View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10865A_low_88 (Length: 353)

Name: NF10865A_low_88
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10865A_low_88
NF10865A_low_88
[»] chr2 (26 HSPs)
chr2 (13-347)||(39215559-39215894)
chr2 (15-344)||(39161771-39162104)
chr2 (15-344)||(39207090-39207423)
chr2 (17-150)||(39370039-39370172)
chr2 (13-342)||(39388918-39389253)
chr2 (174-341)||(39192266-39192436)
chr2 (174-341)||(39197946-39198116)
chr2 (13-130)||(39192439-39192556)
chr2 (13-130)||(39198119-39198236)
chr2 (174-276)||(39222932-39223037)
chr2 (207-344)||(39370254-39370394)
chr2 (13-130)||(39222812-39222929)
chr2 (13-150)||(39414761-39414898)
chr2 (17-126)||(39468270-39468379)
chr2 (13-99)||(39137809-39137895)
chr2 (203-340)||(39381275-39381412)
chr2 (16-129)||(39473409-39473522)
chr2 (17-126)||(39397852-39397961)
chr2 (54-129)||(39459220-39459295)
chr2 (52-130)||(39381510-39381588)
chr2 (203-248)||(39421688-39421733)
chr2 (14-129)||(39421832-39421947)
chr2 (203-240)||(39468448-39468485)
chr2 (282-335)||(39223101-39223154)
chr2 (13-110)||(39494461-39494558)
chr2 (196-240)||(39459387-39459431)
[»] chr6 (2 HSPs)
chr6 (17-126)||(16113230-16113339)
chr6 (203-240)||(16113441-16113478)
[»] chr5 (2 HSPs)
chr5 (203-344)||(33561135-33561281)
chr5 (208-248)||(17059602-17059642)
[»] chr7 (2 HSPs)
chr7 (13-99)||(19807759-19807845)
chr7 (204-300)||(19807963-19808059)
[»] chr8 (1 HSPs)
chr8 (219-334)||(45342187-45342305)


Alignment Details
Target: chr2 (Bit Score: 320; Significance: 1e-180; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 13 - 347
Target Start/End: Original strand, 39215559 - 39215894
Alignment:
Q  13 agagaagcaatttgaaggacggtggaaagaacttgcgttaaaagagaataagttcaaaggacaggtaaaggagttcaagttaaaagagaagcagtttgga 112  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  39215559 agagaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttgga 39215658  T
Q  113 ggacaagtcaaggatcctaagttaaagttgaaaaaattcgatttacgaccgacgaagcttgg-tcaaggaaaaaatatattgaagaaacacaatcgggta 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  39215659 ggacaagtcaaggatcctaagttaaagttgaaaaaattcgatttacgaccgacgaagcttgggtcaaggaaaaaatatattgaagaaacacaatcgggta 39215758  T
Q  212 aatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaatttttataacccgatctacatagttgtttaaa 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39215759 aatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaatttttataacccgatctacatagttgtttaaa 39215858  T
Q  312 aatatttttaatcatgttaatgttttatgtctttgt 347  Q
    ||||||||||||||||||||||||||||||||||||    
T  39215859 aatatttttaatcatgttaatgttttatgtctttgt 39215894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 15 - 344
Target Start/End: Original strand, 39161771 - 39162104
Alignment:
Q  15 agaagcaatttgaaggacggtggaaagaacttgcgttaaaagagaataagttcaaaggacaggtaaaggagttcaagttaaaagagaagcagtttggagg 114  Q
    |||| |||||||||||||||||||| ||||| | |   |||||| ||||| |||||| | | |  |||||| |||| |||||||| ||||| |||| |||    
T  39161771 agaaacaatttgaaggacggtggaatgaactggagacgaaagagtataagctcaaagtaaatgagaaggagctcaacttaaaagaaaagcaatttgaagg 39161870  T
