View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10865A_low_78 (Length: 361)

Name: NF10865A_low_78
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10865A_low_78
NF10865A_low_78
[»] chr8 (20 HSPs)
chr8 (21-349)||(11876473-11876805)
chr8 (21-349)||(11891480-11891812)
chr8 (42-155)||(11869552-11869668)
chr8 (282-354)||(29038029-29038101)
chr8 (283-354)||(415136-415207)
chr8 (283-354)||(1657867-1657938)
chr8 (283-354)||(14031794-14031865)
chr8 (279-354)||(15920017-15920092)
chr8 (283-354)||(36801834-36801905)
chr8 (283-354)||(37402238-37402309)
chr8 (293-354)||(23995099-23995160)
chr8 (294-349)||(3539270-3539325)
chr8 (294-345)||(22808808-22808859)
chr8 (293-347)||(6235021-6235075)
chr8 (280-354)||(12701471-12701544)
chr8 (308-354)||(29005524-29005570)
chr8 (294-343)||(38747081-38747129)
chr8 (294-354)||(7975965-7976025)
chr8 (280-349)||(32161890-32161961)
chr8 (292-340)||(43922197-43922245)
[»] chr3 (19 HSPs)
chr3 (291-354)||(53056317-53056380)
chr3 (279-338)||(7137470-7137529)
chr3 (280-354)||(37681303-37681377)
chr3 (281-354)||(2699537-2699610)
chr3 (279-344)||(21587029-21587093)
chr3 (283-354)||(3806625-3806696)
chr3 (283-354)||(44177048-44177119)
chr3 (294-349)||(49758127-49758182)
chr3 (280-330)||(9768838-9768888)
chr3 (280-354)||(31293032-31293106)
chr3 (292-354)||(39948854-39948916)
chr3 (293-349)||(13867861-13867917)
chr3 (292-340)||(54767968-54768016)
chr3 (294-341)||(29541804-29541851)
chr3 (303-340)||(7639436-7639473)
chr3 (279-315)||(4857212-4857248)
chr3 (279-315)||(4878947-4878983)
chr3 (292-340)||(5907358-5907406)
chr3 (292-340)||(21092025-21092073)
[»] chr2 (20 HSPs)
chr2 (282-354)||(44959579-44959651)
chr2 (291-356)||(20110952-20111017)
chr2 (294-349)||(1743417-1743472)
chr2 (282-354)||(14690142-14690214)
chr2 (280-346)||(9045255-9045321)
chr2 (280-354)||(21384694-21384768)
chr2 (280-354)||(41207424-41207498)
chr2 (301-349)||(11259333-11259381)
chr2 (280-320)||(45554309-45554349)
chr2 (283-354)||(2383048-2383119)
chr2 (291-349)||(10886515-10886573)
chr2 (280-342)||(20625286-20625348)
chr2 (291-329)||(33615236-33615274)
chr2 (305-354)||(744946-744995)
chr2 (280-349)||(16568218-16568287)
chr2 (301-354)||(23914752-23914805)
chr2 (280-316)||(18470156-18470192)
chr2 (294-354)||(31525227-31525287)
chr2 (294-354)||(37110105-37110165)
chr2 (305-349)||(45624746-45624790)
[»] scaffold1017 (1 HSPs)
scaffold1017 (282-349)||(2087-2154)
[»] chr6 (9 HSPs)
chr6 (292-349)||(2536598-2536655)
chr6 (279-349)||(5493028-5493098)
chr6 (294-354)||(11573637-11573697)
chr6 (281-349)||(15960356-15960424)
chr6 (294-349)||(25342083-25342138)
chr6 (280-347)||(8174621-8174690)
chr6 (317-354)||(11573370-11573407)
chr6 (281-354)||(20469612-20469685)
chr6 (294-354)||(7914616-7914676)
[»] chr1 (23 HSPs)
chr1 (282-354)||(38340063-38340135)
chr1 (279-349)||(26768212-26768282)
chr1 (279-349)||(42986566-42986636)
chr1 (301-354)||(42560995-42561048)
chr1 (291-354)||(4968738-4968801)
chr1 (280-354)||(42561685-42561759)
chr1 (301-354)||(40368045-40368098)
chr1 (281-354)||(43020509-43020581)
chr1 (292-340)||(4242049-4242097)
chr1 (294-354)||(8028719-8028779)
chr1 (292-340)||(8573996-8574044)
chr1 (294-346)||(43603002-43603054)
chr1 (295-354)||(3086123-3086181)
chr1 (293-348)||(3156267-3156322)
chr1 (310-349)||(33578793-33578832)
chr1 (296-354)||(14487120-14487178)
chr1 (291-336)||(16296167-16296212)
chr1 (292-340)||(5812144-5812192)
chr1 (294-346)||(8454457-8454509)
chr1 (291-347)||(33129381-33129436)
chr1 (292-340)||(34969385-34969433)
chr1 (293-349)||(35056239-35056295)
chr1 (292-340)||(46273540-46273588)
[»] scaffold0013 (1 HSPs)
scaffold0013 (291-354)||(96981-97044)
[»] chr4 (17 HSPs)
chr4 (37-111)||(32931063-32931138)
chr4 (280-349)||(38004332-38004402)
chr4 (293-349)||(10981668-10981724)
chr4 (283-354)||(23315864-23315935)
chr4 (307-349)||(28915574-28915616)
chr4 (294-354)||(4815856-4815916)
chr4 (281-349)||(7712908-7712976)
chr4 (292-340)||(32547389-32547437)
chr4 (281-349)||(43097072-43097140)
chr4 (291-330)||(7396784-7396823)
chr4 (295-354)||(12294291-12294350)
chr4 (304-349)||(24670067-24670112)
chr4 (292-340)||(2133519-2133567)
chr4 (301-349)||(7456681-7456729)
chr4 (292-340)||(23431685-23431733)
chr4 (292-340)||(23432210-23432258)
chr4 (322-354)||(48171787-48171819)
[»] chr7 (22 HSPs)
chr7 (280-349)||(19346315-19346384)
chr7 (282-354)||(29357184-29357257)
chr7 (293-349)||(12650708-12650764)
chr7 (283-354)||(5096548-5096619)
chr7 (279-354)||(13640881-13640956)
chr7 (283-354)||(39753628-39753699)
chr7 (279-349)||(13703262-13703332)
chr7 (294-344)||(25089110-25089160)
chr7 (302-354)||(9059349-9059401)
chr7 (279-354)||(3584096-3584171)
chr7 (310-349)||(5318755-5318794)
chr7 (294-349)||(35070984-35071039)
chr7 (294-349)||(35097017-35097072)
chr7 (281-348)||(39617343-39617410)
chr7 (281-354)||(10040857-10040930)
chr7 (296-341)||(20097945-20097990)
chr7 (293-349)||(33429105-33429162)
chr7 (301-349)||(5468058-5468106)
chr7 (292-340)||(25610629-25610677)
chr7 (301-349)||(35791921-35791969)
chr7 (297-349)||(38636382-38636434)
chr7 (292-340)||(45000987-45001035)
[»] chr5 (27 HSPs)
chr5 (280-349)||(9050969-9051038)
chr5 (280-349)||(28479496-28479565)
chr5 (293-349)||(1592071-1592127)
chr5 (279-334)||(1584658-1584713)
chr5 (294-349)||(9666130-9666185)
chr5 (294-349)||(17704276-17704331)
chr5 (279-354)||(27175124-27175199)
chr5 (283-354)||(27263866-27263937)
chr5 (283-354)||(28394694-28394765)
chr5 (283-354)||(31172326-31172397)
chr5 (283-354)||(41879833-41879904)
chr5 (291-348)||(31202001-31202058)
chr5 (301-354)||(38629279-38629332)
chr5 (301-341)||(21344877-21344917)
chr5 (294-341)||(6205869-6205916)
chr5 (295-354)||(11487560-11487618)
chr5 (278-348)||(14930651-14930721)
chr5 (292-341)||(7464142-7464191)
chr5 (301-354)||(38600655-38600708)
chr5 (303-340)||(40493855-40493892)
chr5 (296-340)||(9523869-9523913)
chr5 (294-354)||(26647208-26647268)
chr5 (301-349)||(26917758-26917806)
chr5 (294-354)||(26918792-26918852)
chr5 (292-340)||(39850816-39850864)
chr5 (292-340)||(42027689-42027737)
chr5 (292-340)||(42516171-42516219)
[»] scaffold0035 (1 HSPs)
scaffold0035 (283-354)||(81784-81855)
[»] scaffold0009 (1 HSPs)
scaffold0009 (291-349)||(53667-53725)
[»] scaffold0018 (1 HSPs)
scaffold0018 (279-328)||(36749-36798)


Alignment Details
Target: chr8 (Bit Score: 291; Significance: 1e-163; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 21 - 349
Target Start/End: Complemental strand, 11876805 - 11876473
Alignment:
Q  21 ttaatcattctacatcattaaacaaacctaaagcttcgccaactggagcagaactcaaggagataaatttatggttttggctagaagaaaaacttcatca 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11876805 ttaatcattctacatcattaaacaaacctaaagcttcgccaactggagcagaactcaaggagataaatttatggttttggctagaagaaaaacttcatca 11876706  T
Q  121 tca---gacacacatataccaatgcttataaaattcatagattgtgaaaaggaatcatcaatattgcgcttgaacagttgcagtttatacatgtggcatt 217  Q
    |||   |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11876705 tcatcagacacacatataccaatgcttataaaattcatagattgcgaaaaggaatcatcaatattgcgcttgaacagttgcagtttatacatgtggcatt 11876606  T
Q  218 accaatccaaaatcatataaatta-tattgaggaaataaatattaactactacactaaatctggattttgggcagacttttttgttatttcaattatact 316  Q
    || ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  11876605 actaatccaaaatcatataaattattattgaggaaataaataataactactacactaaatctggattttgggcaaacttttttgttatttcaattatact 11876506  T
Q  317 cttacacaaatttttctataataatgttatatt 349  Q
    |||||| ||||||||||||||||||||||||||    
T  11876505 cttacataaatttttctataataatgttatatt 11876473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 21 - 349
Target Start/End: Complemental strand, 11891812 - 11891480
Alignment:
Q  21 ttaatcattctacatcattaaacaaacctaaagcttcgccaactggagcagaactcaaggagataaatttatggttttggctagaagaaaaacttcatca 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11891812 ttaatcattctacatcattaaacaaacctaaagcttcgccaactggagcagaactcaaggagataaatttatggttttggctagaagaaaaacttcatca 11891713  T
Q  121 tca---gacacacatataccaatgcttataaaattcatagattgtgaaaaggaatcatcaatattgcgcttgaacagttgcagtttatacatgtggcatt 217  Q
    |||   |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11891712 tcatcagacacacatataccaatgcttataaaattcatagattgcgaaaaggaatcatcaatattgcgcttgaacagttgcagtttatacatgtggcatt 11891613  T
