View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10865A_low_99 (Length: 342)
Name: NF10865A_low_99
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865A_low_99 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 7 - 342
Target Start/End: Original strand, 51873632 - 51873967
Alignment:
| Q |
7 |
gtagggcccaaacctttcttcatgcataaaaacacacactcaccttcatcatcttcctcccatacaaaatacacaaacctcttacatcttctcaaacagc |
106 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51873632 |
gtagggcccaagcctttcttcatgcataaaaacacacactcaccttcatcatcttcctcccatacaaaatacacaaacctcttacatcttctcaaacagc |
51873731 |
T |
|
| Q |
107 |
ttcaaacacaatccatccacgatcactaagcctaagctagaagcaagagcagtggtagctcttgtatattctatcctttgtacatatccaaaactacttg |
206 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51873732 |
ttcaaacacagtccatccacgatcactaagcctaagctagaagcaagagcagtggtagctcttgtatattctatcctttgtacatatccaaaactacttg |
51873831 |
T |
|
| Q |
207 |
ctagtgagatatgtgtaaacccaagccaaccccattactctgtcccacacaaaccaaccacataacttctgagccaaaactactcaaaaaggacccgcct |
306 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||| |||||||||||| || |||||||||| ||| ||||| ||| |
|
|
| T |
51873832 |
ctagtgagatatgtgtaaacctaagccatccccatttctctgtcccacacaaaccaacctcataacttctgatcctaaactactcataaatgaccctcct |
51873931 |
T |
|
| Q |
307 |
catgatgaagtgcaagaacaaaatgaacatcaaaga |
342 |
Q |
| |
|
||||||||||| ||||| |||||||||| ||||||| |
|
|
| T |
51873932 |
catgatgaagttcaagatcaaaatgaacttcaaaga |
51873967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University