Q  115 acaagtcaaggatcctaagttaaagttgaaaaaattcgatttacgaccgacgaagcttg-gtcaaggaaaaaatatattgaaga---aacacaatcgggt 210  Q
    |||||||||||||||||||| |||| |||| ||||| |||  || ||  | | ||| || ||||||||||||||||||||| ||   || | |||| |||    
T  39161871 acaagtcaaggatcctaagtcaaagatgaataaatttgatggacaactaaaggagcctgagtcaaggaaaaaatatattgatgaggaaaaagaatccggt 39161970  T
Q  211 aaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaatttttataacccgatctacatagttgtttaa 310  Q
    |||||||||| ||||||||| ||||||||||| ||| | || ||| |||||| ||||||||||||| | |||||  | || ||||||| || || |||||    
T  39161971 aaatgttcttcttcatctagattattgaaagaattttattataactgttccttttaatgatgatgatattttttgaatcctgatctacttaattttttaa 39162070  T
Q  311 aaatatttttaatcatgttaatgttttatgtctt 344  Q
    | |  |||||| ||||||||||||| ||||||||    
T  39162071 acacgtttttactcatgttaatgttgtatgtctt 39162104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 15 - 344
Target Start/End: Complemental strand, 39207423 - 39207090
Alignment:
Q  15 agaagcaatttgaaggacggtggaaagaacttgcgttaaaagagaataagttcaaaggacaggtaaaggagttcaagttaaaagagaagcagtttggagg 114  Q
    |||| |||||||||||||||||||| ||||| | |   |||||| ||||| |||||| | | |  |||||| |||| |||||||| ||||| |||| |||    
T  39207423 agaaacaatttgaaggacggtggaatgaactggagacgaaagagtataagctcaaagtaaatgagaaggagctcaacttaaaagaaaagcaatttgaagg 39207324  T
Q  115 acaagtcaaggatcctaagttaaagttgaaaaaattcgatttacgaccgacgaagcttg-gtcaaggaaaaaatatattgaaga---aacacaatcgggt 210  Q
    |||||||||||||||||||| |||| |||| ||||| |||  || ||  | | ||| || ||||||||||||||||||||| ||   || | |||| |||    
T  39207323 acaagtcaaggatcctaagtcaaagatgaataaatttgatggacaactaaaggagcctgagtcaaggaaaaaatatattgatgaggaaaaagaatccggt 39207224  T
Q  211 aaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaatttttataacccgatctacatagttgtttaa 310  Q
    |||||||||| ||||||||| ||||||||||| ||| | || ||| |||||| ||||||||||||| | |||||  | || ||||||| || || |||||    
T  39207223 aaatgttcttcttcatctagattattgaaagaattttattataactgttccttttaatgatgatgatattttttgaatcctgatctacttaattttttaa 39207124  T
Q  311 aaatatttttaatcatgttaatgttttatgtctt 344  Q
    | |  |||||| ||||||||||||| ||||||||    
T  39207123 acacgtttttactcatgttaatgttgtatgtctt 39207090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 17 - 150
Target Start/End: Original strand, 39370039 - 39370172
Alignment:
Q  17 aagcaatttgaaggacggtggaaagaacttgcgttaaaagagaataagttcaaaggacaggtaaaggagttcaagttaaaagagaagcagtttggaggac 116  Q
    ||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||  ||||| ||||||||| | ||||||||||||||||||||| |||    
T  39370039 aagcaatttgaaggacggtggaaagaacttgagttaaaagagaacaagttcatagtgcaggtgaaggagttcgaattaaaagagaagcagtttggaagac 39370138  T
Q  117 aagtcaaggatcctaagttaaagttgaaaaaatt 150  Q
    ||||||||| || | ||| |||| |||| |||||    
T  39370139 aagtcaagggtcttgagtcaaagatgaataaatt 39370172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 13 - 342
Target Start/End: Complemental strand, 39389253 - 39388918
Alignment:
Q  13 agagaagcaatttgaaggacggtggaaagaacttgcgttaaaagagaataagttcaaaggacaggtaaaggagttcaagttaaaagagaagcagtttgga 112  Q