Q  218 accaatccaaaatcatataaatta-tattgaggaaataaatattaactactacactaaatctggattttgggcagacttttttgttatttcaattatact 316  Q
    || ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  11891612 actaatccaaaatcatataaattattattgaggaaataaataataactactacactaaatctggattttgggcaaacttttttgttatttcaattatact 11891513  T
Q  317 cttacacaaatttttctataataatgttatatt 349  Q
    |||||| ||||||||||||||||||||||||||    
T  11891512 cttacataaatttttctataataatgttatatt 11891480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 42 - 155
Target Start/End: Complemental strand, 11869668 - 11869552
Alignment:
Q  42 acaaacctaaagcttcgccaactggagcagaactcaaggagataaatttatggttttggctagaagaaaaacttcatcatca---gacacacatatacca 138  Q
    |||||||||||||||| ||||| ||| || ||| ||| |||| ||||| |||||||||| ||||| ||||||| ||||||||   | |||||||||||||    
T  11869668 acaaacctaaagcttctccaacaggaacataacccaaagagagaaattcatggttttggatagaacaaaaactccatcatcattgggcacacatatacca 11869569  T
Q  139 atgcttataaaattcat 155  Q
    ||||||||| |||||||    
T  11869568 atgcttatataattcat 11869552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 282 - 354
Target Start/End: Complemental strand, 29038101 - 29038029
Alignment:
Q  282 ttttgggcagacttttttgttatttcaattatactcttacacaaatttttctataataatgttatattcttgg 354  Q
    |||||||  ||||||||||||||| |||||||||  ||| ||| ||||| |||||||||||||||||| ||||    
T  29038101 ttttgggatgacttttttgttattccaattatacggttaaacatattttcctataataatgttatattgttgg 29038029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 283 - 354
Target Start/End: Original strand, 415136 - 415207
Alignment:
Q  283 tttgggcagacttttttgttatttcaattatactcttacacaaatttttctataataatgttatattcttgg 354  Q
    ||||||| || |||||| | ||||||||||||| |||| ||||||||| ||||| |||||||| ||||||||    
T  415136 tttgggctgaattttttataatttcaattatacccttaaacaaattttcctatattaatgttacattcttgg 415207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 283 - 354
Target Start/End: Original strand, 1657867 - 1657938
Alignment:
Q  283 tttgggcagacttttttgttatttcaattatactcttacacaaatttttctataataatgttatattcttgg 354  Q
    ||||||| || |||||| | ||||||||||||| |||| ||||||||| ||||| |||||||| ||||||||    
T  1657867 tttgggctgaattttttataatttcaattatacccttaaacaaattttcctatattaatgttacattcttgg 1657938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 283 - 354
Target Start/End: Complemental strand, 14031865 - 14031794
Alignment:
Q  283 tttgggcagacttttttgttatttcaattatactcttacacaaatttttctataataatgttatattcttgg 354  Q
    ||||||| || |||||| | ||||||||||||| |||| ||||||||| ||||| |||||||| ||||||||    
T  14031865 tttgggctgaattttttataatttcaattatacccttaaacaaattttcctatattaatgttacattcttgg 14031794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 279 - 354
Target Start/End: Original strand, 15920017 - 15920092
Alignment:
Q  279 ggattttgggcagacttttttgttatttcaattatactcttacacaaatttttctataataatgttatattcttgg 354  Q
    |||| |||||| || ||||||||||||  |||||||| |||| |||||||||  ||||||||||||||||| ||||    
T  15920017 ggatcttgggctgaattttttgttattctaattatacccttaaacaaattttcttataataatgttatattgttgg 15920092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 283 - 354
Target Start/End: Original strand, 36801834 - 36801905
Alignment:
Q  283 tttgggcagacttttttgttatttcaattatactcttacacaaatttttctataataatgttatattcttgg 354  Q
    ||||||| || |||||| | ||||||||||||| |||| ||||||||| ||||| |||||||| ||||||||    
T  36801834 tttgggctgaattttttataatttcaattatacccttaaacaaattttcctatattaatgttacattcttgg 36801905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 283 - 354
Target Start/End: Complemental strand, 37402309 - 37402238
Alignment:
Q  283 tttgggcagacttttttgttatttcaattatactcttacacaaatttttctataataatgttatattcttgg 354  Q
    ||||||| || |||||| | ||||||||||||| |||| ||||||||| ||||| |||||||| ||||||||    
T  37402309 tttgggctgaattttttataatttcaattatacccttaaacaaattttcctatattaatgttacattcttgg 37402238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 293 - 354
Target Start/End: Complemental strand, 23995160 - 23995099
Alignment:
Q  293 cttttttgttatttcaattatactcttacacaaatttttctataataatgttatattcttgg 354  Q
    |||||||||||||||||||||||| ||| |    ||||||||||||||||||||||| ||||    
T  23995160 cttttttgttatttcaattatacttttaaatggttttttctataataatgttatattgttgg 23995099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 294 - 349
Target Start/End: Original strand, 3539270 - 3539325
Alignment:
Q  294 ttttttgttatttcaattatactcttacacaaatttttctataataatgttatatt 349  Q
    |||||| ||||||||||||||| |||| |||||||||  |||||||| ||||||||    
T  3539270 tttttttttatttcaattatacccttaaacaaattttcatataataacgttatatt 3539325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 294 - 345
Target Start/End: Complemental strand, 22808859 - 22808808
Alignment:
Q  294 ttttttgttatttcaattatactcttacacaaatttttctataataatgtta 345  Q
    |||||| | ||||||||||||| |||| ||||||||||||||| ||||||||    
T  22808859 ttttttataatttcaattatacccttaaacaaatttttctatattaatgtta 22808808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 347
Target Start/End: Original strand, 6235021 - 6235075
Alignment:
Q  293 cttttttgttatttcaattatactcttacacaaatttttctataataatgttata 347  Q
    ||||||||||||||||| ||||| |||| |||||||||  ||||||||| |||||    
T  6235021 cttttttgttatttcaaatatacccttaaacaaattttcatataataatattata 6235075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 354
Target Start/End: Original strand, 12701471 - 12701544
Alignment:
Q  280 gattttgggcagacttttttgttatttcaattatactcttacacaaatttttctataataatgttatattcttgg 354  Q
    ||||||| || ||||||||||||||||||||||||| | || | || ||||| ||| ||||||||||||| ||||    
T  12701471 gattttgtgctgacttttttgttatttcaattatac-cctaaataattttttttatgataatgttatatttttgg 12701544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 308 - 354
Target Start/End: Original strand, 29005524 - 29005570
Alignment:
Q  308 aattatactcttacacaaatttttctataataatgttatattcttgg 354  Q
    ||||||||| ||| |||||||||||||||||| ||||||||| ||||    
T  29005524 aattatactgttaaacaaatttttctataatattgttatattgttgg 29005570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 343
Target Start/End: Complemental strand, 38747129 - 38747081
Alignment:
Q  294 ttttttgttatttcaattatactcttacacaaatttttctataataatgt 343  Q
    |||||||||||||||||||||| |||| || ||||||| |||||||||||    
T  38747129 ttttttgttatttcaattatacacttaaac-aatttttatataataatgt 38747081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 354
Target Start/End: Complemental strand, 7976025 - 7975965
Alignment:
Q  294 ttttttgttatttcaattatactcttacacaaatttttctataataatgttatattcttgg 354  Q
    ||||||| ||||||||||||||  ||| |||||||||  ||||||||||| ||||| ||||    
T  7976025 ttttttgctatttcaattatacctttaaacaaattttcttataataatgtcatattgttgg 7975965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 349
Target Start/End: Original strand, 32161890 - 32161961
Alignment:
Q  280 gattttgggcagacttttttgttatttcaattatactcttacacaa--atttttctataataatgttatatt 349  Q
    |||||||||  |||||||||||||||  |||||||| |||| ||||   ||||||| |||||||||||||||    
T  32161890 gattttgggttgacttttttgttattctaattatacccttaaacaattttttttctgtaataatgttatatt 32161961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 340
Target Start/End: Original strand, 43922197 - 43922245
Alignment:
Q  292 acttttttgttatttcaattatactcttacacaaatttttctataataa 340  Q
    |||||||  |||| ||||||||||||||| |||| ||||||||||||||    
T  43922197 actttttcattatctcaattatactcttaaacaactttttctataataa 43922245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 291 - 354
Target Start/End: Original strand, 53056317 - 53056380
Alignment:
Q  291 gacttttttgttatttcaattatactcttacacaaatttttctataataatgttatattcttgg 354  Q
    ||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||| ||||    
T  53056317 gacttttttgttatttcaattatacccttaaacatatttttctataataatgttatattgttgg 53056380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 279 - 338
Target Start/End: Complemental strand, 7137529 - 7137470
Alignment:
Q  279 ggattttgggcagacttttttgttatttcaattatactcttacacaaatttttctataat 338  Q
    ||||||||||| ||||||||||||||| ||||||||  |||| |||||||||||||||||    
T  7137529 ggattttgggctgacttttttgttattccaattatatccttaaacaaatttttctataat 7137470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 280 - 354
Target Start/End: Original strand, 37681303 - 37681377
Alignment:
Q  280 gattttgggcagacttttttgttatttcaattatactcttacacaaatttttctataataatgttatattcttgg 354  Q
