View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10865A_low_7 (Length: 501)
Name: NF10865A_low_7
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865A_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 484; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 12 - 495
Target Start/End: Complemental strand, 3208379 - 3207896
Alignment:
| Q |
12 |
atgaagaaggttgatgttaagggaaaaatagttgtgtgtgagcaaggtgggtttgttggaagagtagccaaaggtcaagcagttaaagatgccggtggtg |
111 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3208379 |
atgaagaaggttgatgttaagggaaaaatagttgtgtgtgagcaaggtgggtttgttggaagagtagccaaaggtcaagcagttaaagatgccggtggtg |
3208280 |
T |
|
| Q |
112 |
ctgctatgatacttttgaacagtgaaggtgaagatttcaatccaattgctgatgttcatgttctacctgctgtgcatgtaagttactctgctggtttaaa |
211 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3208279 |
ctgctatgatacttttgaacagtgaaggtgaagatttcaatccaattgctgatgttcatgttctacctgctgtgcatgtaagttactctgctggtttaaa |
3208180 |
T |
|
| Q |
212 |
catccaagattatataaattcaacttccacaccaatggccacaattttattcaaaggaactgtcattggaaatcccaatgcccctcaagttgcttcattt |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3208179 |
catccaagattatataaattcaacttccacaccaatggccacaattttattcaaaggaactgtcattggaaatcccaatgcccctcaagttgcttcattt |
3208080 |
T |
|
| Q |
312 |
tcatcaagaggtccaagcaaagcaagccctggaattctgaaaccagacatacttgggcctggattgaacattcttgcgggatggcctatatcattagaca |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3208079 |
tcatcaagaggtccaagcaaagcaagccctggaattctgaaaccagacatacttgggcctggattgaacattcttgcgggatggcctatatcattagaca |
3207980 |
T |
|
| Q |
412 |
atagtacatcatcgtttaacataatttcaggtacctcaatgtcatgtcctcatcttagtggcattgctgctttgttgaaaaact |
495 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3207979 |
atagtacatcatcgtttaacataatttcaggtacctcaatgtcatgtcctcatcttagtggcattgctgctttgttgaaaaact |
3207896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 16 - 495
Target Start/End: Complemental strand, 3202401 - 3201922
Alignment:
| Q |
16 |
agaaggttgatgttaagggaaaaatagttgtgtgtgagcaaggtgggtttgttggaagagtagccaaaggtcaagcagttaaagatgccggtggtgctgc |
115 |
Q |
| |
|
|||| ||||||||||||||||| |||| ||||||||||||| ||| | |||| ||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3202401 |
agaatgttgatgttaagggaaaggtagtagtgtgtgagcaagatggatcggttgaaagagtagccaaaggtcaagcagttaaagatgctggtggtgctgc |
3202302 |
T |
|
| Q |
116 |
tatgatacttttgaacagtgaaggtgaagatttcaatccaattgctgatgttcatgttctacctgctgtgcatgtaagttactctgctggtttaaacatc |
215 |
Q |
| |
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||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3202301 |
tatgatacttttgaatggtgaagatgaagctttcaatccaattgctgatgttcatgttctacctgctgtgcatgtaagttactctgctggtttatccatc |
3202202 |
T |
|
| Q |
216 |
caagattatataaattcaacttccacaccaatggccacaattttattcaaaggaactgtcattggaaatcccaatgcccctcaagttgcttcattttcat |
315 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||| |
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| T |
3202201 |
aaagattatataaactcaacttcaacaccaatggccacaattttattcaaaggaactgttattggaaatccactttcccctcaagttgcttcattttcat |
3202102 |
T |
|
| Q |
316 |
caagaggtccaagcaaagcaagccctggaattctgaaaccagacatacttgggcctggattgaacattcttgcgggatggcctatatcattagacaatag |
415 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||| || |||||||||||||||||||||||||| |
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| T |
3202101 |
caagaggtccaagcaaaacaagccctggaattctgaaaccagacataattggacctggattgaacattctagcaggatggcctatatcattagacaatag |
3202002 |
T |
|
| Q |
416 |
tacatcatcgtttaacataatttcaggtacctcaatgtcatgtcctcatcttagtggcattgctgctttgttgaaaaact |
495 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
3202001 |
tacatcatcgtttaacataattgcaggtacctcgatgtcttgtcctcatcttagtggcattgctgctttgttgaaaaact |
3201922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 12 - 495
Target Start/End: Complemental strand, 3216318 - 3215832
Alignment:
| Q |
12 |
atgaagaaggttgatgttaagggaaaaatagttgtgtgtgagcaaggtgggtttgttggaagagtagccaaaggtcaagcagttaaagatgccggtggtg |
111 |
Q |
| |
|
|||||||| |||||||||||||||| ||||| |||||||| ||||||| ||||| | || ||| |||| ||||||||||||||| || ||||| |
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| T |
3216318 |
atgaagaacattgatgttaagggaaaggtagttttgtgtgaggaaggtggacttgtttcacaagcagcgaaagctcaagcagttaaagacgctggtggat |
3216219 |
T |
|
| Q |
112 |
