View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10865A_low_54 (Length: 392)
Name: NF10865A_low_54
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865A_low_54 |
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Alignment Details
Target: chr8 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 7 - 386
Target Start/End: Original strand, 10148531 - 10148910
Alignment:
| Q |
7 |
ctggacctaagtcactaacctaactgcaaagaattttggtttgtgtcnnnnnnnnnnnnngaatattaaggcagctccacgtgactgttaaccaatgaga |
106 |
Q |
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| T |
10148531 |
ctggacctaagtcactaacctaactgcaaagaattttggtttgtgtcaaaaaagaaaaaagaatattaaggcagctccacgtgactgttaaccaatgaga |
10148630 |
T |
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| Q |
107 |
atgattctatgaacataagttaaagatatgcacatggtgcacaattggtcagcatctaataaggtacgggcaattaaacaaatagcaagatgaagaagaa |
206 |
Q |
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| T |
10148631 |
atgattctatgaacataagttaaagatatgcacatggtgcacaattggtcagcatctaataaggtacgggcaattaaacaaatagcaagatgaagaagaa |
10148730 |
T |
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| Q |
207 |
atatatttttatatgcactaatgattccatgatcaacgttttttcacaatgcaatgttgctgtcgttatggcttgtattttgagtannnnnnnnctttct |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |
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| T |
10148731 |
ttatatttttatatgcactaatgattccatgatcaacgttttttcacaatgtaatgttgctgtcgttatggcttgtattttgagtattttttttctttct |
10148830 |
T |
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| Q |
307 |
tttaatcttacattatggcttgaatagcctcacaacaatattcttcccagnnnnnnntgtaagtgaaattttgttcttca |
386 |
Q |
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| T |
10148831 |
tttaatcttacattatggcttgaatagcctcacaacaatattcttcccataaaaaaatgtaagtgaaattttgttcttca |
10148910 |
T |
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