    |||||||||| || |||||| | ||||||||||||| |||| ||||||||| ||||| |||||||||||| ||||    
T  37681303 gattttgggctgaattttttataatttcaattatacccttaaacaaattttcctatattaatgttatattgttgg 37681377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 281 - 354
Target Start/End: Complemental strand, 2699610 - 2699537
Alignment:
Q  281 attttgggcagacttttttgttatttcaattatactcttacacaaatttttctataataatgttatattcttgg 354  Q
    ||||| ||| ||||||||  ||||||||||||||| |||| | |||||||| ||||||||||||||||| ||||    
T  2699610 atttttggctgactttttcattatttcaattatacccttatataaatttttatataataatgttatattgttgg 2699537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 279 - 344
Target Start/End: Complemental strand, 21587093 - 21587029
Alignment:
Q  279 ggattttgggcagacttttttgttatttcaattatactcttacacaaatttttctataataatgtt 344  Q
    ||||||||||| ||||||||||||||| |||||||| ||||| ||||| |||| ||||||||||||    
T  21587093 ggattttgggctgacttttttgttattccaattata-tcttaaacaaacttttttataataatgtt 21587029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 283 - 354
Target Start/End: Original strand, 3806625 - 3806696
Alignment:
Q  283 tttgggcagacttttttgttatttcaattatactcttacacaaatttttctataataatgttatattcttgg 354  Q
    ||||||| || |||||| | ||||||||||||| |||| ||||||||| ||||| |||||||| ||||||||    
T  3806625 tttgggctgaattttttataatttcaattatacccttaaacaaattttcctatattaatgttacattcttgg 3806696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 283 - 354
Target Start/End: Complemental strand, 44177119 - 44177048
Alignment:
Q  283 tttgggcagacttttttgttatttcaattatactcttacacaaatttttctataataatgttatattcttgg 354  Q
    ||||||| || |||||| | ||||||||||||| |||| ||||||||| ||||| |||||||| ||||||||    
T  44177119 tttgggctgaattttttataatttcaattatacccttaaacaaattttcctatattaatgttacattcttgg 44177048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 294 - 349
Target Start/End: Complemental strand, 49758182 - 49758127
Alignment:
Q  294 ttttttgttatttcaattatactcttacacaaatttttctataataatgttatatt 349  Q
    |||||| ||||||||||||||| |||| |||| ||||||||||||||| |||||||    
T  49758182 ttttttattatttcaattatacccttaaacaattttttctataataatattatatt 49758127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 330
Target Start/End: Original strand, 9768838 - 9768888
Alignment:
Q  280 gattttgggcagacttttttgttatttcaattatactcttacacaaatttt 330  Q
    |||||||| |||| ||||| |||||||||||||||| ||||||||||||||    
T  9768838 gattttggccagattttttagttatttcaattatacacttacacaaatttt 9768888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 354
Target Start/End: Original strand, 31293032 - 31293106
Alignment:
Q  280 gattttgggcagacttttttgttatttcaattatactcttacacaaatttttctataataatgttatattcttgg 354  Q
    |||||||| | || |||||| |||||| ||||||||| |||  ||||||||||||||||||| ||||||| ||||    
T  31293032 gattttggactgatttttttattattttaattatacttttaagcaaatttttctataataatattatattgttgg 31293106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 292 - 354
Target Start/End: Original strand, 39948854 - 39948916
Alignment:
Q  292 acttttttgttatttcaattatactcttacacaaatttttctataataatgttatattcttgg 354  Q
    ||||||||| ||||  |||||||| |||| ||| |||||||||||||||||||||||| ||||    
T  39948854 acttttttgatattctaattatacacttaaacatatttttctataataatgttatattgttgg 39948916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 349
Target Start/End: Complemental strand, 13867917 - 13867861
Alignment:
Q  293 cttttttgttatttcaattatactcttacacaaatttttctataataatgttatatt 349  Q
    |||||||||||||||| ||||| ||||| |||||||||  ||||||||| |||||||    
T  13867917 cttttttgttatttcagttatattcttaaacaaattttcatataataatcttatatt 13867861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 340
Target Start/End: Original strand, 54767968 - 54768016
Alignment:
Q  292 acttttttgttatttcaattatactcttacacaaatttttctataataa 340  Q
    ||||||| ||||||||||||||||||||| |||| |||||| |||||||    
T  54767968 actttttcgttatttcaattatactcttaaacaactttttcaataataa 54768016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 294 - 341
Target Start/End: Complemental strand, 29541851 - 29541804
Alignment:
Q  294 ttttttgttatttcaattatactcttacacaaatttttctataataat 341  Q
    |||||||||||||||||||||| |||| ||||||||| | ||||||||    
T  29541851 ttttttgttatttcaattatacccttaaacaaattttccaataataat 29541804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 340
Target Start/End: Original strand, 7639436 - 7639473
Alignment:
Q  303 atttcaattatactcttacacaaatttttctataataa 340  Q
    |||||||||||||||||| |||| ||||||||||||||    
T  7639436 atttcaattatactcttaaacaactttttctataataa 7639473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 315
Target Start/End: Original strand, 4857212 - 4857248
Alignment:
Q  279 ggattttgggcagacttttttgttatttcaattatac 315  Q
    ||||||||||| ||||||||||||||| |||||||||    
T  4857212 ggattttgggctgacttttttgttattccaattatac 4857248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 315
Target Start/End: Original strand, 4878947 - 4878983
Alignment:
Q  279 ggattttgggcagacttttttgttatttcaattatac 315  Q
    ||||||||||| ||||||||||||||| |||||||||    
T  4878947 ggattttgggctgacttttttgttattccaattatac 4878983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 340
Target Start/End: Complemental strand, 5907406 - 5907358
Alignment:
Q  292 acttttttgttatttcaattatactcttacacaaatttttctataataa 340  Q
    |||||||| ||||||||||||||| |||| |||| ||||| ||||||||    
T  5907406 acttttttattatttcaattatacccttaaacaactttttatataataa 5907358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 340
Target Start/End: Complemental strand, 21092073 - 21092025
Alignment:
Q  292 acttttttgttatttcaattatactcttacacaaatttttctataataa 340  Q
    |||||||| ||||  |||||||||||||| |||| ||||||||||||||    
T  21092073 acttttttattatcccaattatactcttaaacaagtttttctataataa 21092025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 282 - 354
Target Start/End: Original strand, 44959579 - 44959651
Alignment:
Q  282 ttttgggcagacttttttgttatttcaattatactcttacacaaatttttctataataatgttatattcttgg 354  Q
    |||||||| ||||||||||||||||||||||||| |||| ||| ||||| |||||||||||||| ||| ||||    
T  44959579 ttttgggctgacttttttgttatttcaattatacccttaaacatattttactataataatgttacattgttgg 44959651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 291 - 356
Target Start/End: Original strand, 20110952 - 20111017
Alignment:
Q  291 gacttttttgttatttcaattatactcttacacaaatttttctataataatgttatattcttggag 356  Q
    ||||||||||||||||||||||||| |||| | |||||||| ||||||||| ||||||| ||||||    
T  20110952 gacttttttgttatttcaattatacccttaaataaatttttatataataatattatattgttggag 20111017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 294 - 349
Target Start/End: Original strand, 1743417 - 1743472
Alignment:
Q  294 ttttttgttatttcaattatactcttacacaaatttttctataataatgttatatt 349  Q
    |||||| |||||||||||||| ||||| |||||||||||||||||||| |||||||    
T  1743417 tttttttttatttcaattatagtcttaaacaaatttttctataataattttatatt 1743472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 282 - 354
Target Start/End: Complemental strand, 14690214 - 14690142
Alignment:
Q  282 ttttgggcagacttttttgttatttcaattatactcttacacaaatttttctataataatgttatattcttgg 354  Q
    |||| ||| ||||||| ||||||| ||||||||| |||| ||| ||||| |||||||||||||||||| ||||    
T  14690214 ttttaggctgacttttctgttattccaattatacccttaaacatattttcctataataatgttatattgttgg 14690142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 346
Target Start/End: Complemental strand, 9045321 - 9045255
Alignment:
Q  280 gattttgggcagacttttttgttatttcaattatactcttacacaaatttttctataataatgttat 346  Q
    |||||||||| ||||||||||||||| || || | |||||| |||||||||| ||||||||| ||||    
T  9045321 gattttgggctgacttttttgttattccattttttctcttaaacaaatttttatataataatattat 9045255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 354
Target Start/End: Complemental strand, 21384768 - 21384694
Alignment:
Q  280 gattttgggcagacttttttgttatttcaattatactcttacacaaatttttctataataatgttatattcttgg 354  Q
    |||||||||  | ||||||||||||||||||||||| |||| |||| ||||  |||||||||| |||||| ||||    
T  21384768 gattttgggttggcttttttgttatttcaattatacccttaaacaatttttcatataataatgctatattgttgg 21384694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 354
Target Start/End: Original strand, 41207424 - 41207498
Alignment:
Q  280 gattttgggcagacttttttgttatttcaattatactcttacacaaatttttctataataatgttatattcttgg 354  Q
    |||||||||  |||||||||||||||||||||| |   ||| ||||||||| | |||||||||||||||| ||||    
