View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10865A_low_58 (Length: 386)
Name: NF10865A_low_58
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865A_low_58 |
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Alignment Details
Target: chr2 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 380
Target Start/End: Complemental strand, 32898994 - 32898615
Alignment:
| Q |
1 |
aagaatatcaccaccaccgggaaaaggctgcgccgcggccgccgaggagaaaaagaaaggaagctgaagattatcttgtagtgatctcaagctaggaaaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32898994 |
aagaatatcaccaccaccgggaaaaggctgcgccgcggcggccgaggagaaaaagaaaggaagctgaagattatcttgtagtgatctcaagctaggaaaa |
32898895 |
T |
|
| Q |
101 |
gcagaaacaccgacattcctctgcaaccttgcaaaaggatccattgttgcattcctagaaggtgaaacgagatcaaaacttccattgttgttgccgttga |
200 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||| ||||| |
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| T |
32898894 |
gcagaaacaccgacattcctctgaaaccttgcaaaaggatccattgttgcattcatagaaggtgaaacaagatcaaaacttccattgctgttgctgttga |
32898795 |
T |
|
| Q |
201 |
agctgctgtgaacagagacaacatttgatgttgtagatgttgtggagaaacaggacacgtgctcctttagatcagtgttgttgttggagctgttgtagtt |
300 |
Q |
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|| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32898794 |
agttgttgtgaacagagacaacatttgatgttgtagatgttgtggagaaacaggacacgtgctcctttagatcagtgttgttgttggagctgttgtagtt |
32898695 |
T |
|
| Q |
301 |
acacatttgaccaccgttgaatgaggcggtgctagcggcagtgtagggagatgaatcaagaagaggtggaaggtaaactg |
380 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
32898694 |
acacatttgaccaccgttgaatgaggcggtgctagcggcggtgtagggagatgaatcaagaagaggtggaaggtaaactg |
32898615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 128 - 378
Target Start/End: Complemental strand, 17415196 - 17414958
Alignment:
| Q |
128 |
cttgcaaaaggatccattgttgcattcctagaaggtgaaacgagatcaaaacttccattgttgttgccgttgaagctgctgtgaacagagacaacatttg |
227 |
Q |
| |
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|||||||||||||| ||||| |||||| ||||||| ||||| |||||||| ||||||||||||||| ||||| || |||| ||| ||||||||||| |
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| T |
17415196 |
cttgcaaaaggatcaattgtagcattcatagaaggagaaacaagatcaaagcttccattgttgttgttactgaagttgttgtgggcagcgacaacatttg |
17415097 |
T |
|
| Q |
228 |
atgttgtagatgttgtggagaaacaggacacgtgctcctttagatcagtgttgttgttggagctgttgtagttacacatttgaccaccgttgaatgaggc |
327 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| | |||||||||| ||| |
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| T |
17415096 |
atgttgtagatgttgtggagaaacaggacacgtgctcctttagatcagtgtt------------gttggagttacacatttggtcgccgttgaatgtggc |
17415009 |
T |
|
| Q |
328 |
ggtgctagcggcagtgtagggagatgaatcaagaagaggtggaaggtaaac |
378 |
Q |
| |
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| |||||||||| ||||| |||||||||||||||||||||||||| ||||| |
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| T |
17415008 |
gatgctagcggcggtgtaaggagatgaatcaagaagaggtggaagataaac |
17414958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 128 - 378
Target Start/End: Original strand, 20409621 - 20409859
Alignment:
| Q |
128 |
cttgcaaaaggatccattgttgcattcctagaaggtgaaacgagatcaaaacttccattgttgttgccgttgaagctgctgtgaacagagacaacatttg |
227 |
Q |
| |
|
|||||||||||||| ||||| |||||| ||||||| ||||| |||||||| ||||||||||||||| ||||| || |||| || ||||||||||| |
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| T |
20409621 |
cttgcaaaaggatcaattgtagcattcatagaaggagaaacaagatcaaagcttccattgttgttgttactgaagttgttgtgggcaacgacaacatttg |
20409720 |
T |
|
| Q |
228 |
atgttgtagatgttgtggagaaacaggacacgtgctcctttagatcagtgttgttgttggagctgttgtagttacacatttgaccaccgttgaatgaggc |
327 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| | |||||||||| ||| |
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| T |
20409721 |
atgttgtagatgttgtggagaaacaggacacgtgctcctttagatcagtgt------------tgttggagttacacatttggtcgccgttgaatgtggc |
20409808 |
T |
|
| Q |
328 |
ggtgctagcggcagtgtagggagatgaatcaagaagaggtggaaggtaaac |
378 |
Q |
| |
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| |||||||||| ||||| |||||||||||||||||||||||||| ||||| |
