| | || |
|
|
| T |
47347233 |
ctatgaacagaccaactcaaaccctctttcttttgagtttcttcaaacaaaatatcttcctgagtgtaatagaaatttggcgcatctaaacgcggtaaat |
47347134 |
T |
|
| Q |
120 |
cctctgtgtatggtggttcatggtacttgatcttgccaaatgattcaaagggtcctacatagtgcttaccgccggtttggattgacacatgtcggagatt |
219 |
Q |
| |
|
|||| ||| | || || ||||| || ||||| || | ||||| ||||||| |||||| || || |||||||| | |||||| || |||||||| |
|
|
| T |
47347133 |
cctccgtgaacggcggctcatgactattaatcttcccgatcagatcaaacggtcctaaatagtgttttccaccggtttgaagtgacacgtggcggagatt |
47347034 |
T |
|
| Q |
220 |
gggagcgtttggaatgactgcagtgaggacgtttttgagcatagtgccgttgatttcacagttttcagcttcggtgggacggctggcccaacagacgtag |
319 |
Q |
| |
|
|| |||||||| || || || ||||| ||||| | ||| | || ||||| |||||||||||| ||||| | ||||||| | |||| |||||||| |
|
|
| T |
47347033 |
cggtgcgtttgggataacggcggtgagtacgttacgtaacattgcgctgttgacttcacagttttcggcttcagagggacggttactccaagagacgtag |
47346934 |
T |
|
| Q |
320 |
aagacatgggtaacgtcagtgaggacggagagtttggtggtggcgtcgtttggatcggtgatgtc |
384 |
Q |
| |
|
|||| || || ||||||||||| |||||||||||||| || |||||||||||||||||||| |
|
|
| T |
47346933 |
aagatgtgtgtgacgtcagtgagaacggagagtttggtttgggtttcgtttggatcggtgatgtc |
47346869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 47349772 - 47349696
Alignment:
| Q |
20 |
ctatgaacagaccaactcacaccttctttcttccctgtttcttcaaacaaaacatcttcaagtgtataatagaaatt |
96 |
Q |
| |
|
||||||||||||||||||| ||| |||||||| |||||||||||||| | |||||| | || ||||||||||| |
|
|
| T |
47349772 |
ctatgaacagaccaactcaaaccctctttctttttggtttcttcaaacaagatatcttcctgagtgtaatagaaatt |
47349696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University