T  41207424 gattttgggatgacttttttgttatttcaattaaatctttaaacaaattttccaataataatgttatattattgg 41207498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 349
Target Start/End: Original strand, 11259333 - 11259381
Alignment:
Q  301 ttatttcaattatactcttacacaaatttttctataataatgttatatt 349  Q
    ||||| ||||||||||| || |||||||||||||||||||||| |||||    
T  11259333 ttattccaattatactcataaacaaatttttctataataatgtaatatt 11259381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 280 - 320
Target Start/End: Complemental strand, 45554349 - 45554309
Alignment:
Q  280 gattttgggcagacttttttgttatttcaattatactctta 320  Q
    |||||||||| ||||||||||||||||||||||||| ||||    
T  45554349 gattttgggctgacttttttgttatttcaattataccctta 45554309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 283 - 354
Target Start/End: Original strand, 2383048 - 2383119
Alignment:
Q  283 tttgggcagacttttttgttatttcaattatactcttacacaaatttttctataataatgttatattcttgg 354  Q
    ||||||| || |||||| | ||||||||||||| |||| | ||||||| ||||| |||||||| ||||||||    
T  2383048 tttgggctgaattttttataatttcaattatacccttaaataaattttcctatattaatgttacattcttgg 2383119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 349
Target Start/End: Original strand, 10886515 - 10886573
Alignment:
Q  291 gacttttttgttatttcaattatactcttacacaaatttttctataataatgttatatt 349  Q
    |||||||||||||||  |||||| |||||| |||| ||||  |||||||||||||||||    
T  10886515 gacttttttgttattctaattattctcttaaacaatttttattataataatgttatatt 10886573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 342
Target Start/End: Original strand, 20625286 - 20625348
Alignment:
Q  280 gattttgggcagacttttttgttatttcaattatactcttacacaaatttttctataataatg 342  Q
    |||||||| | ||||||||  |||| ||||||||||||| | |||| ||||||||||||||||    
T  20625286 gattttggactgactttttcattatctcaattatactctaaaacaattttttctataataatg 20625348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 329
Target Start/End: Original strand, 33615236 - 33615274
Alignment:
Q  291 gacttttttgttatttcaattatactcttacacaaattt 329  Q
    ||||||||||||||| |||||||||||||| ||||||||    
T  33615236 gacttttttgttattccaattatactcttaaacaaattt 33615274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 354
Target Start/End: Complemental strand, 744995 - 744946
Alignment:
Q  305 ttcaattatactcttacacaaatttttctataataatgttatattcttgg 354  Q
    |||||||||||||||| | |||||| ||||||| ||||||||||| ||||    
T  744995 ttcaattatactcttaaataaatttgtctataagaatgttatattgttgg 744946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 349
Target Start/End: Original strand, 16568218 - 16568287
Alignment:
Q  280 gattttgggcagacttttttgttatttcaattatactcttacacaaatttttctataataatgttatatt 349  Q
    |||||| || ||| |||||| |||||| ||||||||  ||| | ||||||||||||| ||||||||||||    
T  16568218 gattttagggagatttttttattattttaattatacctttaaataaatttttctatactaatgttatatt 16568287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 354
Target Start/End: Original strand, 23914752 - 23914805
Alignment:
Q  301 ttatttcaattatactcttacacaaatttttctataataatgttatattcttgg 354  Q
    ||||| |||||||||||||| ||||||||  |||||| ||||||||||| ||||    
T  23914752 ttattccaattatactcttaaacaaatttgcctataagaatgttatattgttgg 23914805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Original strand, 18470156 - 18470192
Alignment:
Q  280 gattttgggcagacttttttgttatttcaattatact 316  Q
    |||||||||  ||||||||||||||||||||||||||    
T  18470156 gattttgggttgacttttttgttatttcaattatact 18470192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 354
Target Start/End: Original strand, 31525227 - 31525287
Alignment:
Q  294 ttttttgttatttcaattatactcttacacaaatttttctataataatgttatattcttgg 354  Q
    |||||| | ||| ||||||||| |||| | ||||||||||||| |||||||||||| ||||    
T  31525227 ttttttataattccaattatacccttaaataaatttttctatattaatgttatattattgg 31525287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 354
Target Start/End: Original strand, 37110105 - 37110165
Alignment:
Q  294 ttttttgttatttcaattatactcttacacaaatttttctataataatgttatattcttgg 354  Q
    ||||||||||||| |||| ||| |||| |||||||||| |||||||||  |||||| ||||    
T  37110105 ttttttgttattttaattttacccttaaacaaatttttatataataatactatattattgg 37110165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 349
Target Start/End: Original strand, 45624746 - 45624790
Alignment:
Q  305 ttcaattatactcttacacaaatttttctataataatgttatatt 349  Q
    ||||||||||  |||| |||||||| |||||||||||||||||||    
T  45624746 ttcaattatatccttaaacaaatttgtctataataatgttatatt 45624790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1017 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold1017
Description:

Target: scaffold1017; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 282 - 349
Target Start/End: Complemental strand, 2154 - 2087
Alignment:
Q  282 ttttgggcagacttttttgttatttcaattatactcttacacaaatttttctataataatgttatatt 349  Q
    |||||| || |||||||||||||| ||||||||| |||| ||| ||||||||||||||||||||||||    
T  2154 ttttggccatacttttttgttattccaattatacccttaaacatatttttctataataatgttatatt 2087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 292 - 349
Target Start/End: Complemental strand, 2536655 - 2536598
Alignment:
Q  292 acttttttgttatttcaattatactcttacacaaatttttctataataatgttatatt 349  Q
    ||||||||||||||||||||||| | ||| |||||||||||||||||||| |||||||    
T  2536655 acttttttgttatttcaattatatttttaaacaaatttttctataataatattatatt 2536598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 279 - 349
Target Start/End: Complemental strand, 5493098 - 5493028
Alignment:
Q  279 ggattttgggcagacttttttgttatttcaattatactcttacacaaatttttctataataatgttatatt 349  Q
    ||||||||||| || |||||| | |||  |||||||| |||| ||||||||||||||||||||||||||||    
T  5493098 ggattttgggctgaattttttataattataattatacccttaaacaaatttttctataataatgttatatt 5493028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 294 - 354
Target Start/End: Original strand, 11573637 - 11573697
Alignment:
Q  294 ttttttgttatttcaattatactcttacacaaatttttctataataatgttatattcttgg 354  Q
    |||||||||||||||||||||| |||| |   |||||||||||||||||||||||| ||||    
T  11573637 ttttttgttatttcaattatacccttaaatttatttttctataataatgttatattgttgg 11573697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 281 - 349
Target Start/End: Complemental strand, 15960424 - 15960356
Alignment:
Q  281 attttgggcagacttttttgttatttcaattatactcttacacaaatttttctataataatgttatatt 349  Q
    ||||||||| || |||||| | ||||||||||||| |||| ||||||||||||||| |||| |||||||    
T  15960424 attttgggctgaattttttataatttcaattatacccttaaacaaatttttctatattaattttatatt 15960356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 294 - 349
Target Start/End: Original strand, 25342083 - 25342138
Alignment:
Q  294 ttttttgttatttcaattatactcttacacaaatttttctataataatgttatatt 349  Q
    |||||| | ||||||||||||| |||| ||||||||||||||| ||||||||||||    
T  25342083 ttttttataatttcaattatacccttaaacaaatttttctatattaatgttatatt 25342138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 347
Target Start/End: Complemental strand, 8174690 - 8174621
Alignment:
Q  280 gattttgggcagacttttttgttatttcaattatactcttacacaa--atttttctataataatgttata 347  Q
    |||||||||| |||||||||||||||||| ||||| | ||| ||||   ||||| |||||||||||||||    
T  8174690 gattttgggctgacttttttgttatttcatttatatttttaaacaattttttttttataataatgttata 8174621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 354
Target Start/End: Original strand, 11573370 - 11573407
Alignment:
Q  317 cttacacaaatttttctataataatgttatattcttgg 354  Q
    |||| |||||||||||||||| ||||||||||||||||    
T  11573370 cttaaacaaatttttctataaaaatgttatattcttgg 11573407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 354
Target Start/End: Complemental strand, 20469685 - 20469612
Alignment:
Q  281 attttgggcagacttttttgttatttcaattatactcttacacaaatttttctataataatgttatattcttgg 354  Q
    ||||| ||| || |||||| | ||| ||||||||| |||| ||||||||| ||||| |||||||||||| ||||    
T  20469685 attttaggctgaattttttataattccaattatacccttaaacaaattttcctatattaatgttatattgttgg 20469612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 354
Target Start/End: Complemental strand, 7914676 - 7914616
Alignment:
Q  294 ttttttgttatttcaattatactcttacacaaatttttctataataatgttatattcttgg 354  Q
    |||||| ||||||||||||||| |||| |||  ||||  ||||||||||||||||| ||||    
T  7914676 tttttttttatttcaattatacccttaaacatgttttcatataataatgttatattgttgg 7914616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 282 - 354