ctgctatgatacttttgaacagtgaaggtgaagatttcaatccaattgctgatgttcatgt---tctacctgctgtgcatgtaagttactctgctggttt |
208 |
Q |
| |
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|||| ||||| || |||| ||| || | ||| ||| |||||| | |||||||| | ||||||||||| | ||||||||||||||||||||| |
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| T |
3216218 |
ctgccatgatcctcatgaatagtaaacttcaaggttttgatccaaaatccgatgttcaagacaatctacctgctgcacttgtaagttactctgctggttt |
3216119 |
T |
|
| Q |
209 |
aaacatccaagattatataaattcaacttccacaccaatggccacaattttattcaaaggaactgtcattggaaatcccaatgcccctcaagttgcttca |
308 |
Q |
| |
|
| |||| ||||||||||||| |||||||| |||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||| |||| |
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| T |
3216118 |
atccatcaaagattatataaactcaacttcaacaccaatggccacgattttattcaatggaactgttattggaaatcccaatgcccctcaagtagcttac |
3216019 |
T |
|
| Q |
309 |
ttttcatcaagaggtccaagcaaagcaagccctggaattctgaaaccagacatacttgggcctggattgaacattcttgcgggatggcctatatcattag |
408 |
Q |
| |
|
|||||||||||||| |||| | ||| |||||| ||||||||||||||||||||| |||| |||||| |||||||||| || | ||||| | ||||||| | |
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|
| T |
3216018 |
ttttcatcaagaggaccaaaccaagaaagcccaggaattctgaaaccagacataattggacctggagtgaacattctagcagcatggcatgtatcattgg |
3215919 |
T |
|
| Q |
409 |
acaatagtacatcatcgtttaacataatttcaggtacctcaatgtcatgtcctcatcttagtggcattgctgctttgttgaaaaact |
495 |
Q |
| |
|
|||| | || | || | | ||||| |||||||||||||||||||| ||||| ||||| ||||| ||||||||| |||||||||||| |
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|
| T |
3215918 |
acaacaatataccaccatacaacatcatttcaggtacctcaatgtcttgtccacatctcagtggaattgctgctctgttgaaaaact |
3215832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 300 - 361
Target Start/End: Complemental strand, 3220947 - 3220886
Alignment:
| Q |
300 |
gttgcttcattttcatcaagaggtccaagcaaagcaagccctggaattctgaaaccagacat |
361 |
Q |
| |
|
|||| ||||||||| |||||||| |||||| ||| ||| ||||||||||| ||||||||||| |
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|
| T |
3220947 |
gttgtttcattttcttcaagaggaccaagccaagaaagtcctggaattcttaaaccagacat |
3220886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 361
Target Start/End: Original strand, 3178861 - 3178922
Alignment:
| Q |
300 |
gttgcttcattttcatcaagaggtccaagcaaagcaagccctggaattctgaaaccagacat |
361 |
Q |
| |
|
|||| ||||||||| |||||||| |||||| || ||| ||||||||||| ||||||||||| |
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| T |
3178861 |
gttgtttcattttcttcaagaggaccaagccaacaaagtcctggaattcttaaaccagacat |
3178922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 361
Target Start/End: Complemental strand, 3231180 - 3231119
Alignment:
| Q |
300 |
gttgcttcattttcatcaagaggtccaagcaaagcaagccctggaattctgaaaccagacat |
361 |
Q |
| |
|
|||| ||||||||| |||||||| |||||| ||| ||| || |||||||| ||||||||||| |
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|
| T |
3231180 |
gttgtttcattttcttcaagaggaccaagccaagaaagtccaggaattcttaaaccagacat |
3231119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 361
Target Start/End: Complemental strand, 3239979 - 3239918
Alignment:
| Q |
300 |
gttgcttcattttcatcaagaggtccaagcaaagcaagccctggaattctgaaaccagacat |
361 |
Q |
| |
|
|||| ||||||||| |||||||| |||||| || ||| ||||||||||| ||||||||||| |
|
|
| T |
3239979 |
gttgtttcattttcttcaagaggaccaagccaacaaagtcctggaattcttaaaccagacat |
3239918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 425 - 472
Target Start/End: Complemental strand, 7523919 - 7523872
Alignment:
| Q |
425 |
gtttaacataatttcaggtacctcaatgtcatgtcctcatcttagtgg |
472 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||| ||||||| |
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| T |
7523919 |
gtttaacataatttcaggtacttctatgtcatgtcctcatgttagtgg |
7523872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 429 - 485
Target Start/End: Original strand, 42445967 - 42446023
Alignment:
| Q |
429 |
aacataatttcaggtacctcaatgtcatgtcctcatcttagtggcattgctgctttg |
485 |
Q |
| |
|
||||| || ||||| || ||||||||||| || ||||||||||||||||| |||||| |
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|
| T |
42445967 |
aacattatgtcaggcacatcaatgtcatgcccacatcttagtggcattgcggctttg |
42446023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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