    |||| ||| |||| || |||| ||||| ||||| | ||| |||||| |||||||||||| | |||| |||||| |||| |||||||| |||||||||| |    
T  39389253 agagcagcgatttaaaagacgatggaacgaactggagttgaaagagtataagttcaaagtaaaggtgaaggagctcaacttaaaagaaaagcagtttgaa 39389154  T
Q  113 ggacaagtcaaggatcctaagttaaagttgaaaaaattcgatttacgaccgacgaagcttg-gtcaaggaaaaaatatattgaag---aaacacaatcgg 208  Q
    || |||||||| |||||| ||| |||| |||| ||||| |||  || |   | | |||  | |||||||||||||||| |||| |   ||| | |||| |    
T  39389153 gggcaagtcaacgatcctgagtcaaagctgaataaatttgatggacaaataaaggagcccgagtcaaggaaaaaatattttgatggggaaaaagaatccg 39389054  T
Q  209 gtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgaca--atttttataacccgatctacatagttgt 306  Q
    ||||||||||||||||||| |||||||||||||| |||   |||||| |||||||||||||||||||| |   |||||||| |  ||||||| || ||      
T  39389053 gtaaatgttcttattcatccagtttattgaaagaatttttttacaactgttcctcttaatgatgatgatattttttttatagcttgatctacttaattcc 39388954  T
Q  307 ttaaaaatatttttaatcatgttaatgttttatgtc 342  Q
     || |||  |||||||||||||||||||| ||||||    
T  39388953 atagaaacgtttttaatcatgttaatgttgtatgtc 39388918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 174 - 341
Target Start/End: Complemental strand, 39192436 - 39192266
Alignment:
Q  174 gtcaaggaaaaaatatattgaaga---aacacaatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatga 270  Q
    |||||||||||| |||||||| ||   || | |||| ||||||||| |||||||||||  |||||||| ||| ||||| | ||||  |||||||||||||    
T  39192436 gtcaaggaaaaagtatattgatgaggaaaaagaatcaggtaaatgtgcttattcatcttatttattgacagaatttcattgcaactattcctcttaatga 39192337  T
Q  271 tgatgacaatttttataacccgatctacatagttgtttaaaaatatttttaatcatgttaatgttttatgt 341  Q
    |||||| | ||||||||||  ||||||| || || |||||||| ||||||||||||||||||||| |||||    
T  39192336 tgatgatattttttataacatgatctacttaattctttaaaaacatttttaatcatgttaatgttctatgt 39192266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 174 - 341
Target Start/End: Complemental strand, 39198116 - 39197946
Alignment:
Q  174 gtcaaggaaaaaatatattgaaga---aacacaatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatga 270  Q
    |||||||||||| |||||||| ||   || | |||| ||||||||| |||||||||||  |||||||| ||| ||||| | ||||  |||||||||||||    
T  39198116 gtcaaggaaaaagtatattgatgaggaaaaagaatcaggtaaatgtgcttattcatcttatttattgacagaatttcattgcaactattcctcttaatga 39198017  T
Q  271 tgatgacaatttttataacccgatctacatagttgtttaaaaatatttttaatcatgttaatgttttatgt 341  Q
    |||||| | ||||||||||  ||||||| || || |||||||| ||||||||||||||||||||| |||||    
T  39198016 tgatgatattttttataacatgatctacttaattctttaaaaacatttttaatcatgttaatgttctatgt 39197946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 13 - 130
Target Start/End: Complemental strand, 39192556 - 39192439
Alignment:
Q  13 agagaagcaatttgaaggacggtggaaagaacttgcgttaaaagagaataagttcaaaggacaggtaaaggagttcaagttaaaagagaagcagtttgga 112  Q
    |||||||||||| |||||||| ||||  ||||||| || |||||||||||||||||||| | |||| |||||| |||| |||||||| |||||||||| |    
T  39192556 agagaagcaattagaaggacgatggagtgaacttgagtcaaaagagaataagttcaaagcaaaggtgaaggagctcaacttaaaagaaaagcagtttgaa 39192457  T
Q  113 ggacaagtcaaggatcct 130  Q
    |||| |||||||||||||    