Target Start/End: Original strand, 38340063 - 38340135
Alignment:
Q  282 ttttgggcagacttttttgttatttcaattatactcttacacaaatttttctataataatgttatattcttgg 354  Q
    |||||||| ||||||||||||||||||||||||| |||  ||| ||||| ||||||||| |||||||| ||||    
T  38340063 ttttgggctgacttttttgttatttcaattatacccttcaacatattttcctataataaagttatattattgg 38340135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 279 - 349
Target Start/End: Complemental strand, 26768282 - 26768212
Alignment:
Q  279 ggattttgggcagacttttttgttatttcaattatactcttacacaaatttttctataataatgttatatt 349  Q
    ||||||||||| || ||||||||||||||| ||||||  ||| ||||||||| |||||| |||||||||||    
T  26768282 ggattttgggctgatttttttgttatttcagttatacctttaaacaaattttcctataacaatgttatatt 26768212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 279 - 349
Target Start/End: Original strand, 42986566 - 42986636
Alignment:
Q  279 ggattttgggcagacttttttgttatttcaattatactcttacacaaatttttctataataatgttatatt 349  Q
    ||||||||| | ||||||||||||||||||||||||| |||| |||||| ||  ||||||||| |||||||    
T  42986566 ggattttggactgacttttttgttatttcaattatacccttaaacaaatgttcttataataattttatatt 42986636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 301 - 354
Target Start/End: Complemental strand, 42561048 - 42560995
Alignment:
Q  301 ttatttcaattatactcttacacaaatttttctataataatgttatattcttgg 354  Q
    ||||| ||||||||| |||| |||||||||||||||||||||||||||| ||||    
T  42561048 ttattccaattatacccttaaacaaatttttctataataatgttatattgttgg 42560995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 291 - 354
Target Start/End: Complemental strand, 4968801 - 4968738
Alignment:
Q  291 gacttttttgttatttcaattatactcttacacaaatttttctataataatgttatattcttgg 354  Q
    |||||||||||||||  ||||||||| ||| |||||||||  ||||||||||||||||| ||||    
T  4968801 gacttttttgttattctaattatacttttaaacaaattttcttataataatgttatattgttgg 4968738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 354
Target Start/End: Complemental strand, 42561759 - 42561685
Alignment:
Q  280 gattttgggcagacttttttgttatttcaattatactcttacacaaatttttctataataatgttatattcttgg 354  Q
    |||||||||| ||||||||  ||||| ||||||| | |||  |||||||||||||||| ||||||||||| ||||    
T  42561759 gattttgggctgactttttcattattccaattattcccttcaacaaatttttctataacaatgttatattgttgg 42561685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 301 - 354
Target Start/End: Original strand, 40368045 - 40368098
Alignment:
Q  301 ttatttcaattatactcttacacaaatttttctataataatgttatattcttgg 354  Q
    ||||| ||||||||| |||| ||||||||||||||| |||||||||||| ||||    
T  40368045 ttattccaattatacccttaaacaaatttttctatattaatgttatattgttgg 40368098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 281 - 354
Target Start/End: Original strand, 43020509 - 43020581
Alignment:
Q  281 attttgggcagacttttttgttatttcaattatactcttacacaaatttttctataataatgttatattcttgg 354  Q
    ||||||||  |||||||||||||||| ||||||| ||||| |||||| |||||||||  |||||||||| ||||    
T  43020509 attttgggttgacttttttgttatttaaattata-tcttaaacaaatctttctataaatatgttatattgttgg 43020581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 340
Target Start/End: Original strand, 4242049 - 4242097
Alignment:
Q  292 acttttttgttatttcaattatactcttacacaaatttttctataataa 340  Q
    |||||||  ||||| ||||||||| ||||||||||||||||||||||||    
T  4242049 actttttctttattccaattatacccttacacaaatttttctataataa 4242097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 354
Target Start/End: Complemental strand, 8028779 - 8028719
Alignment:
Q  294 ttttttgttatttcaattatactcttacacaaatttttctataataatgttatattcttgg 354  Q
    |||||| | ||||||||||||| |||| ||||||||| ||||| |||||||| ||||||||    
T  8028779 ttttttataatttcaattatacccttaaacaaattttcctatattaatgttacattcttgg 8028719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 340
Target Start/End: Original strand, 8573996 - 8574044
Alignment:
Q  292 acttttttgttatttcaattatactcttacacaaatttttctataataa 340  Q
    |||||||| |||| ||||||||||||||| |||| ||||||||||||||    
T  8573996 acttttttattatctcaattatactcttaaacaactttttctataataa 8574044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 346
Target Start/End: Original strand, 43603002 - 43603054
Alignment:
Q  294 ttttttgttatttcaattatactcttacacaaatttttctataataatgttat 346  Q
    |||||| ||||||||||||||| |||| |||||||| ||||||||||| ||||    
T  43603002 ttttttattatttcaattatacccttaaacaaatttgtctataataattttat 43603054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 295 - 354
Target Start/End: Complemental strand, 3086181 - 3086123
Alignment:
Q  295 tttttgttatttcaattatactcttacacaaatttttctataataatgttatattcttgg 354  Q
    |||||||||||||||||||||| ||| ||||| |||||||||| || |||||||| ||||    
T  3086181 tttttgttatttcaattatacttttaaacaaa-ttttctataacaacgttatattgttgg 3086123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 293 - 348
Target Start/End: Complemental strand, 3156322 - 3156267
Alignment:
Q  293 cttttttgttatttcaattatactcttacacaaatttttctataataatgttatat 348  Q
    |||||||||||||||||||||| ||||| |||||||||  || ||| |||||||||    
T  3156322 cttttttgttatttcaattatattcttaaacaaattttcatacaatgatgttatat 3156267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 310 - 349
Target Start/End: Complemental strand, 33578832 - 33578793
Alignment:
Q  310 ttatactcttacacaaatttttctataataatgttatatt 349  Q
    |||||| |||| ||||||||||||||||||||||||||||    
T  33578832 ttatacccttaaacaaatttttctataataatgttatatt 33578793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 296 - 354
Target Start/End: Complemental strand, 14487178 - 14487120
Alignment:
Q  296 ttttgttatttcaattatactcttacacaaatttttctataataatgttatattcttgg 354  Q
    |||| ||||| ||||||||||  || |||||||||| ||||||||||||||||| ||||    
T  14487178 ttttattattccaattatactaataaacaaatttttatataataatgttatattgttgg 14487120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 336
Target Start/End: Complemental strand, 16296212 - 16296167
Alignment:
Q  291 gacttttttgttatttcaattatactcttacacaaatttttctata 336  Q
    |||||||||||||||||||||||||  ||| ||||| |||||||||    
T  16296212 gacttttttgttatttcaattatacctttaaacaaaattttctata 16296167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 340
Target Start/End: Complemental strand, 5812192 - 5812144
Alignment:
Q  292 acttttttgttatttcaattatactcttacacaaatttttctataataa 340  Q
    ||||||||||||||| || |||||||||| | || ||||||||||||||    
T  5812192 acttttttgttattttaaatatactcttaaataattttttctataataa 5812144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 346
Target Start/End: Complemental strand, 8454509 - 8454457
Alignment:
Q  294 ttttttgttatttcaattatactcttacacaaatttttctataataatgttat 346  Q
    |||||| ||||| ||||||||| |||| |||||||||  ||||||||||||||    
T  8454509 tttttttttattccaattatacccttaaacaaattttcttataataatgttat 8454457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 347
Target Start/End: Original strand, 33129381 - 33129436
Alignment:
Q  291 gacttttttgttatttcaattatactcttacacaaatttttctataataatgttata 347  Q
    |||||||||||||||||||| ||||||||| || ||||||  |||| ||||||||||    
T  33129381 gacttttttgttatttcaatgatactcttaaac-aattttcttatattaatgttata 33129436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 340
Target Start/End: Complemental strand, 34969433 - 34969385
Alignment:
Q  292 acttttttgttatttcaattatactcttacacaaatttttctataataa 340  Q
    |||||||  ||||| |||||||||||||| |||| ||||||||||||||    
T  34969433 actttttcattattccaattatactcttaaacaattttttctataataa 34969385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 349
Target Start/End: Complemental strand, 35056295 - 35056239
Alignment:
Q  293 cttttttgttatttcaattatactcttacacaaatttttctataataatgttatatt 349  Q
    |||||||||||||||| ||| ||  ||| ||||||||| |||||||| |||||||||    
T  35056295 cttttttgttatttcagttacaccgttaaacaaattttgctataatagtgttatatt 35056239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 340
Target Start/End: Complemental strand, 46273588 - 46273540
Alignment:
Q  292 acttttttgttatttcaattatactcttacacaaatttttctataataa 340  Q
    ||||||| ||||||||||||| || |||| |||| ||||||||||||||    
T  46273588 actttttcgttatttcaattacacccttaaacaattttttctataataa 46273540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 291 - 354
Target Start/End: Original strand, 96981 - 97044
Alignment:
Q  291 gacttttttgttatttcaattatactcttacacaaatttttctataataatgttatattcttgg 354  Q
    |||||||| |||||||||||||||| |||| |||||||||| ||||||||| ||||||| ||||    