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| T |
20409809 |
gatgctagcggcggtgtaaggagatgaatcaagaagaggtggaagataaac |
20409859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 128 - 378
Target Start/End: Complemental strand, 46312720 - 46312482
Alignment:
| Q |
128 |
cttgcaaaaggatccattgttgcattcctagaaggtgaaacgagatcaaaacttccattgttgttgccgttgaagctgctgtgaacagagacaacatttg |
227 |
Q |
| |
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|||||||||||||| ||||| |||||| ||||||| ||||| |||||||| ||||||||||||||| ||||| || |||| || ||||||||||| |
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| T |
46312720 |
cttgcaaaaggatcaattgtagcattcatagaaggagaaacaagatcaaagcttccattgttgttgttactgaagttgttgtgggcaacgacaacatttg |
46312621 |
T |
|
| Q |
228 |
atgttgtagatgttgtggagaaacaggacacgtgctcctttagatcagtgttgttgttggagctgttgtagttacacatttgaccaccgttgaatgaggc |
327 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| | |||||||||| ||| |
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| T |
46312620 |
atgttgtagatgttgtggagaaacaggacacgtgctcctttagatcagtgtt------------gttggagttacacatttggtcgccgttgaatgtggc |
46312533 |
T |
|
| Q |
328 |
ggtgctagcggcagtgtagggagatgaatcaagaagaggtggaaggtaaac |
378 |
Q |
| |
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| |||||||||| ||||| |||||||||||||||||||||||||| ||||| |
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| T |
46312532 |
gatgctagcggcggtgtaaggagatgaatcaagaagaggtggaagataaac |
46312482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 128 - 378
Target Start/End: Complemental strand, 40169283 - 40169054
Alignment:
| Q |
128 |
cttgcaaaaggatccattgttgcattcctagaaggtgaaacgagatcaaaacttccattgttgttgccgttgaagctgctgtgaacagagacaacatttg |
227 |
Q |
| |
|
|||||||||||||| ||||| |||||| ||||||| ||||| |||||||| ||||||||||||||| ||||| || |||| ||| ||||||||||| |
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| T |
40169283 |
cttgcaaaaggatcaattgtagcattcatagaaggagaaacaagatcaaagcttccattgttgttgttactgaagttgttgtgggcagcgacaacatttg |
40169184 |
T |
|
| Q |
228 |
atgttgtagatgttgtggagaaacaggacacgtgctcctttagatcagtgttgttgttggagctgttgtagttacacatttgaccaccgttgaatgaggc |
327 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||| | |||||||||| ||| |
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| T |
40169183 |
atgttgt---------ggagaaacaggacacgtgctcctttagatcggtgttgttgg------------agttacacatttggtcgccgttgaatgtggc |
40169105 |
T |
|
| Q |
328 |
ggtgctagcggcagtgtagggagatgaatcaagaagaggtggaaggtaaac |
378 |
Q |
| |
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| ||||||| || ||||| |||||||||||||||||||||||||| ||||| |
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|
| T |
40169104 |
gatgctagcagcggtgtaaggagatgaatcaagaagaggtggaagataaac |
40169054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 150 - 256
Target Start/End: Original strand, 46482987 - 46483093
Alignment:
| Q |
150 |
cattcctagaaggtgaaacgagatcaaaacttccattgttgttgccgttgaagctgctgtgaacagagacaacatttgatgttgtagatgttgtggagaa |
249 |
Q |
| |
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||||| ||||||| ||||| |||||||| |||||||||||||||| | ||||| || |||| ||||||||||||||||||||| ||||| |||||||||| |
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| T |
46482987 |
cattcgtagaaggagaaacaagatcaaagcttccattgttgttgctgctgaagttgttgtggacagagacaacatttgatgttctagatattgtggagaa |
46483086 |
T |
|
| Q |
250 |
acaggac |
256 |
Q |
| |
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| ||||| |
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|
| T |
46483087 |
ataggac |
46483093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 29 - 109
Target Start/End: Original strand, 46482880 - 46482960
Alignment:
| Q |
29 |
tgcgccgcggccgccgaggagaaaaagaaaggaagctgaagattatcttgtagtgatctcaagctaggaaaagcagaaaca |
109 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||| ||||||| |
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| T |
46482880 |
tgcgccgcggccgccgtggagaaaaagaaaggaagctggagattatcttgtagtgacctcaatctaggaaaaatagaaaca |
46482960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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