T  39192456 ggactagtcaaggatcct 39192439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 13 - 130
Target Start/End: Complemental strand, 39198236 - 39198119
Alignment:
Q  13 agagaagcaatttgaaggacggtggaaagaacttgcgttaaaagagaataagttcaaaggacaggtaaaggagttcaagttaaaagagaagcagtttgga 112  Q
    |||||||||||| |||||||| ||||  ||||||| || |||||||||||||||||||| | |||| |||||| |||| |||||||| |||||||||| |    
T  39198236 agagaagcaattagaaggacgatggagtgaacttgagtcaaaagagaataagttcaaagcaaaggtgaaggagctcaacttaaaagaaaagcagtttgaa 39198137  T
Q  113 ggacaagtcaaggatcct 130  Q
    |||| |||||||||||||    
T  39198136 ggactagtcaaggatcct 39198119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 174 - 276
Target Start/End: Original strand, 39222932 - 39223037
Alignment:
Q  174 gtcaaggaaaaaatatattga---agaaacacaatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatga 270  Q
    |||||||||||||||||||||   ||||| | |||||||||||||||||||||||||| ||||||||||| | ||||  |||||| ||||||||||||||    
T  39222932 gtcaaggaaaaaatatattgatggagaaaaagaatcgggtaaatgttcttattcatcttgtttattgaaaaaatttctttacaactgttcctcttaatga 39223031  T
Q  271 tgatga 276  Q
    ||||||    
T  39223032 tgatga 39223037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 207 - 344
Target Start/End: Original strand, 39370254 - 39370394
Alignment:
Q  207 gggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctctta---atgatgatgacaatttttataacccgatctacatagt 303  Q
    ||||||||||||||||||||||||||||||||   | ||||| || ||  ||||| ||||   |||||||||| | |||||||||||||||||| |||||    
T  39370254 gggtaaatgttcttattcatctagtttattgatttaatttcattataattgttccacttaatgatgatgatgatattttttataacccgatctatatagt 39370353  T
Q  304 tgtttaaaaatatttttaatcatgttaatgttttatgtctt 344  Q
    | | |||||| ||| ||||||||||||||||| ||||||||    
T  39370354 tctataaaaacattcttaatcatgttaatgttgtatgtctt 39370394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 130
Target Start/End: Original strand, 39222812 - 39222929
Alignment:
Q  13 agagaagcaatttgaaggacggtggaaagaacttgcgttaaaagagaataagttcaaaggacaggtaaaggagttcaagttaaaagagaagcagtttgga 112  Q
    ||||||||||||||||| ||| |||||  |||||| || | |||||||||||||||||| | |||| |||||| |||| || ||||| |||  ||||| |    
T  39222812 agagaagcaatttgaagaacgatggaataaacttgagtcagaagagaataagttcaaagcaaaggtgaaggagctcaacttcaaagaaaagtggtttgaa 39222911  T
Q  113 ggacaagtcaaggatcct 130  Q
    ||||||||||||||||||    
T  39222912 ggacaagtcaaggatcct 39222929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 150
Target Start/End: Complemental strand, 39414898 - 39414761
Alignment:
Q  13 agagaagcaatttgaaggacggtggaaagaacttgcgttaaaagagaataagttcaaaggacaggtaaaggagttcaagttaaaagagaagcagtttgga 112  Q
    ||||||||||||||||| ||| |||||||||||   |  ||| |||||||||||||||  || ||| || ||| |||||||||| ||||| ||||||| |    
T  39414898 agagaagcaatttgaagaacgatggaaagaactcaagacaaatgagaataagttcaaactactggtcaaagagctcaagttaaatgagaaacagtttgaa 39414799  T
Q  113 ggacaagtcaaggatcctaagttaaagttgaaaaaatt 150  Q
    |||||||| ||||||||| ||| |||| || |||||||    
T  39414798 ggacaagttaaggatcctgagtcaaagctggaaaaatt 39414761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 126