T  96981 gactttttggttatttcaattatacccttaaacaaatttttttataataatattatattgttgg 97044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 37 - 111
Target Start/End: Complemental strand, 32931138 - 32931063
Alignment:
Q  37 attaaacaaacctaaagcttcgccaactggagcagaac-tcaaggagataaatttatggttttggctagaagaaaa 111  Q
    ||||||||||||||||||||| ||||| ||| || ||| | ||||||| |||||||||||||||||||||| ||||    
T  32931138 attaaacaaacctaaagcttcaccaacaggaacaaaacataaaggagaaaaatttatggttttggctagaacaaaa 32931063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 280 - 349
Target Start/End: Original strand, 38004332 - 38004402
Alignment:
Q  280 gattttgggcagacttttttgttatttcaattatactcttacacaaatttttctat-aataatgttatatt 349  Q
    |||||||||| || |||||||||||||||||||||| |||  ||||||||| |||| ||||||||||||||    
T  38004332 gattttgggctgaattttttgttatttcaattatacccttgaacaaattttcctataaataatgttatatt 38004402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 293 - 349
Target Start/End: Complemental strand, 10981724 - 10981668
Alignment:
Q  293 cttttttgttatttcaattatactcttacacaaatttttctataataatgttatatt 349  Q
    ||||||||||||| ||||||||| |||| |||||||||  |||||||||||||||||    
T  10981724 cttttttgttattccaattatacccttaaacaaattttcttataataatgttatatt 10981668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 283 - 354
Target Start/End: Original strand, 23315864 - 23315935
Alignment:
Q  283 tttgggcagacttttttgttatttcaattatactcttacacaaatttttctataataatgttatattcttgg 354  Q
    ||||||| || |||||| | ||||||||||||| |||| ||||||||| ||||| |||||||| ||||||||    
T  23315864 tttgggctgaattttttataatttcaattatacccttaaacaaattttcctatattaatgttacattcttgg 23315935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 307 - 349
Target Start/End: Original strand, 28915574 - 28915616
Alignment:
Q  307 caattatactcttacacaaatttttctataataatgttatatt 349  Q
    |||||||||||||| |||||||||| |||||||||||||||||    
T  28915574 caattatactcttaaacaaatttttttataataatgttatatt 28915616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 354
Target Start/End: Original strand, 4815856 - 4815916
Alignment:
Q  294 ttttttgttatttcaattatactcttacacaaatttttctataataatgttatattcttgg 354  Q
    |||||||||||| ||||||||| ||||  ||||||||  ||||||||||||||||| ||||    
T  4815856 ttttttgttattccaattatacccttaagcaaattttcgtataataatgttatattgttgg 4815916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 349
Target Start/End: Original strand, 7712908 - 7712976
Alignment:
Q  281 attttgggcagacttttttgttatttcaattatactcttacacaaatttttctataataatgttatatt 349  Q
    |||||| || |||||||||||| |||||||||||  |||| || ||||||| |||||||||| ||||||    
T  7712908 attttgagctgacttttttgttgtttcaattatatccttaaactaatttttttataataatgctatatt 7712976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 340
Target Start/End: Complemental strand, 32547437 - 32547389
Alignment:
Q  292 acttttttgttatttcaattatactcttacacaaatttttctataataa 340  Q
    |||||||  |||||||||||||||||||| |||| ||||||||||||||    
T  32547437 actttttcattatttcaattatactcttaaacaattttttctataataa 32547389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 349
Target Start/End: Complemental strand, 43097140 - 43097072
Alignment:
Q  281 attttgggcagacttttttgttatttcaattatactcttacacaaatttttctataataatgttatatt 349  Q
    ||||||||| ||||||||| |||||  |||||||| |||| |||||||||||||| | |||||| ||||    
T  43097140 attttgggctgacttttttattattcaaattatacccttaaacaaatttttctatgaaaatgttttatt 43097072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 291 - 330
Target Start/End: Original strand, 7396784 - 7396823
Alignment:
Q  291 gacttttttgttatttcaattatactcttacacaaatttt 330  Q
    ||||||||||||||||||||||||| |||| |||||||||    
T  7396784 gacttttttgttatttcaattatacccttaaacaaatttt 7396823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 295 - 354
Target Start/End: Original strand, 12294291 - 12294350
Alignment:
Q  295 tttttgttatttcaattatactcttacacaaatttttctataataatgttatattcttgg 354  Q
    ||||| ||||||||||||||| |||| |||||||||  ||||||||| ||||||| ||||    
T  12294291 ttttttttatttcaattatacgcttaaacaaattttcatataataatattatattgttgg 12294350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 349
Target Start/End: Original strand, 24670067 - 24670112
Alignment:
Q  304 tttcaattatactcttacacaaatttttctataataatgttatatt 349  Q
    ||||||||||| ||||| |||||||| ||||||| |||||||||||    
T  24670067 tttcaattatattcttaaacaaatttgtctataagaatgttatatt 24670112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 340
Target Start/End: Original strand, 2133519 - 2133567
Alignment:
Q  292 acttttttgttatttcaattatactcttacacaaatttttctataataa 340  Q
    |||||||  |||| ||||||||||||||| |||| ||||||||||||||    
T  2133519 actttttcattatctcaattatactcttaaacaattttttctataataa 2133567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 349
Target Start/End: Complemental strand, 7456729 - 7456681
Alignment:
Q  301 ttatttcaattatactcttacacaaatttttctataataatgttatatt 349  Q
    ||||| ||||||||| |||| | ||||| ||||||||||||||||||||    
T  7456729 ttattccaattatacccttagaaaaattattctataataatgttatatt 7456681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 340
Target Start/End: Complemental strand, 23431733 - 23431685
Alignment:
Q  292 acttttttgttatttcaattatactcttacacaaatttttctataataa 340  Q
    |||||||| |||| |||||||||| |||| |||| ||||||||||||||    
T  23431733 acttttttattatctcaattatacccttaaacaattttttctataataa 23431685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 340
Target Start/End: Complemental strand, 23432258 - 23432210
Alignment:
Q  292 acttttttgttatttcaattatactcttacacaaatttttctataataa 340  Q
    |||||||| ||||  |||||||||||||| |||| ||||||||||||||    
T  23432258 acttttttattatcccaattatactcttaaacaactttttctataataa 23432210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 322 - 354
Target Start/End: Original strand, 48171787 - 48171819
Alignment:
Q  322 acaaatttttctataataatgttatattcttgg 354  Q
    |||||||||||||||||||||||||||| ||||    
T  48171787 acaaatttttctataataatgttatattattgg 48171819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 280 - 349
Target Start/End: Original strand, 19346315 - 19346384
Alignment:
Q  280 gattttgggcagacttttttgttatttcaattatactcttacacaaatttttctataataatgttatatt 349  Q
    |||||||||| |||||| |||||||||||||||||| |||| |||||  ||| |||||||| ||||||||    
T  19346315 gattttgggctgactttgttgttatttcaattatacccttaaacaaaaatttttataataaggttatatt 19346384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 282 - 354
Target Start/End: Complemental strand, 29357257 - 29357184
Alignment:
Q  282 ttttgggcagacttttttgttatttcaattatactcttacacaaat-ttttctataataatgttatattcttgg 354  Q
    |||||||| |||||||||||||||||||||||||  ||| || | | |||||||||||||||||||||| ||||    
T  29357257 ttttgggctgacttttttgttatttcaattatacctttaaaccagtattttctataataatgttatattgttgg 29357184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 293 - 349
Target Start/End: Complemental strand, 12650764 - 12650708
Alignment:
Q  293 cttttttgttatttcaattatactcttacacaaatttttctataataatgttatatt 349  Q
    |||||||||||||  ||||||||||||| |||||||||| ||||||||| |||||||    
T  12650764 cttttttgttattctaattatactcttaaacaaatttttttataataattttatatt 12650708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 283 - 354
Target Start/End: Complemental strand, 5096619 - 5096548
Alignment:
Q  283 tttgggcagacttttttgttatttcaattatactcttacacaaatttttctataataatgttatattcttgg 354  Q
    ||||||| || |||||| | ||||||||||||| |||| ||||||||| ||||| |||||||| ||||||||    
T  5096619 tttgggctgaattttttataatttcaattatacccttaaacaaattttcctatattaatgttacattcttgg 5096548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 279 - 354
Target Start/End: Original strand, 13640881 - 13640956
Alignment:
Q  279 ggattttgggcagacttttttgttatttcaattatactcttacacaaatttttctataataatgttatattcttgg 354  Q
    ||||||||||| ||||| ||||||||| ||||||||  | || |||||||||  ||||||||||||||||| ||||    
T  13640881 ggattttgggctgacttctttgttattccaattatatccctaaacaaattttgttataataatgttatattgttgg 13640956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 283 - 354
Target Start/End: Complemental strand, 39753699 - 39753628
Alignment:
Q  283 tttgggcagacttttttgttatttcaattatactcttacacaaatttttctataataatgttatattcttgg 354  Q
    ||||||| || |||||| | ||||||||||||| || | ||||||||||||||| |||||||| ||||||||    
T  39753699 tttgggctgaattttttataatttcaattataccctcaaacaaatttttctatattaatgttacattcttgg 39753628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 349
