View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10865A_low_6 (Length: 523)
Name: NF10865A_low_6
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865A_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 11 - 278
Target Start/End: Complemental strand, 43239342 - 43239075
Alignment:
| Q |
11 |
atgaaaagctgccaagagccaattagcataagctgtgtagagtccaataacaaagagcaatatgataccccatgtccaacctaatggaaccattatcagg |
110 |
Q |
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| T |
43239342 |
atgaaaagctgccaagagccaattagcataagctgtgtagagtccaataacaaagagcaatatgataccccatgtccaacctaatggaaccattatcagg |
43239243 |
T |
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| Q |
111 |
ttagagaaactgaatatccaaccacagttgaagcctgtcaccaacatcaaccccacttgttgccatgaatctgcaaattgaatgaaacactcattaatga |
210 |
Q |
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| T |
43239242 |
ttagagaaactgaatatccaaccacagttgaagcctgtcaccaacatcaaccccacttgttgccatgaatctgcaaattgaatgaaacacccattaatga |
43239143 |
T |
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| Q |
211 |
tgttaacaattactaacaaaacagcatagaaaaatgtatgaatcatgtataagacaatagtttacatg |
278 |
Q |
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| T |
43239142 |
tgttaacaattactaacaaaacagcatagaaaaatgtatgaatcatgtataagacaatagtttacatg |
43239075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 309 - 517
Target Start/End: Complemental strand, 43239044 - 43238834
Alignment:
| Q |
309 |
cataatttaactgagaata-gagtaatatacctttgtcaatagtatgagcagtggaaagatcataagaatcatttgagatattcttgtcttcttgaccat |
407 |
Q |
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| T |
43239044 |
cataatttagctgagaataagagtaatatacctttgtcaatagtatgagcagtggaaaggtcataagaatcatttgagatattcttgtcttcttgaccat |
43238945 |
T |
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| Q |
408 |
gttctaggttgagagtgagagagttatcattgcttgctctaccttcaacctccatggtgaatatgttaactcattccaatttccaaaaacgcaaga-ttt |
506 |
Q |
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| T |
43238944 |
gttctaggttgagagtgagagagttatcattgcttgctctaccttcaacctccatggtgaatatgttaactcattccaatttccaaaaacgcaagagttt |
43238845 |
T |
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| Q |
507 |
ggtacacatat |
517 |
Q |
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| T |
43238844 |
ggtacacatat |
43238834 |
T |
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