Target Start/End: Original strand, 39468270 - 39468379
Alignment:
Q  17 aagcaatttgaaggacggtggaaagaacttgcgttaaaagagaataagttcaaaggacaggtaaaggagttcaagttaaaagagaagcagtttggaggac 116  Q
    ||||||||||| | |||||| |||||| |   || ||||||||||  |||||||| | |||| ||||||||||||||||||||||||||| ||| |||||    
T  39468270 aagcaatttgatgaacggtgtaaagaattgaagtcaaaagagaatcggttcaaagtaaaggtgaaggagttcaagttaaaagagaagcagattgaaggac 39468369  T
Q  117 aagtcaagga 126  Q
    ||||||||||    
T  39468370 aagtcaagga 39468379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 13 - 99
Target Start/End: Original strand, 39137809 - 39137895
Alignment:
Q  13 agagaagcaatttgaaggacggtggaaagaacttgcgttaaaagagaataagttcaaaggacaggtaaaggagttcaagttaaaaga 99  Q
    |||||||||| |||||| ||||||||||||||| | || |||||||||||||||||||| || ||| || ||| |||||||||||||    
T  39137809 agagaagcaaattgaagaacggtggaaagaactcgagtcaaaagagaataagttcaaagtactggtcaaagagctcaagttaaaaga 39137895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 203 - 340
Target Start/End: Complemental strand, 39381412 - 39381275
Alignment:
Q  203 aatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaatttttataacccgatctacatag 302  Q
    |||| ||||||||||||||||||| ||||||| ||||||| ||||| | ||   ||| || ||||||||| ||| | ||||  ||||  ||||||||||     
T  39381412 aatctggtaaatgttcttattcatatagtttactgaaagaatttcatttcagttgtttcttttaatgatgttgatacttttattaacttgatctacataa 39381313  T
Q  303 ttgtttaaaaatatttttaatcatgttaatgttttatg 340  Q
    ||  |||||||||||||||||| |||||||||| ||||    
T  39381312 ttcattaaaaatatttttaatcgtgttaatgttgtatg 39381275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 16 - 129
Target Start/End: Complemental strand, 39473522 - 39473409
Alignment:
Q  16 gaagcaatttgaaggacggtggaaagaacttgcgttaaaagagaataagttcaaaggacaggtaaaggagttcaagttaaaagagaagcagtttggagga 115  Q
    |||||||||||||| ||| ||||||||||| | || |||||||||||||||||||| ||  || |||    |||||||||||||||||||| ||| ||||    
T  39473522 gaagcaatttgaagaacgatggaaagaactcgagtcaaaagagaataagttcaaagtactagtgaagtcactcaagttaaaagagaagcaggttgaagga 39473423  T
Q  116 caagtcaaggatcc 129  Q
     ||||| |||||||    
T  39473422 gaagtcgaggatcc 39473409  T

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Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 17 - 126
Target Start/End: Complemental strand, 39397961 - 39397852
Alignment:
Q  17 aagcaatttgaaggacggtggaaagaacttgcgttaaaagagaataagttcaaaggacaggtaaaggagttcaagttaaaagagaagcagtttggaggac 116  Q
    |||||| |||||| |||||||||| |||||| || |||||||||| ||||||||| | ||||  ||||| |  ||||||||||||||||| ||| ||| |    
T  39397961 aagcaaattgaagaacggtggaaaaaacttgagtcaaaagagaatcagttcaaagtaaaggtgcaggagcttgagttaaaagagaagcaggttgcaggtc 39397862  T
Q  117 aagtcaagga 126  Q
     |||||||||    
T  39397861 gagtcaagga 39397852  T

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Target: chr2; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 54 - 129
Target Start/End: Original strand, 39459220 - 39459295
Alignment:
Q  54 aagagaataagttcaaaggacaggtaaaggagttcaagttaaaagagaagcagtttggaggacaagtcaaggatcc 129  Q
    |||||||||||||||||| ||  || || ||| ||||||||||||| ||||| |||| ||||||||||||||||||    
