View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10865A_low_50 (Length: 401)
Name: NF10865A_low_50
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865A_low_50 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 12 - 395
Target Start/End: Original strand, 7733620 - 7734004
Alignment:
| Q |
12 |
atgaaacatcatgtacaacacctcaatgactaaaccatagatttcattcttcatcgatcacttgagcccaatattgaagaatcatcgatcgaaacagacc |
111 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7733620 |
atgaaacatcatgtacaacgcttcaatgactaaaccatagatttcattcttcatcgatcacttgagcccaatattgaagaatcatcgatcgaaacagacc |
7733719 |
T |
|
| Q |
112 |
ttcactaacttccagacgaattcttaccaacgcctagaaaggcatcattcattacaaaagcaatgtacaccatttctattatttcaatacctcacactct |
211 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
7733720 |
ttcactaacttccagacgacttcttaccaatgcctagaaaggcctcattcattacaaaagcaatgtacaccatttctattatttcaatgcctcacactct |
7733819 |
T |
|
| Q |
212 |
ttgttttcatattgacttgagtatccatcttagttttattttggagaggatataatttagtttttggttattaactttgtgtttataaaatattataa-n |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
7733820 |
ttgttttcatattgacttgagtatccatcttagttttattttggagcggatgtaatttagtttttggttattaactttgtgtttataacatattataatt |
7733919 |
T |
|
| Q |
311 |
nnnnnnaaacaatacaagcggaaagacggacacctgagtatctatctttccgctctttttattgcgtcaatgcgtataaattttc |
395 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
7733920 |
ttttttaaacaatacaagcggaaagacggacacctgaatatccatctttctgctctttttattgcgtcaatgcgtataaattttc |
7734004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 359 - 392
Target Start/End: Complemental strand, 48458269 - 48458236
Alignment:
| Q |
359 |
tccgctctttttattgcgtcaatgcgtataaatt |
392 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |
|
|
| T |
48458269 |
tccgctctttttattgcgttaatgcgtataaatt |
48458236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University