Target Start/End: Original strand, 13703262 - 13703332
Alignment:
Q  279 ggattttgggcagacttttttgttatttcaattatactcttacacaaatttttctataataatgttatatt 349  Q
    ||||||||||| ||||| ||||||||| ||||||||  |||| |||||||||  ||||||||| |||||||    
T  13703262 ggattttgggctgacttctttgttattccaattatatccttaaacaaattttcttataataatcttatatt 13703332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 294 - 344
Target Start/End: Original strand, 25089110 - 25089160
Alignment:
Q  294 ttttttgttatttcaattatactcttacacaaatttttctataataatgtt 344  Q
    |||||| ||||||||||||||| |||| ||||||||||||||| |||||||    
T  25089110 ttttttattatttcaattatacccttaaacaaatttttctatattaatgtt 25089160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 302 - 354
Target Start/End: Complemental strand, 9059401 - 9059349
Alignment:
Q  302 tatttcaattatactcttacacaaatttttctataataatgttatattcttgg 354  Q
    |||| |||||||||| ||| ||||||||||||||| |||||||||||| ||||    
T  9059401 tattccaattatactgttaaacaaatttttctatattaatgttatattgttgg 9059349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 279 - 354
Target Start/End: Original strand, 3584096 - 3584171
Alignment:
Q  279 ggattttgggcagacttttttgttatttcaattatactcttacacaaatttttctataataatgttatattcttgg 354  Q
    ||||||||||  | ||||||||||||| ||||||||| ||||  ||||||||  ||||||||| ||||||| ||||    
T  3584096 ggattttgggttgccttttttgttattccaattatacgcttaagcaaattttcttataataatattatattgttgg 3584171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 310 - 349
Target Start/End: Original strand, 5318755 - 5318794
Alignment:
Q  310 ttatactcttacacaaatttttctataataatgttatatt 349  Q
    ||||||||| | ||||||||||||||||||||||||||||    
T  5318755 ttatactctgaaacaaatttttctataataatgttatatt 5318794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 294 - 349
Target Start/End: Complemental strand, 35071039 - 35070984
Alignment:
Q  294 ttttttgttatttcaattatactcttacacaaatttttctataataatgttatatt 349  Q
    |||||||||||| || |||||| |||| | |||| |||||||||||||||||||||    
T  35071039 ttttttgttattccagttatacccttaaataaatatttctataataatgttatatt 35070984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 294 - 349
Target Start/End: Complemental strand, 35097072 - 35097017
Alignment:
Q  294 ttttttgttatttcaattatactcttacacaaatttttctataataatgttatatt 349  Q
    |||||||||||| || |||||| |||| |||||| |||||||||| ||||||||||    
T  35097072 ttttttgttattccagttatacccttaaacaaatatttctataatgatgttatatt 35097017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 281 - 348
Target Start/End: Original strand, 39617343 - 39617410
Alignment:
Q  281 attttgggcagacttttttgttatttcaattatactcttacacaaatttttctataataatgttatat 348  Q
    ||||||||| |||||||||||||||  |||  |||  ||| |||||||||||||| ||||||||||||    
T  39617343 attttgggctgacttttttgttattgtaatggtacctttaaacaaatttttctatgataatgttatat 39617410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 354
Target Start/End: Complemental strand, 10040930 - 10040857
Alignment:
Q  281 attttgggcagacttttttgttatttcaattatactcttacacaaatttttctataataatgttatattcttgg 354  Q
    |||| |||| || |||||||| |||  |||||||| |||| ||||||||| |||||| ||||||||||| ||||    
T  10040930 atttggggctgaattttttgtaattctaattatacccttaaacaaattttcctataaaaatgttatattgttgg 10040857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 341
Target Start/End: Complemental strand, 20097990 - 20097945
Alignment:
Q  296 ttttgttatttcaattatactcttacacaaatttttctataataat 341  Q
    |||||||||  |||||||||||||| |||| |||||||||||||||    
T  20097990 ttttgttatcccaattatactcttaaacaactttttctataataat 20097945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 349
Target Start/End: Original strand, 33429105 - 33429162
Alignment:
Q  293 cttttttgttatttcaattatactcttacacaaatttt-tctataataatgttatatt 349  Q
    ||||||||||||| ||| ||||  |||| ||||||||| |||||||||||||||||||    
T  33429105 cttttttgttattccaactatatccttaaacaaattttttctataataatgttatatt 33429162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 349
Target Start/End: Original strand, 5468058 - 5468106
Alignment:
Q  301 ttatttcaattatactcttacacaaatttttctataataatgttatatt 349  Q
    ||||| ||||||||| | || | ||||||||||||||||||||||||||    
T  5468058 ttattccaattatacccgtaaataaatttttctataataatgttatatt 5468106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 340
Target Start/End: Complemental strand, 25610677 - 25610629
Alignment:
Q  292 acttttttgttatttcaattatactcttacacaaatttttctataataa 340  Q
    ||||||| ||||| |||||||||| |||| |||| ||||||||||||||    
T  25610677 actttttcgttatctcaattatacccttaaacaactttttctataataa 25610629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 349
Target Start/End: Original strand, 35791921 - 35791969
Alignment:
Q  301 ttatttcaattatactcttacacaaatttttctataataatgttatatt 349  Q
    |||||| ||||||||  ||| ||||||||| ||||||||||||||||||    
T  35791921 ttattttaattatacctttaaacaaattttcctataataatgttatatt 35791969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 349
Target Start/End: Complemental strand, 38636434 - 38636382
Alignment:
Q  297 tttgttatttcaattatactcttacacaaatttttctataataatgttatatt 349  Q
    ||||||||| ||||||||| ||||  |||| | ||||||||||||||||||||    
T  38636434 tttgttattccaattatacccttaagcaaaatattctataataatgttatatt 38636382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 340
Target Start/End: Complemental strand, 45001035 - 45000987
Alignment:
Q  292 acttttttgttatttcaattatactcttacacaaatttttctataataa 340  Q
    |||||||| |||| |||||||||| |||| |||| ||||||||||||||    
T  45001035 acttttttattatctcaattatacccttaaacaactttttctataataa 45000987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 280 - 349
Target Start/End: Original strand, 9050969 - 9051038
Alignment:
Q  280 gattttgggcagacttttttgttatttcaattatactcttacacaaatttttctataataatgttatatt 349  Q
    ||||||| || ||||| |||||||||  ||||||||||||| ||||| |||||||||||||| |||||||    
T  9050969 gattttgagctgacttatttgttattcgaattatactcttaaacaaaattttctataataatattatatt 9051038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 280 - 349
Target Start/End: Original strand, 28479496 - 28479565
Alignment:
Q  280 gattttgggcagacttttttgttatttcaattatactcttacacaaatttttctataataatgttatatt 349  Q
    |||||| ||||||||||||||||||| |||||||||  ||| | |||||||| ||||||||| |||||||    
T  28479496 gattttaggcagacttttttgttattccaattatacatttaaataaatttttatataataatattatatt 28479565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 293 - 349
Target Start/End: Original strand, 1592071 - 1592127
Alignment:
Q  293 cttttttgttatttcaattatactcttacacaaatttttctataataatgttatatt 349  Q
    |||||||||||||  |||||||| |||| ||||||||||||||||||||||| ||||    
T  1592071 cttttttgttattctaattatacccttaaacaaatttttctataataatgttctatt 1592127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 279 - 334
Target Start/End: Complemental strand, 1584713 - 1584658
Alignment:
Q  279 ggattttgggcagacttttttgttatttcaattatactcttacacaaatttttcta 334  Q
    ||||||||||| | ||||||||||||||||||||||| |||| |||||| ||||||    
T  1584713 ggattttgggctgtcttttttgttatttcaattatacccttaaacaaatatttcta 1584658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 294 - 349
Target Start/End: Original strand, 9666130 - 9666185
Alignment:
Q  294 ttttttgttatttcaattatactcttacacaaatttttctataataatgttatatt 349  Q
    ||||||||||||||  |||||| |||| |||||| |||||||||||||||||||||    
T  9666130 ttttttgttatttcggttatacccttaaacaaatatttctataataatgttatatt 9666185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 294 - 349
Target Start/End: Original strand, 17704276 - 17704331
Alignment:
Q  294 ttttttgttatttcaattatactcttacacaaatttttctataataatgttatatt 349  Q
    ||||||||||||| |||| |||||||| ||||||||| |||||| |||||||||||    
T  17704276 ttttttgttattttaattctactcttaaacaaattttactataacaatgttatatt 17704331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 279 - 354
Target Start/End: Original strand, 27175124 - 27175199
Alignment:
Q  279 ggattttgggcagacttttttgttatttcaattatactcttacacaaatttttctataataatgttatattcttgg 354  Q
    ||||||||||| |  |||||||||||| |||||||||  ||| ||||  |||||||||||||||||||||| ||||    
T  27175124 ggattttgggctggattttttgttattccaattataccattaaacaatgttttctataataatgttatattgttgg 27175199  T

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Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 283 - 354
Target Start/End: Complemental strand, 27263937 - 27263866
Alignment:
