View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10865A_low_71 (Length: 367)
Name: NF10865A_low_71
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865A_low_71 |
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Alignment Details
Target: chr2 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 12974439 - 12974243
Alignment:
| Q |
1 |
ggacatcatgtgcacaatatcttc-gtcaattaaaggtgccatgacatgcatgataatgcaactaatagaaaaaccgataaaaagattaacttgcataaa |
99 |
Q |
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| T |
12974439 |
ggacttcatgtgcacaatatcttccgtcaattaaaggtgccatgacatgcatgataatgcaactaatagaaaaaccgataaaaagattaacttgcataaa |
12974340 |
T |
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| Q |
100 |
aatttgatgaaatgaggatcaatgtaacaacaacnnnnnnntcagaaggatcgatatgattatggttattttaaattctaagtgttattaaagagga |
196 |
Q |
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| T |
12974339 |
aatttgatgaaatgaggatcaatgtaacaacaacaaaaaaatcagaaggatcgatatgattatggttattttaaattctaagtgttattaaagagga |
12974243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 242 - 356
Target Start/End: Complemental strand, 13148247 - 13148141
Alignment:
| Q |
242 |
aatcttgctaaaaaattgatgagccatatgattcttatatctccaagactcttccacacttcaagataggtatattgtttgaccccatttccttgccatt |
341 |
Q |
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| T |
13148247 |
aatcttgctaaaaaattggtgagccacatgattcttatatctccaagacttttccacacttca--------atattgtttgaccccatttccttgccatt |
13148156 |
T |
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| Q |
342 |
tcaatgggcatttat |
356 |
Q |
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| T |
13148155 |
tcaatgggcatttat |
13148141 |
T |
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