T  39459220 aagagaataagttcaaagtactagtgaaagagctcaagttaaaagacaagcaatttgaaggacaagtcaaggatcc 39459295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 52 - 130
Target Start/End: Complemental strand, 39381588 - 39381510
Alignment:
Q  52 aaaagagaataagttcaaaggacaggtaaaggagttcaagttaaaagagaagcagtttggaggacaagtcaaggatcct 130  Q
    |||||||||| ||||||||| | || | || ||| |||||||||||||||||||||||| | |||||| ||||||||||    
T  39381588 aaaagagaatgagttcaaagtaaagatgaatgagctcaagttaaaagagaagcagtttgaaagacaagacaaggatcct 39381510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 248
Target Start/End: Complemental strand, 39421733 - 39421688
Alignment:
Q  203 aatcgggtaaatgttcttattcatctagtttattgaaagagtttca 248  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||    
T  39421733 aatctggtaaatgttcttattcatctaatttattgaaagagtttca 39421688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 129
Target Start/End: Complemental strand, 39421947 - 39421832
Alignment:
Q  14 gagaagcaatttgaaggacggtggaaagaacttgcgttaaaagagaataagttcaaaggacaggtaaaggagttcaagttaaaagagaagcagtttggag 113  Q
    |||||| ||||||||| ||  |||||||||||   || |||||||||||||||||||| ||  || || ||| |||| |||||||| ||||  |||||||    
T  39421947 gagaagaaatttgaagaacaatggaaagaactcaagtcaaaagagaataagttcaaagtactagtgaaagagctcaaattaaaagacaagcgatttggag 39421848  T
Q  114 gacaagtcaaggatcc 129  Q
     || ||||||||||||    
T  39421847 cactagtcaaggatcc 39421832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 203 - 240
Target Start/End: Original strand, 39468448 - 39468485
Alignment:
Q  203 aatcgggtaaatgttcttattcatctagtttattgaaa 240  Q
    |||| |||||||||||||||||||||||||||||||||    
T  39468448 aatctggtaaatgttcttattcatctagtttattgaaa 39468485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 335
Target Start/End: Original strand, 39223101 - 39223154
Alignment:
Q  282 tttataacccgatctacatagttgtttaaaaatatttttaatcatgttaatgtt 335  Q
    |||| |||| ||||||| || || ||||| ||||||||||||||||||||||||    
T  39223101 tttacaacctgatctacttaattctttaagaatatttttaatcatgttaatgtt 39223154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 110
Target Start/End: Complemental strand, 39494558 - 39494461
Alignment:
Q  13 agagaagcaatttgaaggacggtggaaagaacttgcgttaaaagagaataagttcaaaggacaggtaaaggagttcaagttaaaagagaagcagtttg 110  Q
    |||||| ||||||||||||||  ||||||| |  | || |||||| || |||||||||| ||| || |||||| | |||  |||||||||||||||||    
T  39494558 agagaaacaatttgaaggacgagggaaagagccagagtcaaaagacaagaagttcaaagcacacgtgaaggagctgaagccaaaagagaagcagtttg 39494461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 240
Target Start/End: Original strand, 39459387 - 39459431
Alignment:
Q  196 gaaacacaatcgggtaaatgttcttattcatctagtttattgaaa 240  Q
    |||||| |||||||||| ||||||||||||| ||| |||||||||    
T  39459387 gaaacagaatcgggtaagtgttcttattcatttagcttattgaaa 39459431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 17 - 126
Target Start/End: Original strand, 16113230 - 16113339
Alignment:
Q  17 aagcaatttgaaggacggtggaaagaacttgcgttaaaagagaataagttcaaaggacaggtaaaggagttcaagttaaaagagaagcagtttggaggac 116  Q