Q  283 tttgggcagacttttttgttatttcaattatactcttacacaaatttttctataataatgttatattcttgg 354  Q
    ||||||| || |||||| | ||||||||||||| |||| ||||||||| ||||| |||||||| ||||||||    
T  27263937 tttgggctgaattttttataatttcaattatacccttaaacaaattttcctatattaatgttacattcttgg 27263866  T

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Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 283 - 354
Target Start/End: Complemental strand, 28394765 - 28394694
Alignment:
Q  283 tttgggcagacttttttgttatttcaattatactcttacacaaatttttctataataatgttatattcttgg 354  Q
    ||||||| || |||||| | ||||||||||||| |||| ||||||||| ||||| |||||||| ||||||||    
T  28394765 tttgggctgaattttttataatttcaattatacccttaaacaaattttcctatattaatgttacattcttgg 28394694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 283 - 354
Target Start/End: Complemental strand, 31172397 - 31172326
Alignment:
Q  283 tttgggcagacttttttgttatttcaattatactcttacacaaatttttctataataatgttatattcttgg 354  Q
    ||||||| || |||||| | ||||||||||||| || | ||||||||||||||| |||||||| ||||||||    
T  31172397 tttgggctgaattttttataatttcaattataccctcaaacaaatttttctatattaatgttacattcttgg 31172326  T

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Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 283 - 354
Target Start/End: Complemental strand, 41879904 - 41879833
Alignment:
Q  283 tttgggcagacttttttgttatttcaattatactcttacacaaatttttctataataatgttatattcttgg 354  Q
    ||||||| || |||||| | ||||||||||||| |||| ||||||||| ||||| |||||||| ||||||||    
T  41879904 tttgggctgaattttttataatttcaattatacccttaaacaaattttcctatattaatgttacattcttgg 41879833  T

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Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 291 - 348
Target Start/End: Original strand, 31202001 - 31202058
Alignment:
Q  291 gacttttttgttatttcaattatactcttacacaaatttttctataataatgttatat 348  Q
    |||||||||||||||| |||||||| |||| |||||||||  ||||| ||||||||||    
T  31202001 gacttttttgttattttaattatacccttaaacaaattttcttataacaatgttatat 31202058  T

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Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 301 - 354
Target Start/End: Complemental strand, 38629332 - 38629279
Alignment:
Q  301 ttatttcaattatactcttacacaaatttttctataataatgttatattcttgg 354  Q
    |||||||| ||||| ||||| ||||||||| |||||||||||||||||| ||||    
T  38629332 ttatttcagttatattcttaaacaaattttcctataataatgttatattgttgg 38629279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 341
Target Start/End: Original strand, 21344877 - 21344917
Alignment:
Q  301 ttatttcaattatactcttacacaaatttttctataataat 341  Q
    |||||||||||||||| ||| ||||||||||||||||||||    
T  21344877 ttatttcaattatacttttaaacaaatttttctataataat 21344917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 294 - 341
Target Start/End: Complemental strand, 6205916 - 6205869
Alignment:
Q  294 ttttttgttatttcaattatactcttacacaaatttttctataataat 341  Q
    ||||||||||||  ||||||||||||| |||||||||| |||||||||    
T  6205916 ttttttgttattcaaattatactcttaaacaaatttttatataataat 6205869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 295 - 354
Target Start/End: Complemental strand, 11487618 - 11487560
Alignment:
Q  295 tttttgttatttcaattatactcttacacaaatttttctataataatgttatattcttgg 354  Q
    |||||||| |||||||| ||| |||| ||||||||| |||||||||||||||||| ||||    
T  11487618 tttttgttttttcaattgtac-cttaaacaaattttcctataataatgttatattattgg 11487560  T

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Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 348
Target Start/End: Original strand, 14930651 - 14930721
Alignment:
Q  278 tggattttgggcagacttttttgttatttcaattatactcttacacaaatttttctataataatgttatat 348  Q
    |||||||||||  |||||| || ||||| |||||||||||||| |||| |||| | ||||||||| |||||    
T  14930651 tggattttgggatgactttattattattacaattatactcttaaacaatttttcccataataatggtatat 14930721  T

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Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 341
Target Start/End: Complemental strand, 7464191 - 7464142
Alignment:
Q  292 acttttttgttatttcaattatactcttacacaaatttttctataataat 341  Q
    |||||||  |||| |||||||||| |||| ||||||||||||||||||||    
T  7464191 actttttcattatctcaattatacccttaaacaaatttttctataataat 7464142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 354
Target Start/End: Complemental strand, 38600708 - 38600655
Alignment:
Q  301 ttatttcaattatactcttacacaaatttttctataataatgttatattcttgg 354  Q
    |||||||| ||||| ||||| ||||||||| |||||| ||||||||||| ||||    
T  38600708 ttatttcagttatattcttaaacaaattttcctataacaatgttatattgttgg 38600655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 340
Target Start/End: Original strand, 40493855 - 40493892
Alignment:
Q  303 atttcaattatactcttacacaaatttttctataataa 340  Q
    |||||||||||||||||| |||| ||||||||||||||    
T  40493855 atttcaattatactcttaaacaactttttctataataa 40493892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 340
Target Start/End: Original strand, 9523869 - 9523913
Alignment:
Q  296 ttttgttatttcaattatactcttacacaaatttttctataataa 340  Q
    ||||||||||| |||||||| |||| |||| ||||||||||||||    
T  9523869 ttttgttattttaattatacccttaaacaactttttctataataa 9523913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 354
Target Start/End: Original strand, 26647208 - 26647268
Alignment:
Q  294 ttttttgttatttcaattatactcttacacaaatttttctataataatgttatattcttgg 354  Q
    |||||| |||||||| |||||| |||| ||||||| ||||||||||||  |||||| ||||    
T  26647208 ttttttattatttcagttatacccttaaacaaattattctataataataatatatttttgg 26647268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 349
Target Start/End: Original strand, 26917758 - 26917806
Alignment:
Q  301 ttatttcaattatactcttacacaaatttttctataataatgttatatt 349  Q
    |||||||| |||| | |||| ||||||||| ||||||||||||||||||    
T  26917758 ttatttcagttatgcccttaaacaaattttactataataatgttatatt 26917806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 354
Target Start/End: Original strand, 26918792 - 26918852
Alignment:
Q  294 ttttttgttatttcaattatactcttacacaaatttttctataataatgttatattcttgg 354  Q
    |||||| |||||||| |||||| |||| ||||||| ||||||||||||  |||||| ||||    
T  26918792 ttttttattatttcagttatacccttaaacaaattattctataataataatatatttttgg 26918852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 340
Target Start/End: Original strand, 39850816 - 39850864
Alignment:
Q  292 acttttttgttatttcaattatactcttacacaaatttttctataataa 340  Q
    ||||||||  ||| |||||||||| |||| |||||||||||||||||||    
T  39850816 acttttttactatctcaattatacccttaaacaaatttttctataataa 39850864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 340
Target Start/End: Complemental strand, 42027737 - 42027689
Alignment:
Q  292 acttttttgttatttcaattatactcttacacaaatttttctataataa 340  Q
    |||||||  |||| ||||||||||||||| |||| ||||||||||||||    
T  42027737 actttttcattatctcaattatactcttaaacaattttttctataataa 42027689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 340
Target Start/End: Original strand, 42516171 - 42516219
Alignment:
Q  292 acttttttgttatttcaattatactcttacacaaatttttctataataa 340  Q
    |||||||| |||| |||||||||| |||| |||| ||||||||||||||    
T  42516171 acttttttattatctcaattatacccttaaacaactttttctataataa 42516219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 283 - 354
Target Start/End: Original strand, 81784 - 81855
Alignment:
Q  283 tttgggcagacttttttgttatttcaattatactcttacacaaatttttctataataatgttatattcttgg 354  Q
    ||||||| || |||||| | ||||||||||||| |||| ||||||||| ||||| |||||||| ||||||||    
T  81784 tttgggctgaattttttataatttcaattatacccttaaacaaattttcctatattaatgttacattcttgg 81855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 291 - 349
Target Start/End: Original strand, 53667 - 53725
Alignment:
Q  291 gacttttttgttatttcaattatactcttacacaaatttttctataataatgttatatt 349  Q
    ||||||||  ||||||||||||||   ||| ||||||||||||||||||||||||||||    
T  53667 gactttttcattatttcaattatatctttaaacaaatttttctataataatgttatatt 53725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 328
Target Start/End: Original strand, 36749 - 36798
Alignment:
Q  279 ggattttgggcagacttttttgttatttcaattatactcttacacaaatt 328  Q
    |||||||| || |||||||||||| || |||||||||||||| |||||||    
T  36749 ggattttgagccgacttttttgtttttccaattatactcttaaacaaatt 36798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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