    ||||||||||||| ||||||||||||||| |  | |||||||||| ||||||||| | |||  |||||| |||||||||||||||||||| ||| || ||    
T  16113230 aagcaatttgaagaacggtggaaagaactcgaatcaaaagagaatcagttcaaagtaaaggagaaggagctcaagttaaaagagaagcagattgaagtac 16113329  T
Q  117 aagtcaagga 126  Q
    ||||||||||    
T  16113330 aagtcaagga 16113339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 240
Target Start/End: Original strand, 16113441 - 16113478
Alignment:
Q  203 aatcgggtaaatgttcttattcatctagtttattgaaa 240  Q
    |||||||||| |||||| ||||||||||||||||||||    
T  16113441 aatcgggtaagtgttctcattcatctagtttattgaaa 16113478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 203 - 344
Target Start/End: Original strand, 33561135 - 33561281
Alignment:
Q  203 aatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaattt----ttataacccgatctac 298  Q
    |||| ||||||||||||| ||||||||||||||||||||| ||| | || ||  |||||||| | |||||||||  ||||    ||||| || |||||||    
T  33561135 aatccggtaaatgttcttcttcatctagtttattgaaagaattttattataagtgttcctctcagtgatgatgatgattttttgttatatcctgatctac 33561234  T
Q  299 atagttgtttaaaaatatttttaatcatgttaatgttt-tatgtctt 344  Q
     || |  |||||| | |||||||||||||||||||||| ||||||||    
T  33561235 ttaatcctttaaacacatttttaatcatgttaatgtttgtatgtctt 33561281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 248
Target Start/End: Original strand, 17059602 - 17059642
Alignment:
Q  208 ggtaaatgttcttattcatctagtttattgaaagagtttca 248  Q
    |||||||||| |||||||||||||||||| ||||| |||||    
T  17059602 ggtaaatgttgttattcatctagtttattaaaagaatttca 17059642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 13 - 99
Target Start/End: Original strand, 19807759 - 19807845
Alignment:
Q  13 agagaagcaatttgaaggacggtggaaagaacttgcgttaaaagagaataagttcaaaggacaggtaaaggagttcaagttaaaaga 99  Q
    |||||| ||| |||||| | ||||||||||||| | || |||||||||||||||||||| || ||| || ||| |||||||||||||    
T  19807759 agagaatcaaattgaagaaaggtggaaagaactcgagtcaaaagagaataagttcaaagtactggtcaaagagctcaagttaaaaga 19807845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 204 - 300
Target Start/End: Original strand, 19807963 - 19808059
Alignment:
Q  204 atcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaatttttataacccgatctacat 300  Q
    |||||||||| ||||||||||||||||||||| ||| |||||||| | || | ||| || || |||||| ||| | |||| |||||| |||||||||    
T  19807963 atcgggtaaaagttcttattcatctagtttatagaaggagtttcatttcagctgtttctttttatgatgttgatatttttaataacctgatctacat 19808059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 334
Target Start/End: Original strand, 45342187 - 45342305
Alignment:
Q  219 ttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaatttttataacccgatctacatagttgtttaaaa---ata 315  Q
    |||||||||||||||||||||||| ||||| | ||||  || || ||  ||||| ||| | |||| |||||| |||||||||| |  |||||||   |||    
T  45342187 ttattcatctagtttattgaaagaatttcatttcaactatttcttttgttgatgttgatatttttaataacctgatctacatattcttttaaaaaatata 45342286  T
Q  316 tttttaatcatgttaatgt 334  Q
    | |||||| ||||||||||    
T  45342287 tgtttaatgatgttaatgt 45342305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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